Wall clock time and date at job start Mon Mar 30 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48497 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47182 * 300.00087 * 3 2 1 6 6 H 1.48505 * 109.47051 * 59.99612 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99682 * 0.27985 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.72241 * 9 7 2 11 11 H 1.08997 * 110.01949 * 300.29431 * 10 9 7 12 12 C 1.54266 * 110.03090 * 61.68289 * 10 9 7 13 13 C 1.54897 * 104.19568 * 142.89371 * 12 10 9 14 14 C 1.54889 * 102.74740 * 322.06018 * 13 12 10 15 15 C 1.53875 * 110.03188 * 178.90010 * 10 9 7 16 16 H 1.09008 * 110.03047 * 121.43177 * 15 10 9 17 17 N 1.46896 * 110.03214 * 0.02562 * 15 10 9 18 18 C 1.48534 * 111.00415 * 82.81211 * 17 15 10 19 19 C 1.54938 * 103.22871 * 159.72032 * 18 17 15 20 20 C 1.54602 * 102.92092 * 322.58688 * 19 18 17 21 21 C 1.47901 * 111.00019 * 200.21194 * 17 15 10 22 22 H 0.97008 * 119.99578 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46988 * 299.71787 * 9 7 2 24 24 H 1.09000 * 109.47387 * 59.72582 * 9 7 2 25 25 H 1.08996 * 110.48936 * 261.57068 * 12 10 9 26 26 H 1.08998 * 110.48911 * 24.22161 * 12 10 9 27 27 H 1.09001 * 110.75170 * 80.36968 * 13 12 10 28 28 H 1.08995 * 110.75728 * 203.55904 * 13 12 10 29 29 H 1.08999 * 110.48655 * 156.62104 * 14 13 12 30 30 H 1.09004 * 110.48410 * 279.12819 * 14 13 12 31 31 H 1.08999 * 110.66914 * 278.15970 * 18 17 15 32 32 H 1.09009 * 110.66170 * 41.28404 * 18 17 15 33 33 H 1.09001 * 110.72253 * 204.23387 * 19 18 17 34 34 H 1.08999 * 110.87761 * 81.01502 * 19 18 17 35 35 H 1.08994 * 110.30748 * 263.04190 * 20 19 18 36 36 H 1.08991 * 110.30647 * 140.87349 * 20 19 18 37 37 H 1.09000 * 109.91421 * 333.50464 * 21 17 15 38 38 H 1.09002 * 109.92225 * 94.79974 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4991 -0.0053 10 6 2.2451 -3.6621 -0.0104 11 1 2.8802 -3.6061 -0.8944 12 6 3.1109 -3.6227 1.2658 13 6 3.3012 -5.1132 1.6420 14 6 1.9217 -5.7302 1.3020 15 6 1.4889 -5.0021 0.0114 16 1 1.7578 -5.5968 -0.8617 17 7 0.0398 -4.7619 0.0300 18 6 -0.4765 -4.5151 -1.3407 19 6 -1.9915 -4.8108 -1.2074 20 6 -2.0251 -6.0116 -0.2342 21 6 -0.6880 -5.9495 0.5272 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5608 0.8845 24 1 0.6242 -2.5530 -0.8955 25 1 4.0738 -3.1555 1.0592 26 1 2.5913 -3.0914 2.0631 27 1 4.0867 -5.5668 1.0376 28 1 3.5234 -5.2182 2.7039 29 1 2.0168 -6.8010 1.1219 30 1 1.2107 -5.5412 2.1063 31 1 -0.3112 -3.4781 -1.6331 32 1 -0.0129 -5.1959 -2.0547 33 1 -2.4174 -5.0848 -2.1727 34 1 -2.5184 -3.9559 -0.7836 35 1 -2.1013 -6.9465 -0.7893 36 1 -2.8602 -5.9132 0.4593 37 1 -0.1067 -6.8504 0.3307 38 1 -0.8739 -5.8504 1.5967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:11 Heat of formation + Delta-G solvation = -6.183227 kcal Electronic energy + Delta-G solvation = -16272.174837 eV Core-core repulsion = 13920.793557 eV Total energy + Delta-G solvation = -2351.381280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.26710 -36.39458 -32.89015 -30.96140 -30.24689 -28.19864 -26.16763 -25.53512 -22.31876 -21.17762 -20.74849 -19.32494 -18.11813 -16.57780 -15.43905 -15.27223 -14.87281 -14.28641 -13.87461 -13.44945 -12.82384 -12.46726 -12.24834 -12.08835 -11.91966 -11.25992 -11.14020 -10.96939 -10.82613 -10.55543 -10.41576 -10.38246 -10.27070 -10.20824 -10.08793 -9.90944 -9.42717 -8.91651 -8.64550 -8.15060 -7.62482 -5.82655 -3.82344 3.38416 3.46187 3.49991 4.50759 4.59184 5.01680 5.05774 5.21348 5.31258 5.34589 5.52282 5.54944 5.67869 5.84549 5.90991 6.03204 6.07107 6.12942 6.16596 6.18316 6.26362 6.32026 6.37379 6.45324 6.55982 6.64639 6.67487 6.76305 6.96192 7.17941 7.36670 7.54613 7.80725 7.96272 8.19280 8.35494 8.66881 9.27579 9.79185 11.27792 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.009504 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.446089 B = 2945.343447 C = 3809.756799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.050 0.950 9 C 0.042 3.958 10 C -0.078 4.078 11 H 0.049 0.951 12 C -0.100 4.100 13 C -0.127 4.127 14 C -0.118 4.118 15 C 0.075 3.925 16 H 0.031 0.969 17 N -0.489 5.489 18 C 0.029 3.971 19 C -0.123 4.123 20 C -0.130 4.130 21 C 0.035 3.965 22 H 0.256 0.744 23 H 0.031 0.969 24 H 0.023 0.977 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -12.249 0.071 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.005 3.995 10 C -0.097 4.097 11 H 0.068 0.932 12 C -0.138 4.138 13 C -0.165 4.165 14 C -0.156 4.156 15 C -0.034 4.034 16 H 0.049 0.951 17 N -0.213 5.213 18 C -0.098 4.098 19 C -0.161 4.161 20 C -0.168 4.168 21 C -0.093 4.093 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.580 -11.690 0.412 11.712 hybrid contribution 0.662 0.229 -0.557 0.895 sum 0.082 -11.461 -0.145 11.463 Atomic orbital electron populations 1.69998 1.05790 1.25838 1.51671 1.24970 0.94732 0.98719 0.95975 0.86709 0.80207 0.84703 0.77374 1.19980 1.21310 1.21264 1.21473 0.92890 0.91677 1.49277 0.93183 1.19167 0.92962 0.88976 0.98430 1.21842 0.96935 0.94645 0.96247 0.93222 1.22257 0.99273 0.93577 0.98707 1.22514 0.96199 0.97896 0.99928 1.22507 0.97572 0.97531 0.97978 1.22627 0.87928 0.97138 0.95673 0.95117 1.64944 1.03311 1.32867 1.20183 1.23561 0.93597 1.03060 0.89573 1.22467 0.96955 0.98208 0.98442 1.22389 0.97795 0.98228 0.98433 1.22844 0.93935 0.92517 1.00048 0.93470 0.95099 0.95869 0.92798 0.91117 0.92565 0.92417 0.93155 0.90831 0.87638 0.95137 0.91933 0.90437 0.92387 0.91532 0.94680 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.51 -14.61 8.57 -34.44 -0.30 -14.90 16 8 H 0.05 1.40 7.52 -52.49 -0.39 1.01 16 9 C 0.04 1.07 3.26 -27.88 -0.09 0.98 16 10 C -0.08 -1.64 2.93 -89.50 -0.26 -1.90 16 11 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 12 C -0.10 -1.95 5.57 -25.07 -0.14 -2.09 16 13 C -0.13 -1.99 6.91 -24.73 -0.17 -2.16 16 14 C -0.12 -1.86 5.10 -25.02 -0.13 -1.98 16 15 C 0.08 1.36 2.62 -66.54 -0.17 1.18 16 16 H 0.03 0.54 7.67 -51.92 -0.40 0.14 16 17 N -0.49 -9.03 3.70 -221.09 -0.82 -9.85 16 18 C 0.03 0.52 5.93 -1.90 -0.01 0.51 16 19 C -0.12 -1.86 7.06 -24.87 -0.18 -2.04 16 20 C -0.13 -1.76 6.93 -25.37 -0.18 -1.93 16 21 C 0.03 0.53 5.38 -2.75 -0.01 0.51 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 24 H 0.02 0.63 4.78 -51.93 -0.25 0.38 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.51 7.85 -51.93 -0.41 1.10 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.69 7.99 -51.93 -0.41 0.28 16 30 H 0.07 1.20 7.14 -51.93 -0.37 0.83 16 31 H 0.11 2.21 5.44 -51.93 -0.28 1.92 16 32 H 0.03 0.50 7.72 -51.92 -0.40 0.10 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.49 7.17 -51.93 -0.37 0.12 16 38 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -29.76 285.75 -9.14 -38.90 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.61 Total: -1.80 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.74 Total: -22.29 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.08 Total: -36.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.76 -9.14 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.719 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds