Wall clock time and date at job start Mon Mar 30 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48494 * 109.47593 * 270.00283 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00516 * 3 2 1 6 6 H 1.48501 * 109.46981 * 150.00081 * 3 2 1 7 7 C 1.37877 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.45123 * 60.03012 * 9 7 2 11 11 C 1.53036 * 109.46610 * 300.05709 * 9 7 2 12 12 C 1.53113 * 109.28106 * 180.80455 * 11 9 7 13 13 C 1.53127 * 109.15977 * 57.65101 * 12 11 9 14 14 C 1.53030 * 109.27989 * 302.34622 * 13 12 11 15 15 N 1.46844 * 109.46324 * 179.97438 * 9 7 2 16 16 C 1.46900 * 111.00099 * 305.85900 * 15 9 7 17 17 C 1.53871 * 110.03309 * 292.72463 * 16 15 9 18 18 C 1.54270 * 106.63656 * 240.69255 * 17 16 15 19 19 C 1.54961 * 104.16374 * 336.44263 * 18 17 16 20 20 C 1.54271 * 110.03021 * 175.55566 * 16 15 9 21 21 H 0.96998 * 120.00585 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.50311 * 60.85878 * 11 9 7 23 23 H 1.09001 * 109.53503 * 300.76333 * 11 9 7 24 24 H 1.09005 * 109.52345 * 297.75009 * 12 11 9 25 25 H 1.08997 * 109.58045 * 177.58861 * 12 11 9 26 26 H 1.08997 * 109.50300 * 182.40198 * 13 12 11 27 27 H 1.09005 * 109.50059 * 62.29125 * 13 12 11 28 28 H 1.08998 * 109.46297 * 299.16413 * 14 13 12 29 29 H 1.09004 * 109.45507 * 179.18823 * 14 13 12 30 30 H 1.09000 * 110.05592 * 54.14277 * 16 15 9 31 31 H 1.08995 * 110.02836 * 359.97438 * 17 16 15 32 32 H 1.08996 * 110.03246 * 121.38375 * 17 16 15 33 33 H 1.08992 * 110.48689 * 95.09597 * 18 17 16 34 34 H 1.09003 * 110.48186 * 217.73123 * 18 17 16 35 35 H 1.09003 * 110.72130 * 279.57974 * 19 18 17 36 36 H 1.08994 * 110.92189 * 156.29963 * 19 18 17 37 37 H 1.09005 * 110.48868 * 261.57030 * 20 16 15 38 38 H 1.08997 * 110.48603 * 24.08477 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8748 -0.6807 0.8893 11 6 4.0210 -0.4710 -1.2500 12 6 5.5520 -0.4909 -1.2565 13 6 6.0359 -1.9429 -1.2078 14 6 5.4681 -2.6232 0.0398 15 7 4.0008 -2.5785 -0.0010 16 6 3.4193 -3.3423 1.1109 17 6 3.9456 -2.8036 2.4527 18 6 4.6872 -3.9706 3.1368 19 6 4.0649 -5.2397 2.5017 20 6 3.8597 -4.8184 1.0253 21 1 -0.4851 0.8400 0.0004 22 1 3.6705 0.5611 -1.2414 23 1 3.6467 -0.9750 -2.1411 24 1 5.9270 0.0474 -0.3860 25 1 5.9196 -0.0148 -2.1655 26 1 7.1250 -1.9624 -1.1692 27 1 5.6933 -2.4707 -2.0980 28 1 5.8222 -2.1032 0.9299 29 1 5.7991 -3.6613 0.0698 30 1 2.3317 -3.2749 1.0822 31 1 4.6328 -1.9757 2.2788 32 1 3.1135 -2.4739 3.0748 33 1 5.7548 -3.9216 2.9233 34 1 4.5113 -3.9559 4.2125 35 1 3.1106 -5.4779 2.9716 36 1 4.7494 -6.0851 2.5706 37 1 3.0803 -5.4227 0.5610 38 1 4.7923 -4.9065 0.4682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259168636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:20 Heat of formation + Delta-G solvation = -22.967275 kcal Electronic energy + Delta-G solvation = -16671.584459 eV Core-core repulsion = 14319.475368 eV Total energy + Delta-G solvation = -2352.109091 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81043 -37.73904 -34.88266 -33.39856 -32.04172 -29.57127 -28.22728 -26.96866 -24.52077 -23.01658 -21.45182 -20.99719 -19.76442 -18.71716 -17.51199 -16.61274 -16.35472 -15.62810 -15.17650 -15.01304 -14.93936 -14.66955 -14.04761 -13.82579 -13.63925 -12.98825 -12.68318 -12.44977 -12.38439 -12.16855 -12.03169 -11.89780 -11.86165 -11.80063 -11.48683 -11.30870 -11.28815 -10.96803 -10.65421 -10.57424 -8.84003 -8.29442 -6.30902 1.25276 1.29925 1.39770 2.28727 3.03385 3.24530 3.82106 3.84861 4.00309 4.11950 4.15557 4.23027 4.51682 4.56996 4.61350 4.65964 4.73989 4.75572 4.79862 4.83989 4.92958 4.97642 5.05956 5.08483 5.13340 5.17880 5.23507 5.24852 5.38219 5.42629 5.49334 5.55218 5.58406 5.75220 6.07921 6.51616 6.76320 6.82397 7.33735 8.86850 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.011786 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.643826 B = 2375.195796 C = 2991.561259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.041 0.959 9 C 0.196 3.804 10 H -0.016 1.016 11 C -0.120 4.120 12 C -0.121 4.121 13 C -0.107 4.107 14 C 0.046 3.954 15 N -0.529 5.529 16 C 0.084 3.916 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.114 4.114 21 H 0.264 0.736 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.343 -6.350 2.464 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.088 3.912 10 H 0.001 0.999 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.081 4.081 15 N -0.253 5.253 16 C -0.025 4.025 17 C -0.190 4.190 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.151 4.151 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.044 -6.460 2.008 15.588 hybrid contribution -0.518 1.601 0.694 1.820 sum 13.526 -4.859 2.702 14.624 Atomic orbital electron populations 1.70027 1.07910 1.27751 1.53204 1.25709 0.95390 1.02452 0.94771 0.85927 0.78861 0.79461 0.78624 1.19152 1.22640 1.17961 1.21286 0.90957 0.92968 1.48790 0.94080 1.19371 0.93008 0.86506 0.92317 0.99877 1.21908 0.96120 0.98004 0.99727 1.21653 0.94405 0.98118 1.01719 1.21554 1.00422 0.94431 0.98071 1.22266 0.87673 1.01135 0.97025 1.61956 1.06689 1.13089 1.43546 1.22256 0.98522 0.93783 0.87945 1.22693 0.99376 0.99038 0.97859 1.22298 0.99509 0.93646 0.99451 1.22474 1.01030 0.97575 0.94270 1.22488 1.01673 0.93377 0.97601 0.92654 0.94788 0.92563 0.92978 0.90591 0.89083 0.91582 0.95769 0.89120 0.93011 0.93157 0.94175 0.90710 0.91090 0.91932 0.89169 0.92316 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 2 C 0.01 0.82 5.45 84.65 0.46 1.28 16 3 Si 0.94 46.46 24.36 68.60 1.67 48.13 16 4 H -0.27 -12.43 6.87 99.48 0.68 -11.75 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.26 -11.89 6.53 99.48 0.65 -11.24 16 7 C -0.50 -29.24 8.44 25.60 0.22 -29.02 16 8 H 0.04 2.67 6.54 -2.91 -0.02 2.65 16 9 C 0.20 9.41 1.09 44.19 0.05 9.46 16 10 H -0.02 -0.81 6.00 -2.38 -0.01 -0.83 16 11 C -0.12 -5.20 4.84 30.64 0.15 -5.06 16 12 C -0.12 -4.01 6.00 30.67 0.18 -3.83 16 13 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 14 C 0.05 1.48 4.78 86.32 0.41 1.89 16 15 N -0.53 -21.74 4.49 -846.20 -3.80 -25.54 16 16 C 0.08 3.29 2.70 45.64 0.12 3.41 16 17 C -0.15 -5.35 5.45 31.32 0.17 -5.18 16 18 C -0.11 -2.86 6.84 31.70 0.22 -2.65 16 19 C -0.12 -2.79 6.91 31.91 0.22 -2.57 16 20 C -0.11 -3.39 6.31 31.67 0.20 -3.19 16 21 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.03 1.55 3.28 -2.39 -0.01 1.54 16 23 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.02 0.79 6.35 -2.39 -0.02 0.77 16 29 H 0.09 2.46 5.79 -2.39 -0.01 2.45 16 30 H 0.05 2.51 5.98 -2.39 -0.01 2.50 16 31 H 0.05 1.88 5.14 -2.39 -0.01 1.87 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.08 2.23 5.67 -2.39 -0.01 2.22 16 Total: -1.00 -66.23 270.84 1.70 -64.53 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.95 Total: 11.30 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 2.59 Total: -38.33 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.50 Total: -85.63 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -66.23 1.70 -64.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259168636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.563 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds