Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00010 * 2 1 4 4 H 1.48502 * 109.46868 * 240.00345 * 3 2 1 5 5 H 1.48502 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46843 * 120.00324 * 3 2 1 7 7 C 1.37874 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99911 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46305 * 305.41959 * 9 7 2 11 11 C 1.53041 * 109.45248 * 65.39049 * 9 7 2 12 12 C 1.53118 * 109.27619 * 179.18648 * 11 9 7 13 13 C 1.53113 * 109.16259 * 302.34718 * 12 11 9 14 14 C 1.53030 * 109.28081 * 57.65485 * 13 12 11 15 15 N 1.46846 * 109.46120 * 185.43792 * 9 7 2 16 16 C 1.46895 * 111.00120 * 54.15267 * 15 9 7 17 17 C 1.54892 * 110.59999 * 183.53812 * 16 15 9 18 18 C 1.54884 * 102.74859 * 203.32701 * 17 16 15 19 19 C 1.54273 * 104.19810 * 37.94343 * 18 17 16 20 20 C 1.53869 * 106.59518 * 336.39156 * 19 18 17 21 21 H 0.97002 * 120.00145 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.50175 * 299.12855 * 11 9 7 23 23 H 1.09005 * 109.50335 * 59.24607 * 11 9 7 24 24 H 1.09006 * 109.51843 * 62.25300 * 12 11 9 25 25 H 1.09000 * 109.51856 * 182.43618 * 12 11 9 26 26 H 1.09006 * 109.49967 * 177.59406 * 13 12 11 27 27 H 1.09001 * 109.50207 * 297.67298 * 13 12 11 28 28 H 1.08997 * 109.46724 * 180.80438 * 14 13 12 29 29 H 1.08998 * 109.46620 * 60.83363 * 14 13 12 30 30 H 1.08996 * 110.43843 * 306.15981 * 16 15 9 31 31 H 1.08997 * 110.75287 * 85.01041 * 17 16 15 32 32 H 1.08995 * 110.75575 * 321.64549 * 17 16 15 33 33 H 1.09002 * 110.49097 * 279.26374 * 18 17 16 34 34 H 1.09004 * 110.48725 * 156.61845 * 18 17 16 35 35 H 1.09003 * 110.02630 * 95.67458 * 19 18 17 36 36 H 1.09000 * 110.03296 * 217.10293 * 19 18 17 37 37 H 1.09000 * 110.03462 * 119.28662 * 20 19 18 38 38 H 1.09003 * 110.03294 * 240.66199 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.5539 -2.5153 0.8395 11 6 0.4752 -2.6409 -1.3099 12 6 -0.2725 -3.9771 -1.3130 13 6 0.7333 -5.1163 -1.1260 14 6 1.5015 -4.9028 0.1801 15 7 2.2000 -3.6120 0.1333 16 6 3.0588 -3.4349 1.3118 17 6 4.1138 -4.5661 1.3924 18 6 4.4793 -4.5861 2.8973 19 6 3.1395 -4.3237 3.6157 20 6 2.2364 -3.5918 2.6076 21 1 -0.4850 0.8400 0.0004 22 1 -0.2401 -1.8234 -1.3998 23 1 1.1704 -2.6109 -2.1489 24 1 -0.9954 -3.9919 -0.4973 25 1 -0.7917 -4.1017 -2.2633 26 1 0.2023 -6.0674 -1.0846 27 1 1.4320 -5.1258 -1.9625 28 1 2.2285 -5.7046 0.3092 29 1 0.8033 -4.9077 1.0171 30 1 3.5459 -2.4602 1.2849 31 1 4.9866 -4.3242 0.7860 32 1 3.6821 -5.5193 1.0869 33 1 5.1959 -3.7973 3.1264 34 1 4.8792 -5.5600 3.1799 35 1 2.6821 -5.2685 3.9095 36 1 3.3027 -3.6984 4.4935 37 1 1.3405 -4.1813 2.4122 38 1 1.9604 -2.6116 2.9965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259168630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = -14.668957 kcal Electronic energy + Delta-G solvation = -16554.116410 eV Core-core repulsion = 14202.367161 eV Total energy + Delta-G solvation = -2351.749249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00626 -36.14331 -32.85905 -31.77960 -29.50666 -28.18336 -26.55546 -25.04724 -22.82260 -21.28578 -20.01244 -19.33629 -18.01467 -16.26364 -15.72528 -14.91804 -14.70592 -13.85654 -13.42837 -13.33179 -13.08869 -12.72620 -12.38706 -12.09621 -11.71445 -11.07863 -10.89113 -10.79465 -10.74273 -10.58775 -10.54311 -10.51075 -10.23901 -10.08248 -9.89052 -9.65674 -9.56880 -9.06874 -8.69778 -8.34737 -7.00399 -5.98492 -4.01383 3.33642 3.38077 3.41040 4.43680 4.91599 5.16980 5.19919 5.32743 5.43268 5.65533 5.76883 5.85010 5.93991 6.04745 6.08783 6.11412 6.17378 6.28370 6.30724 6.41540 6.43068 6.45742 6.57393 6.63292 6.71388 6.83774 6.90433 6.92168 7.10998 7.19633 7.34988 7.62250 7.79051 7.88534 8.26158 8.39969 8.70400 9.06779 9.63182 11.09353 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.012005 C = 0.008655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.991964 B = 2331.794443 C = 3234.478333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.220 3.780 10 H 0.004 0.996 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.051 3.949 15 N -0.527 5.527 16 C 0.095 3.905 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.156 4.156 21 H 0.260 0.740 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -8.500 2.840 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.114 3.886 10 H 0.022 0.978 11 C -0.140 4.140 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.250 5.250 16 C -0.014 4.014 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.195 4.195 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.917 -8.354 2.404 9.534 hybrid contribution -0.213 0.948 0.761 1.234 sum 3.704 -7.406 3.165 8.864 Atomic orbital electron populations 1.69915 1.05845 1.26545 1.50878 1.24920 0.94823 0.98972 0.95353 0.86658 0.79550 0.83180 0.78606 1.20244 1.21440 1.20385 1.21118 0.93163 0.89828 1.50084 0.92054 1.19162 0.89214 0.87165 0.93082 0.97815 1.21602 0.98778 0.94544 0.99124 1.21681 0.97546 0.97211 0.99591 1.21539 0.97938 0.97296 0.98130 1.22086 0.96023 0.93539 0.96106 1.62126 1.23516 1.01996 1.37398 1.22443 0.92970 0.98824 0.87208 1.22667 0.99038 0.99474 0.94902 1.22325 0.97173 1.00491 0.96131 1.22065 0.95918 0.99550 0.98233 1.22783 0.99081 1.00477 0.97189 0.93015 0.89902 0.93837 0.93445 0.93855 0.93461 0.91986 0.92162 0.95848 0.88491 0.91880 0.91611 0.91966 0.92543 0.92873 0.92628 0.92043 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 11.73 55.43 0.65 -24.76 16 2 C 0.06 1.67 5.33 -17.82 -0.09 1.57 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.50 -13.63 7.65 -34.44 -0.26 -13.90 16 8 H 0.06 1.67 6.54 -52.49 -0.34 1.32 16 9 C 0.22 5.48 1.47 -68.87 -0.10 5.38 16 10 H 0.00 0.12 7.61 -51.93 -0.40 -0.28 16 11 C -0.10 -2.45 5.19 -26.65 -0.14 -2.58 16 12 C -0.12 -2.44 6.00 -26.61 -0.16 -2.60 16 13 C -0.11 -1.98 6.09 -26.66 -0.16 -2.14 16 14 C 0.05 0.95 4.78 -3.84 -0.02 0.93 16 15 N -0.53 -11.31 4.52 -218.17 -0.99 -12.30 16 16 C 0.09 1.86 2.64 -66.05 -0.17 1.69 16 17 C -0.12 -1.97 6.37 -24.74 -0.16 -2.13 16 18 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 19 C -0.12 -1.78 6.80 -25.61 -0.17 -1.96 16 20 C -0.16 -2.89 5.41 -25.61 -0.14 -3.03 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.08 2.20 6.53 -51.93 -0.34 1.86 16 23 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.02 5.78 -51.93 -0.30 0.72 16 29 H 0.02 0.46 6.06 -51.93 -0.31 0.14 16 30 H 0.10 2.13 6.10 -51.93 -0.32 1.82 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.03 5.73 -51.93 -0.30 0.73 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.17 5.54 -51.93 -0.29 0.89 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 279.43 15.07 4.21 4.21 Total: -1.00 -27.48 279.43 -9.28 -36.76 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.38 Total: 0.46 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.75 Total: -20.67 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.33 Total: -37.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.48 -9.28 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259168630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.094 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds