Wall clock time and date at job start Mon Mar 30 2020 03:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48496 * 109.47359 * 270.00106 * 3 2 1 5 5 H 1.48501 * 109.47045 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.46862 * 150.00168 * 3 2 1 7 7 C 1.37878 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99501 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00392 * 359.71742 * 7 2 1 10 10 C 1.53001 * 109.47408 * 180.28149 * 9 7 2 11 11 H 1.08995 * 110.01535 * 56.79820 * 10 9 7 12 12 C 1.54267 * 110.02756 * 295.35356 * 10 9 7 13 13 C 1.54884 * 104.19478 * 217.10658 * 12 10 9 14 14 C 1.54882 * 102.74978 * 37.94394 * 13 12 10 15 15 C 1.53876 * 110.03164 * 178.18970 * 10 9 7 16 16 H 1.08995 * 110.03122 * 238.56249 * 15 10 9 17 17 N 1.46904 * 110.03212 * 359.97438 * 15 10 9 18 18 C 1.48532 * 110.99707 * 160.56850 * 17 15 10 19 19 C 1.54942 * 103.22606 * 159.71883 * 18 17 15 20 20 C 1.54600 * 102.92183 * 322.59083 * 19 18 17 21 21 C 1.47900 * 110.99816 * 277.96402 * 17 15 10 22 22 H 0.97007 * 119.99366 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46994 * 300.28288 * 9 7 2 24 24 H 1.09000 * 109.46625 * 60.27671 * 9 7 2 25 25 H 1.08996 * 110.48807 * 335.78872 * 12 10 9 26 26 H 1.09001 * 110.48650 * 98.42854 * 12 10 9 27 27 H 1.09001 * 110.75529 * 279.63020 * 13 12 10 28 28 H 1.09001 * 110.91932 * 156.33694 * 13 12 10 29 29 H 1.09006 * 110.49288 * 203.37900 * 14 13 12 30 30 H 1.09003 * 110.48718 * 80.73539 * 14 13 12 31 31 H 1.08994 * 110.66792 * 278.15411 * 18 17 15 32 32 H 1.08998 * 110.66800 * 41.28941 * 18 17 15 33 33 H 1.08992 * 110.72648 * 204.22655 * 19 18 17 34 34 H 1.09001 * 110.72226 * 80.94360 * 19 18 17 35 35 H 1.09003 * 110.30486 * 263.04140 * 20 19 18 36 36 H 1.08994 * 110.30992 * 140.86732 * 20 19 18 37 37 H 1.08994 * 109.91724 * 333.51254 * 21 17 15 38 38 H 1.09001 * 109.91195 * 94.80562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 0.0053 10 6 2.2451 -3.6621 0.0105 11 1 2.9138 -3.5775 0.8671 12 6 3.0602 -3.6663 -1.2993 13 6 3.2362 -5.1686 -1.6323 14 6 1.8715 -5.7728 -1.2180 15 6 1.4893 -5.0015 0.0622 16 1 1.7920 -5.5672 0.9433 17 7 0.0404 -4.7609 0.0916 18 6 -0.7092 -5.9747 -0.3216 19 6 -2.1251 -5.7318 0.2589 20 6 -1.8306 -5.0454 1.6126 21 6 -0.4177 -4.4515 1.4634 22 1 -0.4849 0.8402 0.0004 23 1 0.6243 -2.5529 0.8956 24 1 0.6242 -2.5608 -0.8844 25 1 2.5094 -3.1616 -2.0929 26 1 4.0302 -3.1932 -1.1465 27 1 4.0451 -5.6024 -1.0445 28 1 3.4149 -5.3127 -2.6979 29 1 1.9740 -6.8370 -1.0058 30 1 1.1287 -5.6082 -1.9986 31 1 -0.7470 -6.0523 -1.4081 32 1 -0.2633 -6.8690 0.1137 33 1 -2.6470 -6.6764 0.4108 34 1 -2.7003 -5.0722 -0.3908 35 1 -1.8499 -5.7775 2.4200 36 1 -2.5558 -4.2539 1.8010 37 1 0.2549 -4.9059 2.1908 38 1 -0.4515 -3.3718 1.6089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:09 Heat of formation + Delta-G solvation = -6.013230 kcal Electronic energy + Delta-G solvation = -16267.382141 eV Core-core repulsion = 13916.008232 eV Total energy + Delta-G solvation = -2351.373908 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26988 -36.40043 -32.88900 -30.97028 -30.22852 -28.21238 -26.18626 -25.53433 -22.31744 -21.31222 -20.50290 -19.43981 -18.15201 -16.55610 -15.46430 -15.35502 -14.80676 -14.28401 -13.72828 -13.53483 -12.75364 -12.58483 -12.44659 -11.98827 -11.80720 -11.22221 -11.13408 -10.91529 -10.84667 -10.61969 -10.44286 -10.42275 -10.29878 -10.21995 -10.03931 -9.89867 -9.43775 -8.90639 -8.65522 -8.15318 -7.63151 -5.82511 -3.82279 3.39474 3.45804 3.48866 4.49980 4.59100 5.00411 5.05851 5.23506 5.32580 5.35058 5.52394 5.55419 5.63385 5.84225 5.91196 6.03640 6.08677 6.12675 6.14672 6.16206 6.26442 6.31205 6.37227 6.46140 6.50012 6.63000 6.72732 6.76403 6.95465 7.17735 7.36167 7.54913 7.80687 7.96355 8.19646 8.34843 8.66957 9.27330 9.79159 11.27938 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.009500 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.774421 B = 2946.744178 C = 3800.209807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.049 0.951 9 C 0.041 3.959 10 C -0.078 4.078 11 H 0.050 0.950 12 C -0.101 4.101 13 C -0.127 4.127 14 C -0.119 4.119 15 C 0.075 3.925 16 H 0.031 0.969 17 N -0.489 5.489 18 C 0.033 3.967 19 C -0.122 4.122 20 C -0.131 4.131 21 C 0.031 3.969 22 H 0.256 0.744 23 H 0.026 0.974 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -12.350 0.125 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.004 3.996 10 C -0.097 4.097 11 H 0.068 0.932 12 C -0.139 4.139 13 C -0.165 4.165 14 C -0.156 4.156 15 C -0.034 4.034 16 H 0.049 0.951 17 N -0.213 5.213 18 C -0.095 4.095 19 C -0.160 4.160 20 C -0.169 4.169 21 C -0.096 4.096 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.669 -11.793 -0.213 11.814 hybrid contribution 0.724 0.297 0.624 1.001 sum 0.056 -11.496 0.411 11.504 Atomic orbital electron populations 1.69985 1.05795 1.25956 1.51590 1.24966 0.94733 0.98706 0.95964 0.86762 0.79915 0.84356 0.77917 1.20917 1.21471 1.20160 1.21436 0.92830 0.91713 1.49420 0.93282 1.19180 0.92955 0.88948 0.98507 1.21851 0.97108 0.94651 0.96074 0.93175 1.22258 0.99512 0.93450 0.98643 1.22509 0.96322 0.97841 0.99830 1.22496 0.97795 0.97455 0.97888 1.22641 0.87916 0.97072 0.95760 0.95132 1.64947 1.03961 1.30447 1.21926 1.23210 0.93594 0.92249 1.00462 1.22450 0.96856 0.99819 0.96925 1.22411 0.97825 0.99637 0.96998 1.23172 0.93947 1.03303 0.89179 0.93408 0.95603 0.95360 0.91183 0.92789 0.92558 0.92416 0.93108 0.90787 0.90562 0.94870 0.91984 0.90767 0.92490 0.91148 0.94874 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.88 22.11 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.68 8.62 -34.44 -0.30 -14.98 16 8 H 0.05 1.38 7.62 -52.49 -0.40 0.98 16 9 C 0.04 1.06 3.27 -27.88 -0.09 0.97 16 10 C -0.08 -1.65 2.88 -89.50 -0.26 -1.91 16 11 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.10 -1.96 5.74 -25.07 -0.14 -2.10 16 13 C -0.13 -1.98 6.91 -24.75 -0.17 -2.15 16 14 C -0.12 -1.85 5.34 -25.08 -0.13 -1.99 16 15 C 0.07 1.36 2.64 -66.59 -0.18 1.18 16 16 H 0.03 0.54 7.54 -51.93 -0.39 0.15 16 17 N -0.49 -9.02 3.79 -221.17 -0.84 -9.86 16 18 C 0.03 0.49 5.30 -1.90 -0.01 0.48 16 19 C -0.12 -1.69 7.06 -24.87 -0.18 -1.86 16 20 C -0.13 -1.92 6.93 -25.37 -0.18 -2.10 16 21 C 0.03 0.56 5.81 -2.76 -0.02 0.55 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.70 4.61 -51.93 -0.24 0.46 16 24 H 0.03 0.80 7.82 -51.93 -0.41 0.40 16 25 H 0.07 1.49 7.81 -51.93 -0.41 1.08 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.19 6.87 -51.93 -0.36 0.84 16 31 H 0.08 1.11 7.20 -51.93 -0.37 0.73 16 32 H 0.03 0.47 7.98 -51.93 -0.41 0.05 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.57 7.41 -51.93 -0.38 0.18 16 38 H 0.10 2.19 5.73 -51.93 -0.30 1.89 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -29.87 286.07 -9.17 -39.03 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.61 Total: -1.83 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.75 Total: -22.36 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.10 Total: -36.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.87 -9.17 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.020 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds