Wall clock time and date at job start Mon Mar 30 2020 03:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48496 * 109.47359 * 270.00106 * 3 2 1 5 5 H 1.48501 * 109.47045 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.46862 * 150.00168 * 3 2 1 7 7 C 1.37878 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99501 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00392 * 359.71742 * 7 2 1 10 10 C 1.53001 * 109.47408 * 180.28149 * 9 7 2 11 11 H 1.08995 * 110.01535 * 56.79820 * 10 9 7 12 12 C 1.54267 * 110.02756 * 295.35356 * 10 9 7 13 13 C 1.54884 * 104.19478 * 217.10658 * 12 10 9 14 14 C 1.54882 * 102.74978 * 37.94394 * 13 12 10 15 15 C 1.53876 * 110.03164 * 178.18970 * 10 9 7 16 16 H 1.08995 * 110.03122 * 238.56249 * 15 10 9 17 17 N 1.46904 * 110.03212 * 359.97438 * 15 10 9 18 18 C 1.48532 * 110.99707 * 160.56850 * 17 15 10 19 19 C 1.54942 * 103.22606 * 159.71883 * 18 17 15 20 20 C 1.54600 * 102.92183 * 322.59083 * 19 18 17 21 21 C 1.47900 * 110.99816 * 277.96402 * 17 15 10 22 22 H 0.97007 * 119.99366 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46994 * 300.28288 * 9 7 2 24 24 H 1.09000 * 109.46625 * 60.27671 * 9 7 2 25 25 H 1.08996 * 110.48807 * 335.78872 * 12 10 9 26 26 H 1.09001 * 110.48650 * 98.42854 * 12 10 9 27 27 H 1.09001 * 110.75529 * 279.63020 * 13 12 10 28 28 H 1.09001 * 110.91932 * 156.33694 * 13 12 10 29 29 H 1.09006 * 110.49288 * 203.37900 * 14 13 12 30 30 H 1.09003 * 110.48718 * 80.73539 * 14 13 12 31 31 H 1.08994 * 110.66792 * 278.15411 * 18 17 15 32 32 H 1.08998 * 110.66800 * 41.28941 * 18 17 15 33 33 H 1.08992 * 110.72648 * 204.22655 * 19 18 17 34 34 H 1.09001 * 110.72226 * 80.94360 * 19 18 17 35 35 H 1.09003 * 110.30486 * 263.04140 * 20 19 18 36 36 H 1.08994 * 110.30992 * 140.86732 * 20 19 18 37 37 H 1.08994 * 109.91724 * 333.51254 * 21 17 15 38 38 H 1.09001 * 109.91195 * 94.80562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 0.0053 10 6 2.2451 -3.6621 0.0105 11 1 2.9138 -3.5775 0.8671 12 6 3.0602 -3.6663 -1.2993 13 6 3.2362 -5.1686 -1.6323 14 6 1.8715 -5.7728 -1.2180 15 6 1.4893 -5.0015 0.0622 16 1 1.7920 -5.5672 0.9433 17 7 0.0404 -4.7609 0.0916 18 6 -0.7092 -5.9747 -0.3216 19 6 -2.1251 -5.7318 0.2589 20 6 -1.8306 -5.0454 1.6126 21 6 -0.4177 -4.4515 1.4634 22 1 -0.4849 0.8402 0.0004 23 1 0.6243 -2.5529 0.8956 24 1 0.6242 -2.5608 -0.8844 25 1 2.5094 -3.1616 -2.0929 26 1 4.0302 -3.1932 -1.1465 27 1 4.0451 -5.6024 -1.0445 28 1 3.4149 -5.3127 -2.6979 29 1 1.9740 -6.8370 -1.0058 30 1 1.1287 -5.6082 -1.9986 31 1 -0.7470 -6.0523 -1.4081 32 1 -0.2633 -6.8690 0.1137 33 1 -2.6470 -6.6764 0.4108 34 1 -2.7003 -5.0722 -0.3908 35 1 -1.8499 -5.7775 2.4200 36 1 -2.5558 -4.2539 1.8010 37 1 0.2549 -4.9059 2.1908 38 1 -0.4515 -3.3718 1.6089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259528144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:09 Heat of formation + Delta-G solvation = -23.312988 kcal Electronic energy + Delta-G solvation = -16268.132314 eV Core-core repulsion = 13916.008232 eV Total energy + Delta-G solvation = -2352.124082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67615 -37.79485 -35.01777 -32.29064 -32.02801 -29.57176 -27.66337 -27.35652 -24.25309 -22.57034 -21.93346 -20.73299 -19.72135 -18.56674 -17.00526 -16.84152 -16.26434 -16.26093 -15.06165 -14.94815 -14.41970 -14.12645 -13.82391 -13.58894 -13.32210 -13.06704 -12.90896 -12.59287 -12.29289 -12.16503 -12.04646 -11.79690 -11.67164 -11.61408 -11.53379 -11.32094 -11.21948 -10.82366 -10.70823 -10.34090 -9.02756 -8.07971 -6.15773 1.38583 1.39533 1.49918 2.45159 3.18896 3.23712 3.71039 3.83879 3.88428 4.05708 4.13349 4.21717 4.41842 4.54580 4.66197 4.69108 4.75233 4.77764 4.85992 4.92514 4.96514 5.04048 5.10796 5.13709 5.17458 5.23855 5.30188 5.36362 5.41258 5.53384 5.61687 5.70885 6.08697 6.13521 6.21746 6.40804 6.49234 7.05459 7.50108 9.02517 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.009500 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.774421 B = 2946.744178 C = 3800.209807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.000 4.000 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.057 3.943 10 C -0.081 4.081 11 H 0.041 0.959 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.077 3.923 16 H 0.040 0.960 17 N -0.521 5.521 18 C 0.035 3.965 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.033 3.967 22 H 0.258 0.742 23 H 0.007 0.993 24 H -0.009 1.009 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -14.218 -0.059 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.020 3.980 10 C -0.100 4.100 11 H 0.059 0.941 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.032 4.032 16 H 0.058 0.942 17 N -0.246 5.246 18 C -0.092 4.092 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.095 4.095 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.009 0.991 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.141 -13.674 -0.400 13.680 hybrid contribution 0.455 0.913 0.696 1.235 sum 0.596 -12.761 0.296 12.778 Atomic orbital electron populations 1.70132 1.07449 1.26933 1.52491 1.25841 0.95639 1.02612 0.95575 0.85657 0.78776 0.79619 0.78232 1.20139 1.20930 1.19143 1.21855 0.93048 0.93217 1.49103 0.93291 1.18912 0.93089 0.90326 0.95715 1.21784 0.96473 0.94924 0.96808 0.94080 1.22177 0.98459 0.96669 0.96668 1.22458 0.97028 0.94207 1.01519 1.22468 0.97391 0.98856 0.96081 1.22572 0.87605 0.95290 0.97689 0.94201 1.64797 1.04519 1.33096 1.22159 1.23267 0.93679 0.91388 1.00882 1.22460 0.96397 1.00996 0.95667 1.22388 0.95273 1.00008 0.98712 1.22995 0.96413 1.00553 0.89534 0.93333 0.97489 0.99099 0.93992 0.93000 0.90522 0.90394 0.89845 0.91463 0.90145 0.92843 0.88553 0.92143 0.89773 0.91971 0.94328 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.95 46.18 29.54 68.60 2.03 48.21 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -31.51 8.62 25.60 0.22 -31.29 16 8 H 0.05 2.81 7.62 -2.91 -0.02 2.79 16 9 C 0.06 3.09 3.27 29.85 0.10 3.18 16 10 C -0.08 -3.50 2.88 -10.07 -0.03 -3.53 16 11 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 12 C -0.10 -3.95 5.74 31.67 0.18 -3.77 16 13 C -0.11 -3.25 6.91 31.88 0.22 -3.03 16 14 C -0.11 -3.15 5.34 31.67 0.17 -2.98 16 15 C 0.08 2.73 2.64 45.64 0.12 2.85 16 16 H 0.04 1.34 7.54 -2.39 -0.02 1.32 16 17 N -0.52 -19.28 3.79 -853.65 -3.23 -22.51 16 18 C 0.04 0.98 5.30 86.65 0.46 1.44 16 19 C -0.12 -3.01 7.06 31.80 0.22 -2.78 16 20 C -0.13 -3.59 6.93 31.47 0.22 -3.37 16 21 C 0.03 1.21 5.81 86.45 0.50 1.71 16 22 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 23 H 0.01 0.41 4.61 -2.38 -0.01 0.40 16 24 H -0.01 -0.58 7.82 -2.39 -0.02 -0.60 16 25 H 0.04 1.83 7.81 -2.39 -0.02 1.81 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.07 2.02 6.87 -2.39 -0.02 2.01 16 31 H 0.08 2.17 7.20 -2.39 -0.02 2.15 16 32 H 0.05 1.30 7.98 -2.39 -0.02 1.28 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.33 7.41 -2.39 -0.02 1.31 16 38 H 0.05 2.49 5.73 -2.39 -0.01 2.47 16 Total: -1.00 -67.10 286.07 2.93 -64.17 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.00 Total: 9.42 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 2.85 Total: -41.08 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.95 Total: -80.72 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.10 2.93 -64.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.861 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds