Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99850 * 2 1 4 4 C 1.46906 * 110.99728 * 123.95151 * 2 1 3 5 5 C 1.52993 * 109.47378 * 66.04954 * 4 2 1 6 6 C 1.50696 * 109.47429 * 179.97438 * 5 4 2 7 7 C 1.36223 * 125.69058 * 124.99833 * 6 5 4 8 8 N 1.36418 * 107.19198 * 179.97438 * 7 6 5 9 9 C 1.46497 * 126.55330 * 179.97438 * 8 7 6 10 10 C 1.37542 * 106.88822 * 359.97438 * 8 7 6 11 11 C 1.40000 * 125.96315 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00088 * 0.02562 * 11 10 8 13 13 C 1.40235 * 120.00045 * 179.97438 * 11 10 8 14 14 N 1.30690 * 120.00223 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99919 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47382 * 60.00347 * 15 13 11 17 17 H 1.48501 * 109.47181 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47438 * 300.00274 * 15 13 11 19 19 N 1.32755 * 125.68796 * 304.69262 * 6 5 4 20 20 H 1.08996 * 109.47030 * 296.04770 * 1 2 3 21 21 H 1.08999 * 109.46702 * 56.04909 * 1 2 3 22 22 H 1.08996 * 109.46890 * 176.04778 * 1 2 3 23 23 H 1.09005 * 109.46478 * 183.95191 * 3 2 1 24 24 H 1.08997 * 109.46843 * 303.95082 * 3 2 1 25 25 H 1.08997 * 109.46760 * 63.95383 * 3 2 1 26 26 H 1.09004 * 109.47040 * 186.04743 * 4 2 1 27 27 H 1.09000 * 109.47033 * 306.04695 * 4 2 1 28 28 H 1.09004 * 109.46862 * 299.99897 * 5 4 2 29 29 H 1.09004 * 109.46998 * 59.99419 * 5 4 2 30 30 H 1.08004 * 126.40110 * 359.94145 * 7 6 5 31 31 H 1.09005 * 109.47020 * 90.02800 * 9 8 7 32 32 H 1.08998 * 109.47092 * 210.01940 * 9 8 7 33 33 H 1.08997 * 109.47656 * 330.02566 * 9 8 7 34 34 H 0.96991 * 120.00435 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2426 0.9705 6 6 2.1720 -3.0284 2.1372 7 6 1.4434 -3.8361 2.9573 8 7 2.3041 -4.3573 3.8784 9 6 1.9659 -5.2816 4.9636 10 6 3.5501 -3.8492 3.5935 11 6 4.7304 -4.1255 4.2938 12 1 4.7112 -4.7931 5.1424 13 6 5.9380 -3.5361 3.8926 14 7 5.9615 -2.7285 2.8653 15 14 7.5130 -3.9052 4.8265 16 1 7.7903 -5.3631 4.7729 17 1 8.6409 -3.1634 4.2078 18 1 7.3601 -3.4822 6.2418 19 7 3.4387 -3.0535 2.5338 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9163 -0.8525 25 1 1.7043 1.8723 0.9233 26 1 3.0797 -0.6611 1.1758 27 1 1.5610 -0.3872 2.0628 28 1 0.5472 -2.3475 0.9324 29 1 2.0659 -2.6213 0.0453 30 1 0.3825 -4.0275 2.8909 31 1 2.0654 -6.3081 4.6107 32 1 2.6417 -5.1189 5.8032 33 1 0.9391 -5.1055 5.2841 34 1 6.7966 -2.3206 2.5880 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259579496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = 36.165034 kcal Electronic energy + Delta-G solvation = -15228.333313 eV Core-core repulsion = 12775.248048 eV Total energy + Delta-G solvation = -2453.085265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76472 -38.48393 -35.29541 -34.65612 -32.13710 -30.09662 -28.43591 -27.58894 -26.83520 -24.66266 -22.15605 -21.34291 -20.34661 -18.60343 -17.21440 -16.43581 -16.23400 -16.22995 -15.82595 -15.46944 -14.79466 -14.65949 -14.01809 -13.60864 -13.46517 -13.24453 -13.11861 -12.87443 -12.82143 -12.59344 -12.45416 -12.31781 -12.16898 -11.91579 -11.63770 -11.04693 -9.71179 -9.66799 -9.29475 -8.88923 -8.29381 -6.24394 1.38751 1.43699 1.56594 1.82512 2.28020 2.71523 2.76914 3.12670 3.63739 4.08499 4.24000 4.29239 4.37657 4.50553 4.54655 4.59388 4.61859 4.71973 4.73265 4.75460 4.81056 4.98655 5.05295 5.15891 5.21363 5.29794 5.54332 5.76429 6.06944 6.18993 6.21723 6.34388 6.74213 7.05146 7.43985 8.35394 8.66231 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.007941 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.035678 B = 3525.277496 C = 4442.921390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.561 5.561 3 C 0.026 3.974 4 C 0.087 3.913 5 C -0.005 4.005 6 C -0.025 4.025 7 C -0.161 4.161 8 N -0.517 5.517 9 C 0.094 3.906 10 C 0.335 3.665 11 C -0.494 4.494 12 H 0.087 0.913 13 C 0.032 3.968 14 N -0.790 5.790 15 Si 0.991 3.009 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.259 1.259 19 N -0.547 5.547 20 H 0.023 0.977 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.014 0.986 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.171 0.829 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 2.153 -0.370 7.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.285 5.285 3 C -0.122 4.122 4 C -0.042 4.042 5 C -0.043 4.043 6 C -0.158 4.158 7 C -0.292 4.292 8 N -0.206 5.206 9 C -0.049 4.049 10 C 0.089 3.911 11 C -0.534 4.534 12 H 0.105 0.895 13 C -0.187 4.187 14 N -0.416 5.416 15 Si 0.811 3.189 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.183 1.183 19 N -0.270 5.270 20 H 0.042 0.958 21 H 0.105 0.895 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.188 0.812 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.707 2.404 -1.229 7.230 hybrid contribution -0.180 -0.228 1.498 1.525 sum -6.888 2.176 0.268 7.228 Atomic orbital electron populations 1.22496 0.86235 1.02953 1.00908 1.62026 1.09293 1.14351 1.42847 1.22396 1.00559 0.88256 1.00988 1.21701 0.98852 0.93572 0.90053 1.19553 0.99291 0.92049 0.93442 1.21208 0.91987 1.02323 1.00320 1.22214 0.96462 1.10676 0.99801 1.45619 1.08297 1.39955 1.26778 1.21727 1.02128 0.92198 0.88864 1.20625 0.85240 0.92230 0.92961 1.18475 0.90512 1.29511 1.14853 0.89495 1.26711 1.03353 0.93219 0.95375 1.70153 1.28233 1.21486 1.21708 0.85150 0.75717 0.79296 0.78690 1.18353 1.19906 1.18342 1.71050 1.17010 1.24676 1.14222 0.95847 0.89537 0.90862 0.92415 0.89113 0.95922 0.93374 0.96764 0.89913 0.92741 0.81215 0.91831 0.90803 0.89135 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.32 127.69 1.19 1.74 16 2 N -0.56 -18.18 5.02 -948.84 -4.76 -22.94 16 3 C 0.03 0.72 9.57 127.69 1.22 1.94 16 4 C 0.09 3.50 4.92 86.30 0.42 3.92 16 5 C 0.00 -0.19 5.70 29.84 0.17 -0.02 16 6 C -0.03 -1.27 6.34 41.95 0.27 -1.01 16 7 C -0.16 -7.44 11.49 83.51 0.96 -6.48 16 8 N -0.52 -25.00 3.21 -544.21 -1.75 -26.75 16 9 C 0.09 3.32 10.96 127.77 1.40 4.72 16 10 C 0.33 19.31 7.43 133.59 0.99 20.30 16 11 C -0.49 -27.66 9.00 23.18 0.21 -27.45 16 12 H 0.09 4.43 7.16 -2.91 -0.02 4.41 16 13 C 0.03 1.75 5.50 85.35 0.47 2.22 16 14 N -0.79 -46.06 11.90 21.88 0.26 -45.80 16 15 Si 0.99 40.18 29.56 68.60 2.03 42.20 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 19 N -0.55 -32.69 9.38 -182.22 -1.71 -34.40 16 20 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 21 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 22 H 0.07 1.80 6.47 -2.39 -0.02 1.79 16 23 H 0.06 1.70 8.12 -2.38 -0.02 1.68 16 24 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 25 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 2.31 8.06 -2.38 -0.02 2.29 16 27 H 0.01 0.59 8.12 -2.39 -0.02 0.57 16 28 H 0.08 2.86 6.52 -2.38 -0.02 2.84 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.17 6.36 8.06 -2.91 -0.02 6.34 16 31 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.07 2.57 7.38 -2.39 -0.02 2.56 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.27 14.65 8.29 -92.71 -0.77 13.89 16 Total: -1.00 -70.81 285.75 2.44 -68.37 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.07 Total: 19.44 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 7.30 Total: -0.12 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -7.96 Total: -129.90 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -70.81 2.44 -68.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.535 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds