Wall clock time and date at job start Mon Mar 30 2020 03:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00010 * 2 1 4 4 H 1.48502 * 109.46868 * 240.00345 * 3 2 1 5 5 H 1.48502 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46843 * 120.00324 * 3 2 1 7 7 C 1.37874 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99911 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46305 * 305.41959 * 9 7 2 11 11 C 1.53041 * 109.45248 * 65.39049 * 9 7 2 12 12 C 1.53118 * 109.27619 * 179.18648 * 11 9 7 13 13 C 1.53113 * 109.16259 * 302.34718 * 12 11 9 14 14 C 1.53030 * 109.28081 * 57.65485 * 13 12 11 15 15 N 1.46846 * 109.46120 * 185.43792 * 9 7 2 16 16 C 1.46895 * 111.00120 * 54.15267 * 15 9 7 17 17 C 1.54892 * 110.59999 * 183.53812 * 16 15 9 18 18 C 1.54884 * 102.74859 * 203.32701 * 17 16 15 19 19 C 1.54273 * 104.19810 * 37.94343 * 18 17 16 20 20 C 1.53869 * 106.59518 * 336.39156 * 19 18 17 21 21 H 0.97002 * 120.00145 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.50175 * 299.12855 * 11 9 7 23 23 H 1.09005 * 109.50335 * 59.24607 * 11 9 7 24 24 H 1.09006 * 109.51843 * 62.25300 * 12 11 9 25 25 H 1.09000 * 109.51856 * 182.43618 * 12 11 9 26 26 H 1.09006 * 109.49967 * 177.59406 * 13 12 11 27 27 H 1.09001 * 109.50207 * 297.67298 * 13 12 11 28 28 H 1.08997 * 109.46724 * 180.80438 * 14 13 12 29 29 H 1.08998 * 109.46620 * 60.83363 * 14 13 12 30 30 H 1.08996 * 110.43843 * 306.15981 * 16 15 9 31 31 H 1.08997 * 110.75287 * 85.01041 * 17 16 15 32 32 H 1.08995 * 110.75575 * 321.64549 * 17 16 15 33 33 H 1.09002 * 110.49097 * 279.26374 * 18 17 16 34 34 H 1.09004 * 110.48725 * 156.61845 * 18 17 16 35 35 H 1.09003 * 110.02630 * 95.67458 * 19 18 17 36 36 H 1.09000 * 110.03296 * 217.10293 * 19 18 17 37 37 H 1.09000 * 110.03462 * 119.28662 * 20 19 18 38 38 H 1.09003 * 110.03294 * 240.66199 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.5539 -2.5153 0.8395 11 6 0.4752 -2.6409 -1.3099 12 6 -0.2725 -3.9771 -1.3130 13 6 0.7333 -5.1163 -1.1260 14 6 1.5015 -4.9028 0.1801 15 7 2.2000 -3.6120 0.1333 16 6 3.0588 -3.4349 1.3118 17 6 4.1138 -4.5661 1.3924 18 6 4.4793 -4.5861 2.8973 19 6 3.1395 -4.3237 3.6157 20 6 2.2364 -3.5918 2.6076 21 1 -0.4850 0.8400 0.0004 22 1 -0.2401 -1.8234 -1.3998 23 1 1.1704 -2.6109 -2.1489 24 1 -0.9954 -3.9919 -0.4973 25 1 -0.7917 -4.1017 -2.2633 26 1 0.2023 -6.0674 -1.0846 27 1 1.4320 -5.1258 -1.9625 28 1 2.2285 -5.7046 0.3092 29 1 0.8033 -4.9077 1.0171 30 1 3.5459 -2.4602 1.2849 31 1 4.9866 -4.3242 0.7860 32 1 3.6821 -5.5193 1.0869 33 1 5.1959 -3.7973 3.1264 34 1 4.8792 -5.5600 3.1799 35 1 2.6821 -5.2685 3.9095 36 1 3.3027 -3.6984 4.4935 37 1 1.3405 -4.1813 2.4122 38 1 1.9604 -2.6116 2.9965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259168630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:17 Heat of formation + Delta-G solvation = -30.402007 kcal Electronic energy + Delta-G solvation = -16554.798646 eV Core-core repulsion = 14202.367161 eV Total energy + Delta-G solvation = -2352.431485 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59340 -37.65238 -34.87154 -33.35445 -31.35717 -29.52809 -28.06183 -27.01213 -24.42764 -23.07550 -21.35461 -20.88302 -19.70137 -18.24456 -17.33748 -16.52215 -16.37290 -15.51740 -15.07595 -14.86214 -14.64319 -14.32764 -14.03181 -13.79795 -13.37949 -12.85405 -12.64007 -12.58253 -12.32276 -12.10878 -11.93872 -11.89305 -11.85098 -11.81057 -11.47719 -11.38196 -11.11587 -10.70598 -10.68346 -10.38739 -8.74894 -8.10763 -6.20362 1.39460 1.40941 1.48323 2.41623 3.18291 3.37190 3.86456 3.89586 4.05483 4.18913 4.25020 4.35182 4.57253 4.64320 4.68519 4.73641 4.79314 4.84774 4.89361 4.95286 5.05385 5.08252 5.14067 5.18773 5.24118 5.29247 5.31879 5.42230 5.49762 5.51372 5.60343 5.67412 5.78348 5.85224 6.29984 6.52138 6.88119 6.98344 7.48319 8.95993 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.012005 C = 0.008655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.991964 B = 2331.794443 C = 3234.478333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.229 3.771 10 H -0.037 1.037 11 C -0.098 4.098 12 C -0.117 4.117 13 C -0.106 4.106 14 C 0.049 3.951 15 N -0.534 5.534 16 C 0.086 3.914 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.153 4.153 21 H 0.260 0.740 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -10.425 3.068 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.122 3.878 10 H -0.020 1.020 11 C -0.137 4.137 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.079 4.079 15 N -0.257 5.257 16 C -0.023 4.023 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.192 4.192 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.281 -10.294 2.636 11.866 hybrid contribution -0.651 1.550 0.698 1.820 sum 4.630 -8.744 3.334 10.440 Atomic orbital electron populations 1.70051 1.07136 1.27141 1.51752 1.25670 0.95611 1.02198 0.95155 0.85697 0.78406 0.79289 0.78783 1.19649 1.21030 1.19821 1.21406 0.92997 0.91329 1.49725 0.92771 1.18881 0.88972 0.88035 0.91924 1.01978 1.21435 0.98075 0.96075 0.98091 1.21608 0.97720 0.95770 1.00421 1.21538 0.97446 0.97780 0.97558 1.22224 0.96571 0.92613 0.96506 1.62100 1.22856 1.02152 1.38616 1.22479 0.93752 0.99004 0.87106 1.22605 0.97683 0.97999 0.96788 1.22315 0.96525 1.02380 0.94063 1.22039 0.95738 0.99987 0.97357 1.22700 0.99528 0.99068 0.97895 0.93138 0.93232 0.94780 0.94316 0.91752 0.89787 0.91640 0.89333 0.96633 0.91851 0.91518 0.90456 0.91668 0.89417 0.90936 0.91870 0.92907 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 11.73 21.45 0.25 -54.26 16 2 C 0.01 0.69 5.33 84.65 0.45 1.14 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.52 -29.07 7.65 25.60 0.20 -28.87 16 8 H 0.05 3.06 6.54 -2.91 -0.02 3.04 16 9 C 0.23 11.86 1.47 44.19 0.06 11.93 16 10 H -0.04 -2.20 7.61 -2.39 -0.02 -2.22 16 11 C -0.10 -4.84 5.19 30.65 0.16 -4.68 16 12 C -0.12 -4.62 6.00 30.67 0.18 -4.43 16 13 C -0.11 -3.50 6.09 30.64 0.19 -3.31 16 14 C 0.05 1.73 4.78 86.32 0.41 2.15 16 15 N -0.53 -23.02 4.52 -844.16 -3.81 -26.83 16 16 C 0.09 3.38 2.64 45.99 0.12 3.50 16 17 C -0.11 -3.35 6.37 31.88 0.20 -3.15 16 18 C -0.12 -2.83 6.83 31.67 0.22 -2.62 16 19 C -0.11 -3.13 6.80 31.32 0.21 -2.92 16 20 C -0.15 -5.72 5.41 31.32 0.17 -5.55 16 21 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 22 H 0.05 2.74 6.53 -2.39 -0.02 2.73 16 23 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.68 5.78 -2.39 -0.01 2.66 16 29 H 0.02 0.59 6.06 -2.39 -0.01 0.58 16 30 H 0.06 2.89 6.10 -2.39 -0.01 2.88 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.12 5.73 -2.39 -0.01 2.10 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 2.04 5.54 -2.39 -0.01 2.03 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -61.85 279.43 2.06 -59.79 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.01 Total: 11.31 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.58 Total: -36.81 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.56 Total: -81.10 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -61.85 2.06 -59.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259168630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.386 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds