Wall clock time and date at job start Mon Mar 30 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48494 * 109.47593 * 270.00283 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00516 * 3 2 1 6 6 H 1.48501 * 109.46981 * 150.00081 * 3 2 1 7 7 C 1.37877 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.45123 * 60.03012 * 9 7 2 11 11 C 1.53036 * 109.46610 * 300.05709 * 9 7 2 12 12 C 1.53113 * 109.28106 * 180.80455 * 11 9 7 13 13 C 1.53127 * 109.15977 * 57.65101 * 12 11 9 14 14 C 1.53030 * 109.27989 * 302.34622 * 13 12 11 15 15 N 1.46844 * 109.46324 * 179.97438 * 9 7 2 16 16 C 1.46900 * 111.00099 * 305.85900 * 15 9 7 17 17 C 1.53871 * 110.03309 * 292.72463 * 16 15 9 18 18 C 1.54270 * 106.63656 * 240.69255 * 17 16 15 19 19 C 1.54961 * 104.16374 * 336.44263 * 18 17 16 20 20 C 1.54271 * 110.03021 * 175.55566 * 16 15 9 21 21 H 0.96998 * 120.00585 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.50311 * 60.85878 * 11 9 7 23 23 H 1.09001 * 109.53503 * 300.76333 * 11 9 7 24 24 H 1.09005 * 109.52345 * 297.75009 * 12 11 9 25 25 H 1.08997 * 109.58045 * 177.58861 * 12 11 9 26 26 H 1.08997 * 109.50300 * 182.40198 * 13 12 11 27 27 H 1.09005 * 109.50059 * 62.29125 * 13 12 11 28 28 H 1.08998 * 109.46297 * 299.16413 * 14 13 12 29 29 H 1.09004 * 109.45507 * 179.18823 * 14 13 12 30 30 H 1.09000 * 110.05592 * 54.14277 * 16 15 9 31 31 H 1.08995 * 110.02836 * 359.97438 * 17 16 15 32 32 H 1.08996 * 110.03246 * 121.38375 * 17 16 15 33 33 H 1.08992 * 110.48689 * 95.09597 * 18 17 16 34 34 H 1.09003 * 110.48186 * 217.73123 * 18 17 16 35 35 H 1.09003 * 110.72130 * 279.57974 * 19 18 17 36 36 H 1.08994 * 110.92189 * 156.29963 * 19 18 17 37 37 H 1.09005 * 110.48868 * 261.57030 * 20 16 15 38 38 H 1.08997 * 110.48603 * 24.08477 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8748 -0.6807 0.8893 11 6 4.0210 -0.4710 -1.2500 12 6 5.5520 -0.4909 -1.2565 13 6 6.0359 -1.9429 -1.2078 14 6 5.4681 -2.6232 0.0398 15 7 4.0008 -2.5785 -0.0010 16 6 3.4193 -3.3423 1.1109 17 6 3.9456 -2.8036 2.4527 18 6 4.6872 -3.9706 3.1368 19 6 4.0649 -5.2397 2.5017 20 6 3.8597 -4.8184 1.0253 21 1 -0.4851 0.8400 0.0004 22 1 3.6705 0.5611 -1.2414 23 1 3.6467 -0.9750 -2.1411 24 1 5.9270 0.0474 -0.3860 25 1 5.9196 -0.0148 -2.1655 26 1 7.1250 -1.9624 -1.1692 27 1 5.6933 -2.4707 -2.0980 28 1 5.8222 -2.1032 0.9299 29 1 5.7991 -3.6613 0.0698 30 1 2.3317 -3.2749 1.0822 31 1 4.6328 -1.9757 2.2788 32 1 3.1135 -2.4739 3.0748 33 1 5.7548 -3.9216 2.9233 34 1 4.5113 -3.9559 4.2125 35 1 3.1106 -5.4779 2.9716 36 1 4.7494 -6.0851 2.5706 37 1 3.0803 -5.4227 0.5610 38 1 4.7923 -4.9065 0.4682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259168636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:20 Heat of formation + Delta-G solvation = -4.135604 kcal Electronic energy + Delta-G solvation = -16670.767856 eV Core-core repulsion = 14319.475368 eV Total energy + Delta-G solvation = -2351.292488 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28735 -36.31308 -32.84093 -31.91365 -30.23816 -28.26495 -26.77908 -25.06979 -23.02742 -21.28844 -20.17556 -19.53171 -18.13568 -16.66768 -15.97701 -15.13791 -14.69411 -13.89818 -13.67776 -13.49884 -13.39789 -12.96738 -12.51056 -12.34654 -11.98123 -11.22124 -11.15615 -10.83915 -10.78044 -10.70802 -10.64663 -10.47456 -10.37031 -10.22877 -9.96158 -9.83702 -9.63735 -9.17982 -8.80551 -8.50400 -7.20605 -6.05225 -4.03051 3.27288 3.37681 3.39171 4.41061 4.73586 5.09861 5.13502 5.24458 5.32645 5.46901 5.53027 5.64338 5.86667 5.97635 6.00119 6.04686 6.07106 6.11319 6.16637 6.21313 6.27064 6.30364 6.39196 6.47438 6.51907 6.59790 6.69730 6.72642 6.73574 6.89061 6.90709 7.13167 7.37583 7.66806 8.05238 8.21850 8.70620 9.01461 9.57476 11.07410 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.011786 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.643826 B = 2375.195796 C = 2991.561259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.189 3.811 10 H -0.001 1.001 11 C -0.117 4.117 12 C -0.125 4.125 13 C -0.111 4.111 14 C 0.048 3.952 15 N -0.517 5.517 16 C 0.090 3.910 17 C -0.152 4.152 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.121 4.121 21 H 0.263 0.737 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -5.798 2.381 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.541 4.541 8 H 0.101 0.899 9 C 0.082 3.918 10 H 0.016 0.984 11 C -0.155 4.155 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.080 4.080 15 N -0.240 5.240 16 C -0.018 4.018 17 C -0.192 4.192 18 C -0.159 4.159 19 C -0.162 4.162 20 C -0.159 4.159 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.484 -5.888 1.926 12.178 hybrid contribution 0.661 1.523 0.716 1.808 sum 11.144 -4.366 2.642 12.257 Atomic orbital electron populations 1.69876 1.06095 1.26798 1.51054 1.24905 0.94672 0.98682 0.94792 0.86937 0.79829 0.84053 0.77920 1.20532 1.22564 1.19358 1.21018 0.88310 0.94597 1.50213 0.89924 1.19610 0.95928 0.84246 0.92064 0.98379 1.21989 0.92542 0.99440 1.01547 1.21668 0.98090 0.96234 1.00277 1.21522 0.98219 0.96172 0.98941 1.22111 0.90348 0.99335 0.96189 1.61992 1.04119 1.15164 1.42721 1.22297 1.01200 0.91114 0.87234 1.22766 1.00035 0.97739 0.98622 1.22335 0.99127 0.95488 0.98963 1.22486 1.00273 0.96929 0.96489 1.22544 1.01402 0.96475 0.95500 0.92692 0.93505 0.91319 0.93282 0.93116 0.92926 0.91502 0.95816 0.91557 0.88025 0.92045 0.91820 0.92507 0.92548 0.91743 0.92375 0.91877 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.88 22.09 24.36 -169.99 -4.14 17.95 16 4 H -0.28 -6.81 6.87 56.52 0.39 -6.43 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 7 C -0.50 -13.94 8.44 -34.44 -0.29 -14.23 16 8 H 0.08 2.48 6.54 -52.49 -0.34 2.14 16 9 C 0.19 4.47 1.09 -68.88 -0.08 4.40 16 10 H 0.00 -0.03 6.00 -51.93 -0.31 -0.34 16 11 C -0.12 -2.61 4.84 -26.65 -0.13 -2.74 16 12 C -0.12 -2.27 6.00 -26.61 -0.16 -2.43 16 13 C -0.11 -1.80 6.09 -26.65 -0.16 -1.97 16 14 C 0.05 0.84 4.78 -3.84 -0.02 0.82 16 15 N -0.52 -10.65 4.49 -218.82 -0.98 -11.64 16 16 C 0.09 1.74 2.70 -66.59 -0.18 1.56 16 17 C -0.15 -2.71 5.45 -25.61 -0.14 -2.85 16 18 C -0.12 -1.73 6.84 -25.03 -0.17 -1.90 16 19 C -0.12 -1.67 6.91 -24.70 -0.17 -1.84 16 20 C -0.12 -1.90 6.31 -25.07 -0.16 -2.06 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 23 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.02 0.42 6.35 -51.93 -0.33 0.09 16 29 H 0.07 1.04 5.79 -51.93 -0.30 0.74 16 30 H 0.10 2.27 5.98 -51.93 -0.31 1.96 16 31 H 0.06 1.16 5.14 -51.93 -0.27 0.90 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.04 5.67 -51.93 -0.29 0.74 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -28.96 270.84 -8.18 -37.14 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.16 Total: 0.33 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.75 Total: -21.29 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.21 Total: -38.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.96 -8.18 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259168636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.004 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds