Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48495 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47518 * 300.00103 * 3 2 1 6 6 H 1.48504 * 109.46812 * 60.00087 * 3 2 1 7 7 C 1.37875 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99750 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46496 * 299.98197 * 9 7 2 11 11 C 1.53038 * 109.45893 * 180.02562 * 9 7 2 12 12 C 1.53127 * 109.27941 * 299.17561 * 11 9 7 13 13 H 1.08998 * 109.57452 * 62.28001 * 12 11 9 14 14 C 1.53000 * 109.52391 * 182.44285 * 12 11 9 15 15 C 1.54268 * 110.02871 * 297.59119 * 14 12 11 16 16 C 1.54965 * 104.15739 * 217.13473 * 15 14 12 17 17 C 1.54893 * 102.77808 * 37.89033 * 16 15 14 18 18 C 1.53871 * 110.03051 * 180.37175 * 14 12 11 19 19 C 1.53117 * 109.15989 * 302.34585 * 12 11 9 20 20 C 1.53044 * 109.27792 * 57.65607 * 19 12 11 21 21 N 1.46830 * 109.45410 * 59.96301 * 9 7 2 22 22 H 0.97003 * 119.99879 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.50308 * 179.23775 * 11 9 7 24 24 H 1.09000 * 109.50697 * 59.11501 * 11 9 7 25 25 H 1.08995 * 110.01372 * 58.97860 * 14 12 11 26 26 H 1.08997 * 110.48579 * 335.78163 * 15 14 12 27 27 H 1.08999 * 110.48541 * 98.43134 * 15 14 12 28 28 H 1.08994 * 110.72300 * 279.57845 * 16 15 14 29 29 H 1.09004 * 110.76659 * 156.22010 * 16 15 14 30 30 H 1.09001 * 110.48962 * 203.40707 * 17 16 15 31 31 H 1.09003 * 110.48486 * 80.76010 * 17 16 15 32 32 H 1.08997 * 110.03429 * 238.56661 * 18 14 12 33 33 H 1.09001 * 110.03479 * 359.95615 * 18 14 12 34 34 H 1.09001 * 109.50874 * 297.71787 * 19 12 11 35 35 H 1.09000 * 109.50461 * 177.59307 * 19 12 11 36 36 H 1.09002 * 109.46396 * 60.83566 * 20 19 12 37 37 H 1.08994 * 109.46485 * 180.81491 * 20 19 12 38 38 H 1.00904 * 110.98205 * 294.15822 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6250 -2.5571 0.8898 11 6 2.2457 -3.6622 -0.0005 12 6 3.1097 -3.5885 -1.2625 13 1 3.6844 -2.6623 -1.2580 14 6 4.0652 -4.7830 -1.2986 15 6 5.0203 -4.7323 -0.0882 16 6 6.3714 -5.2425 -0.6500 17 6 6.4069 -4.6254 -2.0702 18 6 4.9461 -4.7154 -2.5583 19 6 2.2024 -3.6216 -2.4955 20 6 1.2090 -2.4597 -2.4232 21 7 0.4058 -2.5758 -1.1988 22 1 -0.4850 0.8401 -0.0004 23 1 1.7014 -4.6065 0.0131 24 1 2.8830 -3.5960 0.8812 25 1 3.4987 -5.7141 -1.2885 26 1 5.1205 -3.7099 0.2761 27 1 4.6645 -5.3883 0.7062 28 1 6.3813 -6.3311 -0.7015 29 1 7.2033 -4.8756 -0.0486 30 1 7.0628 -5.2034 -2.7211 31 1 6.7311 -3.5856 -2.0264 32 1 4.8080 -5.6142 -3.1592 33 1 4.6925 -3.8321 -3.1445 34 1 1.6574 -4.5652 -2.5211 35 1 2.8088 -3.5264 -3.3962 36 1 1.7542 -1.5159 -2.4116 37 1 0.5520 -2.4889 -3.2924 38 1 -0.3203 -1.8757 -1.1741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -36.219134 kcal Electronic energy + Delta-G solvation = -16345.879767 eV Core-core repulsion = 13993.196032 eV Total energy + Delta-G solvation = -2352.683735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89768 -36.54817 -32.73248 -31.11705 -29.86065 -28.25132 -27.04108 -25.03004 -22.06447 -21.60662 -20.07691 -19.01488 -18.63726 -15.99566 -15.65427 -15.18734 -14.54089 -14.44045 -13.32704 -13.05754 -12.95803 -12.78478 -12.44709 -12.12355 -11.48094 -11.13405 -11.02840 -10.89270 -10.75168 -10.70242 -10.64376 -10.52216 -10.39416 -10.30334 -10.07543 -9.68636 -9.28560 -9.09587 -8.90119 -8.39332 -6.89304 -5.97266 -4.12464 3.24484 3.33486 3.37217 4.39079 4.87970 4.94622 5.02771 5.22024 5.55478 5.67757 5.73351 5.83532 5.87695 5.94175 5.97444 6.05901 6.13174 6.18567 6.28082 6.34413 6.45636 6.49255 6.57114 6.58728 6.71356 6.72839 6.85246 6.96334 7.11818 7.18148 7.28254 7.39337 7.76899 7.84340 8.28839 8.75839 8.99041 9.19476 9.57393 10.99306 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030568 B = 0.008861 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.764840 B = 3159.032536 C = 3523.363397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.203 3.797 10 H 0.035 0.965 11 C -0.094 4.094 12 C -0.068 4.068 13 H 0.072 0.928 14 C -0.087 4.087 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.102 4.102 20 C 0.069 3.931 21 N -0.690 5.690 22 H 0.262 0.738 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -7.867 -3.587 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.094 3.906 10 H 0.053 0.947 11 C -0.132 4.132 12 C -0.087 4.087 13 H 0.090 0.910 14 C -0.106 4.106 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.140 4.140 20 C -0.062 4.062 21 N -0.324 5.324 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.228 -8.437 -3.595 12.321 hybrid contribution 0.664 2.025 0.012 2.131 sum 8.893 -6.412 -3.583 11.534 Atomic orbital electron populations 1.69744 1.05800 1.26690 1.51485 1.25017 0.94844 0.99086 0.94881 0.86613 0.80251 0.84054 0.77562 1.19832 1.21137 1.21016 1.21890 0.93502 0.91699 1.49958 0.92722 1.19067 0.90458 0.90971 0.90054 0.94673 1.21564 0.97266 0.98583 0.95776 1.21168 0.95189 0.96538 0.95801 0.90997 1.21865 0.95874 0.99220 0.93603 1.22439 0.94160 1.01399 0.97531 1.22516 0.97815 0.99753 0.96247 1.22357 0.96947 1.00559 0.96340 1.22251 0.94266 1.01432 0.97908 1.21571 0.96893 0.98988 0.96553 1.21541 0.94842 0.96710 0.93088 1.60929 1.15111 1.54671 1.01674 0.92798 0.94281 0.93469 0.91940 0.91225 0.92188 0.92108 0.92236 0.92507 0.91892 0.92673 0.91462 0.93035 0.93602 0.94705 0.94401 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.56 55.43 0.64 -24.50 16 2 C 0.06 1.72 5.39 -17.82 -0.10 1.62 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.19 6.47 -34.44 -0.22 -14.41 16 8 H 0.05 1.47 6.76 -52.49 -0.36 1.12 16 9 C 0.20 5.08 3.04 -68.88 -0.21 4.87 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.09 -1.98 4.61 -26.65 -0.12 -2.10 16 12 C -0.07 -1.29 1.28 -90.49 -0.12 -1.41 16 13 H 0.07 1.52 6.72 -51.93 -0.35 1.17 16 14 C -0.09 -1.35 2.50 -89.50 -0.22 -1.58 16 15 C -0.12 -1.71 5.36 -25.03 -0.13 -1.85 16 16 C -0.13 -1.55 6.91 -24.70 -0.17 -1.72 16 17 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 18 C -0.12 -1.67 5.95 -25.61 -0.15 -1.82 16 19 C -0.10 -1.93 5.08 -26.65 -0.14 -2.07 16 20 C 0.07 1.51 6.30 -3.81 -0.02 1.49 16 21 N -0.69 -16.79 6.60 -107.96 -0.71 -17.50 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.97 7.33 -51.93 -0.38 0.59 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.12 7.74 -51.93 -0.40 0.71 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.98 6.38 -51.93 -0.33 0.65 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.78 6.60 -51.93 -0.34 0.43 16 36 H 0.03 0.85 6.99 -51.93 -0.36 0.49 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.35 9.30 6.95 -39.29 -0.27 9.03 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -26.91 282.08 -9.20 -36.11 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.58 Total: 6.12 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.78 Total: -20.70 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.07 Total: -42.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.91 -9.20 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.110 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds