Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47046 * 269.99435 * 3 2 1 5 5 H 1.48499 * 109.47120 * 29.99525 * 3 2 1 6 6 H 1.48504 * 109.47088 * 149.99376 * 3 2 1 7 7 C 1.37879 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99924 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46232 * 60.02897 * 9 7 2 11 11 C 1.53036 * 109.46392 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.27788 * 60.83905 * 11 9 7 13 13 H 1.09007 * 109.52268 * 297.75177 * 12 11 9 14 14 C 1.52999 * 109.52253 * 177.56250 * 12 11 9 15 15 C 1.54272 * 110.03136 * 177.90885 * 14 12 11 16 16 C 1.54961 * 104.16027 * 217.13307 * 15 14 12 17 17 C 1.54891 * 102.77448 * 37.88589 * 16 15 14 18 18 C 1.53866 * 110.03814 * 60.69123 * 14 12 11 19 19 C 1.53123 * 109.16001 * 57.65365 * 12 11 9 20 20 C 1.53032 * 109.27911 * 302.34817 * 19 12 11 21 21 N 1.46842 * 109.46596 * 300.05740 * 9 7 2 22 22 H 0.97001 * 119.99762 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.50632 * 180.78197 * 11 9 7 24 24 H 1.09006 * 109.50216 * 300.89991 * 11 9 7 25 25 H 1.08996 * 110.01403 * 299.29616 * 14 12 11 26 26 H 1.08999 * 110.48211 * 335.78398 * 15 14 12 27 27 H 1.09007 * 110.48515 * 98.42383 * 15 14 12 28 28 H 1.08998 * 110.72153 * 279.57540 * 16 15 14 29 29 H 1.09003 * 110.76445 * 156.22214 * 16 15 14 30 30 H 1.09001 * 110.48405 * 203.40074 * 17 16 15 31 31 H 1.09001 * 110.59676 * 80.82407 * 17 16 15 32 32 H 1.09004 * 110.03541 * 238.57097 * 18 14 12 33 33 H 1.09004 * 110.02779 * 359.97438 * 18 14 12 34 34 H 1.08996 * 109.50416 * 182.40514 * 19 12 11 35 35 H 1.08998 * 109.53365 * 62.30832 * 19 12 11 36 36 H 1.09003 * 109.46473 * 299.16126 * 20 19 12 37 37 H 1.08995 * 109.46713 * 179.19608 * 20 19 12 38 38 H 1.00901 * 110.99832 * 65.82135 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8744 -0.6806 0.8914 11 6 4.0214 -2.6371 0.0010 12 6 3.5263 -3.3481 -1.2615 13 1 2.4367 -3.3817 -1.2571 14 6 4.0829 -4.7728 -1.2976 15 6 3.5489 -5.5175 -2.5387 16 6 3.3206 -6.9673 -2.0416 17 6 2.7831 -6.7560 -0.6044 18 6 3.5966 -5.5601 -0.0683 19 6 4.0094 -2.5785 -2.4940 20 6 3.5000 -1.1373 -2.4215 21 7 4.0013 -0.5010 -1.1971 22 1 -0.4850 0.8401 -0.0004 23 1 5.1113 -2.6380 0.0154 24 1 3.6448 -3.1562 0.8824 25 1 5.1724 -4.7472 -1.3176 26 1 2.6099 -5.0766 -2.8733 27 1 4.2869 -5.5001 -3.3408 28 1 4.2588 -7.5218 -2.0255 29 1 2.5807 -7.4758 -2.6599 30 1 2.9621 -7.6426 0.0039 31 1 1.7200 -6.5163 -0.6240 32 1 4.4501 -5.9174 0.5079 33 1 2.9643 -4.9270 0.5543 34 1 3.6244 -3.0557 -3.3951 35 1 5.0991 -2.5784 -2.5195 36 1 2.4100 -1.1374 -2.4106 37 1 3.8541 -0.5827 -3.2904 38 1 3.7581 0.4780 -1.1734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259535295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = -43.958487 kcal Electronic energy + Delta-G solvation = -16384.313912 eV Core-core repulsion = 14031.294574 eV Total energy + Delta-G solvation = -2353.019338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48067 -38.24348 -34.64284 -33.26904 -31.94125 -29.46578 -28.57111 -27.07109 -23.93458 -23.20756 -21.26599 -20.56452 -20.29087 -18.36627 -17.82478 -16.63757 -16.12233 -15.94801 -15.24586 -14.89858 -14.56920 -14.21946 -14.13994 -13.95429 -13.57908 -13.13982 -12.89360 -12.36149 -12.25040 -12.12085 -11.86805 -11.84660 -11.72625 -11.67714 -11.54909 -11.38394 -11.02900 -10.89220 -10.74437 -10.59829 -9.10508 -8.35782 -6.39255 1.20657 1.28815 1.37249 2.22584 2.96890 3.63109 3.75752 3.84604 3.89232 4.18830 4.28943 4.32805 4.64377 4.66666 4.70238 4.80378 4.82033 4.86677 4.90075 4.91674 4.95339 5.06320 5.12446 5.16364 5.20957 5.28806 5.32001 5.36530 5.44319 5.54356 5.55945 5.60764 5.65892 5.83597 6.05909 6.53750 6.54402 6.67906 7.25895 8.80776 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040015 B = 0.008459 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.572264 B = 3309.432211 C = 3541.188324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.928 3.072 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.035 0.965 9 C 0.164 3.836 10 H 0.031 0.969 11 C -0.082 4.082 12 C -0.066 4.066 13 H 0.037 0.963 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.092 4.092 20 C 0.057 3.943 21 N -0.684 5.684 22 H 0.264 0.736 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.010 0.990 37 H 0.070 0.930 38 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -9.903 -4.679 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.168 1.168 7 C -0.565 4.565 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.049 0.951 11 C -0.120 4.120 12 C -0.084 4.084 13 H 0.056 0.944 14 C -0.099 4.099 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.130 4.130 20 C -0.073 4.073 21 N -0.318 5.318 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.462 -10.138 -4.680 15.302 hybrid contribution -1.547 1.521 0.324 2.194 sum 8.915 -8.617 -4.355 13.141 Atomic orbital electron populations 1.70062 1.08015 1.27791 1.52600 1.25857 0.95474 1.02775 0.94470 0.86079 0.79588 0.79631 0.79254 1.18911 1.22056 1.16802 1.21877 0.92518 0.92882 1.49262 0.94638 1.19626 0.91324 0.94068 0.89371 0.95080 1.21387 0.99089 0.93972 0.97523 1.21081 0.98497 0.94065 0.94787 0.94445 1.21787 0.99981 0.93094 0.95003 1.22447 1.00563 0.95399 0.97202 1.22489 1.01356 0.96252 0.95413 1.22362 0.98855 0.97892 0.97211 1.22249 0.99707 0.96635 0.97589 1.21471 1.00783 0.93144 0.97578 1.21792 0.97035 0.96602 0.91866 1.61235 1.62112 1.04763 1.03645 0.92700 0.91921 0.93159 0.90390 0.93223 0.90468 0.90195 0.91204 0.90603 0.93370 0.90974 0.93787 0.91109 0.90900 0.97147 0.91195 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.01 0.70 5.47 84.65 0.46 1.17 16 3 Si 0.93 44.30 24.60 68.60 1.69 45.99 16 4 H -0.26 -11.90 7.02 99.48 0.70 -11.21 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.24 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -29.71 7.05 25.60 0.18 -29.53 16 8 H 0.04 2.24 7.01 -2.91 -0.02 2.22 16 9 C 0.16 7.77 2.58 44.19 0.11 7.89 16 10 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 11 C -0.08 -3.26 4.56 30.65 0.14 -3.12 16 12 C -0.07 -2.39 1.28 -10.71 -0.01 -2.40 16 13 H 0.04 1.67 6.72 -2.38 -0.02 1.65 16 14 C -0.08 -2.26 2.50 -10.07 -0.03 -2.29 16 15 C -0.12 -2.93 5.36 31.70 0.17 -2.76 16 16 C -0.12 -2.48 6.91 31.91 0.22 -2.26 16 17 C -0.13 -3.05 6.83 31.67 0.22 -2.83 16 18 C -0.12 -3.45 5.95 31.31 0.19 -3.27 16 19 C -0.09 -3.13 5.13 30.65 0.16 -2.98 16 20 C 0.06 2.31 6.30 86.33 0.54 2.85 16 21 N -0.68 -30.05 6.55 -495.69 -3.25 -33.29 16 22 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.05 2.03 6.60 -2.38 -0.02 2.01 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.40 7.74 -2.39 -0.02 1.38 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.47 6.38 -2.38 -0.02 1.45 16 34 H 0.07 2.14 7.33 -2.39 -0.02 2.12 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.01 0.50 6.99 -2.39 -0.02 0.48 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.31 13.83 4.17 -89.69 -0.37 13.45 16 Total: -1.00 -63.29 275.56 1.67 -61.62 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.58 Total: 24.10 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 2.35 Total: -39.53 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -2.95 Total: -92.17 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.69 Total: 45.99 kcal Total: -63.29 1.67 -61.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.661 kcal (2) G-P(sol) polarization free energy of solvation -63.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds