Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47046 * 269.99435 * 3 2 1 5 5 H 1.48499 * 109.47120 * 29.99525 * 3 2 1 6 6 H 1.48504 * 109.47088 * 149.99376 * 3 2 1 7 7 C 1.37879 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99924 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46232 * 60.02897 * 9 7 2 11 11 C 1.53036 * 109.46392 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.27788 * 60.83905 * 11 9 7 13 13 H 1.09007 * 109.52268 * 297.75177 * 12 11 9 14 14 C 1.52999 * 109.52253 * 177.56250 * 12 11 9 15 15 C 1.54272 * 110.03136 * 177.90885 * 14 12 11 16 16 C 1.54961 * 104.16027 * 217.13307 * 15 14 12 17 17 C 1.54891 * 102.77448 * 37.88589 * 16 15 14 18 18 C 1.53866 * 110.03814 * 60.69123 * 14 12 11 19 19 C 1.53123 * 109.16001 * 57.65365 * 12 11 9 20 20 C 1.53032 * 109.27911 * 302.34817 * 19 12 11 21 21 N 1.46842 * 109.46596 * 300.05740 * 9 7 2 22 22 H 0.97001 * 119.99762 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.50632 * 180.78197 * 11 9 7 24 24 H 1.09006 * 109.50216 * 300.89991 * 11 9 7 25 25 H 1.08996 * 110.01403 * 299.29616 * 14 12 11 26 26 H 1.08999 * 110.48211 * 335.78398 * 15 14 12 27 27 H 1.09007 * 110.48515 * 98.42383 * 15 14 12 28 28 H 1.08998 * 110.72153 * 279.57540 * 16 15 14 29 29 H 1.09003 * 110.76445 * 156.22214 * 16 15 14 30 30 H 1.09001 * 110.48405 * 203.40074 * 17 16 15 31 31 H 1.09001 * 110.59676 * 80.82407 * 17 16 15 32 32 H 1.09004 * 110.03541 * 238.57097 * 18 14 12 33 33 H 1.09004 * 110.02779 * 359.97438 * 18 14 12 34 34 H 1.08996 * 109.50416 * 182.40514 * 19 12 11 35 35 H 1.08998 * 109.53365 * 62.30832 * 19 12 11 36 36 H 1.09003 * 109.46473 * 299.16126 * 20 19 12 37 37 H 1.08995 * 109.46713 * 179.19608 * 20 19 12 38 38 H 1.00901 * 110.99832 * 65.82135 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8744 -0.6806 0.8914 11 6 4.0214 -2.6371 0.0010 12 6 3.5263 -3.3481 -1.2615 13 1 2.4367 -3.3817 -1.2571 14 6 4.0829 -4.7728 -1.2976 15 6 3.5489 -5.5175 -2.5387 16 6 3.3206 -6.9673 -2.0416 17 6 2.7831 -6.7560 -0.6044 18 6 3.5966 -5.5601 -0.0683 19 6 4.0094 -2.5785 -2.4940 20 6 3.5000 -1.1373 -2.4215 21 7 4.0013 -0.5010 -1.1971 22 1 -0.4850 0.8401 -0.0004 23 1 5.1113 -2.6380 0.0154 24 1 3.6448 -3.1562 0.8824 25 1 5.1724 -4.7472 -1.3176 26 1 2.6099 -5.0766 -2.8733 27 1 4.2869 -5.5001 -3.3408 28 1 4.2588 -7.5218 -2.0255 29 1 2.5807 -7.4758 -2.6599 30 1 2.9621 -7.6426 0.0039 31 1 1.7200 -6.5163 -0.6240 32 1 4.4501 -5.9174 0.5079 33 1 2.9643 -4.9270 0.5543 34 1 3.6244 -3.0557 -3.3951 35 1 5.0991 -2.5784 -2.5195 36 1 2.4100 -1.1374 -2.4106 37 1 3.8541 -0.5827 -3.2904 38 1 3.7581 0.4780 -1.1734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = -25.919848 kcal Electronic energy + Delta-G solvation = -16383.531698 eV Core-core repulsion = 14031.294574 eV Total energy + Delta-G solvation = -2352.237124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.02629 -36.79216 -32.68724 -31.59663 -30.20213 -28.31152 -27.25203 -25.03737 -22.39655 -21.55771 -20.15784 -19.09069 -18.66845 -16.42035 -15.99055 -15.36821 -14.74002 -14.25777 -13.52107 -13.16860 -13.08224 -12.88107 -12.45875 -12.41410 -11.88423 -11.40033 -11.23314 -10.88191 -10.83534 -10.74078 -10.60727 -10.46805 -10.38454 -10.22466 -9.93395 -9.74607 -9.49678 -9.25288 -8.94269 -8.65162 -7.18372 -6.14735 -4.14482 3.18221 3.31817 3.32463 4.31245 4.87505 4.93994 5.02126 5.11862 5.44696 5.57729 5.66511 5.72107 5.77061 5.87844 5.93316 6.01025 6.06888 6.13707 6.15934 6.30341 6.37608 6.40029 6.47694 6.54887 6.55508 6.58804 6.66899 6.80476 6.94312 7.01034 7.09092 7.26558 7.34353 7.69563 8.08214 8.41818 8.57175 8.91309 9.47476 10.98310 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040015 B = 0.008459 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.572264 B = 3309.432211 C = 3541.188324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.166 3.834 10 H 0.038 0.962 11 C -0.085 4.085 12 C -0.072 4.072 13 H 0.079 0.921 14 C -0.086 4.086 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.098 4.098 20 C 0.061 3.939 21 N -0.692 5.692 22 H 0.263 0.737 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -9.182 -3.695 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.058 3.942 10 H 0.056 0.944 11 C -0.123 4.123 12 C -0.090 4.090 13 H 0.097 0.903 14 C -0.104 4.104 15 C -0.156 4.156 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.136 4.136 20 C -0.069 4.069 21 N -0.327 5.327 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.756 -9.402 -3.688 12.734 hybrid contribution -0.652 1.352 0.003 1.501 sum 7.104 -8.050 -3.686 11.352 Atomic orbital electron populations 1.69910 1.06155 1.26855 1.50478 1.25047 0.94764 0.98944 0.94547 0.87078 0.80497 0.84295 0.78451 1.20403 1.21930 1.18389 1.21688 0.90441 0.94510 1.50598 0.90609 1.19629 0.93913 0.91614 0.89020 0.94371 1.21426 0.98107 0.96192 0.96606 1.21209 1.00960 0.91588 0.95266 0.90274 1.21836 0.99355 0.95383 0.93840 1.22455 1.01016 0.94666 0.97481 1.22504 1.00188 0.97123 0.96451 1.22353 1.00021 0.97900 0.95938 1.22248 0.99381 0.96442 0.97908 1.21483 0.99780 0.95248 0.97097 1.21655 0.99295 0.94204 0.91744 1.61194 1.62855 1.05057 1.03571 0.92691 0.93961 0.92621 0.91953 0.91407 0.92337 0.92114 0.92238 0.92475 0.91721 0.92650 0.90848 0.93056 0.92852 0.93240 0.93679 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.35 24.60 -169.99 -4.18 17.17 16 4 H -0.28 -6.64 7.02 56.52 0.40 -6.24 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.53 -14.51 7.05 -34.44 -0.24 -14.75 16 8 H 0.08 2.24 7.01 -52.48 -0.37 1.87 16 9 C 0.17 3.93 2.58 -68.88 -0.18 3.75 16 10 H 0.04 0.95 7.20 -51.93 -0.37 0.57 16 11 C -0.09 -1.72 4.56 -26.65 -0.12 -1.84 16 12 C -0.07 -1.32 1.28 -90.49 -0.12 -1.44 16 13 H 0.08 1.69 6.72 -51.93 -0.35 1.34 16 14 C -0.09 -1.29 2.50 -89.50 -0.22 -1.52 16 15 C -0.12 -1.61 5.36 -25.03 -0.13 -1.74 16 16 C -0.13 -1.50 6.91 -24.70 -0.17 -1.67 16 17 C -0.12 -1.60 6.83 -25.08 -0.17 -1.77 16 18 C -0.12 -1.77 5.95 -25.62 -0.15 -1.92 16 19 C -0.10 -1.77 5.13 -26.65 -0.14 -1.91 16 20 C 0.06 1.27 6.30 -3.86 -0.02 1.25 16 21 N -0.69 -15.72 6.55 -108.03 -0.71 -16.43 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.11 6.60 -51.93 -0.34 0.76 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.99 7.74 -51.93 -0.40 0.59 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 34 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.18 6.99 -51.93 -0.36 0.82 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.31 7.32 4.17 -39.29 -0.16 7.16 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -28.55 275.56 -8.20 -36.76 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.47 Total: 6.29 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -1.77 Total: -21.70 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.07 Total: -42.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.18 Total: 17.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.55 -8.20 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.837 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds