Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48495 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47518 * 300.00103 * 3 2 1 6 6 H 1.48504 * 109.46812 * 60.00087 * 3 2 1 7 7 C 1.37875 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99750 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46496 * 299.98197 * 9 7 2 11 11 C 1.53038 * 109.45893 * 180.02562 * 9 7 2 12 12 C 1.53127 * 109.27941 * 299.17561 * 11 9 7 13 13 H 1.08998 * 109.57452 * 62.28001 * 12 11 9 14 14 C 1.53000 * 109.52391 * 182.44285 * 12 11 9 15 15 C 1.54268 * 110.02871 * 297.59119 * 14 12 11 16 16 C 1.54965 * 104.15739 * 217.13473 * 15 14 12 17 17 C 1.54893 * 102.77808 * 37.89033 * 16 15 14 18 18 C 1.53871 * 110.03051 * 180.37175 * 14 12 11 19 19 C 1.53117 * 109.15989 * 302.34585 * 12 11 9 20 20 C 1.53044 * 109.27792 * 57.65607 * 19 12 11 21 21 N 1.46830 * 109.45410 * 59.96301 * 9 7 2 22 22 H 0.97003 * 119.99879 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.50308 * 179.23775 * 11 9 7 24 24 H 1.09000 * 109.50697 * 59.11501 * 11 9 7 25 25 H 1.08995 * 110.01372 * 58.97860 * 14 12 11 26 26 H 1.08997 * 110.48579 * 335.78163 * 15 14 12 27 27 H 1.08999 * 110.48541 * 98.43134 * 15 14 12 28 28 H 1.08994 * 110.72300 * 279.57845 * 16 15 14 29 29 H 1.09004 * 110.76659 * 156.22010 * 16 15 14 30 30 H 1.09001 * 110.48962 * 203.40707 * 17 16 15 31 31 H 1.09003 * 110.48486 * 80.76010 * 17 16 15 32 32 H 1.08997 * 110.03429 * 238.56661 * 18 14 12 33 33 H 1.09001 * 110.03479 * 359.95615 * 18 14 12 34 34 H 1.09001 * 109.50874 * 297.71787 * 19 12 11 35 35 H 1.09000 * 109.50461 * 177.59307 * 19 12 11 36 36 H 1.09002 * 109.46396 * 60.83566 * 20 19 12 37 37 H 1.08994 * 109.46485 * 180.81491 * 20 19 12 38 38 H 1.00904 * 110.98205 * 294.15822 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6250 -2.5571 0.8898 11 6 2.2457 -3.6622 -0.0005 12 6 3.1097 -3.5885 -1.2625 13 1 3.6844 -2.6623 -1.2580 14 6 4.0652 -4.7830 -1.2986 15 6 5.0203 -4.7323 -0.0882 16 6 6.3714 -5.2425 -0.6500 17 6 6.4069 -4.6254 -2.0702 18 6 4.9461 -4.7154 -2.5583 19 6 2.2024 -3.6216 -2.4955 20 6 1.2090 -2.4597 -2.4232 21 7 0.4058 -2.5758 -1.1988 22 1 -0.4850 0.8401 -0.0004 23 1 1.7014 -4.6065 0.0131 24 1 2.8830 -3.5960 0.8812 25 1 3.4987 -5.7141 -1.2885 26 1 5.1205 -3.7099 0.2761 27 1 4.6645 -5.3883 0.7062 28 1 6.3813 -6.3311 -0.7015 29 1 7.2033 -4.8756 -0.0486 30 1 7.0628 -5.2034 -2.7211 31 1 6.7311 -3.5856 -2.0264 32 1 4.8080 -5.6142 -3.1592 33 1 4.6925 -3.8321 -3.1445 34 1 1.6574 -4.5652 -2.5211 35 1 2.8088 -3.5264 -3.3962 36 1 1.7542 -1.5159 -2.4116 37 1 0.5520 -2.4889 -3.2924 38 1 -0.3203 -1.8757 -1.1741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259535296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -51.302548 kcal Electronic energy + Delta-G solvation = -16346.533833 eV Core-core repulsion = 13993.196032 eV Total energy + Delta-G solvation = -2353.337801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34590 -38.06239 -34.62263 -32.80065 -31.63599 -29.41781 -28.40545 -27.05222 -23.64927 -23.27850 -21.20181 -20.51074 -20.24981 -17.98130 -17.28349 -16.68497 -16.18622 -15.75312 -15.08136 -14.67806 -14.53172 -14.17440 -14.04851 -13.64272 -13.33060 -12.96358 -12.80634 -12.40427 -12.32986 -12.11131 -11.98589 -11.84672 -11.72548 -11.67862 -11.40442 -11.27674 -11.01557 -10.84297 -10.64428 -10.35592 -8.91489 -8.04840 -6.28541 1.32377 1.35882 1.45801 2.37121 3.09908 3.77577 3.83363 3.86772 4.09159 4.30899 4.38950 4.39907 4.67032 4.74630 4.76049 4.84097 4.85600 4.89629 4.96596 4.98609 5.04652 5.14304 5.19148 5.19395 5.28386 5.33538 5.38183 5.46649 5.55484 5.59533 5.62238 5.67254 5.77531 5.84749 6.22400 6.73190 6.95236 7.10775 7.44444 8.88456 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030568 B = 0.008861 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.764840 B = 3159.032536 C = 3523.363397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.199 3.801 10 H -0.002 1.002 11 C -0.086 4.086 12 C -0.060 4.060 13 H 0.045 0.955 14 C -0.083 4.083 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.095 4.095 20 C 0.067 3.933 21 N -0.689 5.689 22 H 0.263 0.737 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.053 0.947 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.078 -8.951 -4.586 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.090 3.910 10 H 0.016 0.984 11 C -0.124 4.124 12 C -0.079 4.079 13 H 0.064 0.936 14 C -0.101 4.101 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.133 4.133 20 C -0.063 4.063 21 N -0.321 5.321 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.920 -9.534 -4.596 14.506 hybrid contribution 0.089 2.364 0.343 2.390 sum 10.010 -7.170 -4.253 13.027 Atomic orbital electron populations 1.69852 1.06888 1.27368 1.52094 1.25701 0.95628 1.02088 0.94762 0.85680 0.79131 0.80372 0.77530 1.19495 1.20807 1.20685 1.22047 0.93199 0.92713 1.49710 0.93380 1.19048 0.90615 0.92220 0.89088 0.98390 1.21453 0.96685 0.97009 0.97265 1.21041 0.95179 0.97156 0.94503 0.93607 1.21802 0.95619 0.97442 0.95248 1.22433 0.95647 1.00399 0.97401 1.22498 0.96465 1.00667 0.96021 1.22364 0.96386 1.00570 0.96770 1.22239 0.94689 1.01859 0.96930 1.21538 0.96370 0.97764 0.97614 1.21647 0.95303 0.96873 0.92486 1.60964 1.15004 1.53763 1.02370 0.92753 0.93619 0.93561 0.91265 0.93404 0.91801 0.90499 0.91353 0.90319 0.92715 0.90851 0.92422 0.92137 0.91109 0.97523 0.92886 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.72 11.56 21.45 0.25 -52.47 16 2 C 0.02 0.95 5.39 84.65 0.46 1.40 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.54 -29.36 6.47 25.60 0.17 -29.19 16 8 H 0.05 2.64 6.76 -2.91 -0.02 2.62 16 9 C 0.20 10.24 3.04 44.20 0.13 10.37 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.09 -3.65 4.61 30.65 0.14 -3.51 16 12 C -0.06 -2.23 1.28 -10.71 -0.01 -2.24 16 13 H 0.05 1.94 6.72 -2.39 -0.02 1.92 16 14 C -0.08 -2.39 2.50 -10.07 -0.03 -2.42 16 15 C -0.12 -3.33 5.36 31.70 0.17 -3.16 16 16 C -0.12 -2.57 6.91 31.91 0.22 -2.35 16 17 C -0.12 -2.69 6.83 31.67 0.22 -2.47 16 18 C -0.12 -2.94 5.95 31.32 0.19 -2.76 16 19 C -0.10 -3.44 5.08 30.65 0.16 -3.29 16 20 C 0.07 2.94 6.30 86.32 0.54 3.48 16 21 N -0.69 -34.08 6.60 -495.48 -3.27 -37.36 16 22 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 1.93 7.33 -2.39 -0.02 1.91 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.51 7.74 -2.39 -0.02 1.49 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.53 6.38 -2.39 -0.02 1.52 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.23 6.60 -2.39 -0.02 2.21 16 36 H 0.01 0.32 6.99 -2.39 -0.02 0.31 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.34 18.31 6.95 -89.69 -0.62 17.69 16 Total: -1.00 -57.96 282.08 1.75 -56.21 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.39 Total: 23.64 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 2.35 Total: -36.13 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.02 Total: -89.83 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -57.96 1.75 -56.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.911 kcal (2) G-P(sol) polarization free energy of solvation -57.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds