Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00211 * 2 1 4 4 H 1.48498 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46843 * 299.99706 * 3 2 1 6 6 H 1.48501 * 109.46987 * 59.99085 * 3 2 1 7 7 C 1.37873 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99968 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.57596 * 300.15751 * 9 7 2 11 11 C 1.53129 * 109.55411 * 60.29917 * 9 7 2 12 12 C 1.53036 * 109.30712 * 177.51919 * 11 9 7 13 13 N 1.46849 * 109.52274 * 300.83936 * 12 11 9 14 14 C 1.46842 * 111.20050 * 61.74759 * 13 12 11 15 15 H 1.09002 * 109.45412 * 58.25964 * 14 13 12 16 16 C 1.52999 * 109.46826 * 178.23871 * 14 13 12 17 17 C 1.54265 * 110.02917 * 57.21715 * 16 14 13 18 18 C 1.54885 * 104.19743 * 217.10582 * 17 16 14 19 19 C 1.54897 * 102.74660 * 37.94222 * 18 17 16 20 20 C 1.53881 * 110.02993 * 300.05295 * 16 14 13 21 21 C 1.53039 * 109.52266 * 298.25785 * 14 13 12 22 22 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46579 * 57.58277 * 11 9 7 24 24 H 1.08997 * 109.53656 * 297.49878 * 11 9 7 25 25 H 1.09001 * 109.45883 * 180.82826 * 12 11 9 26 26 H 1.09002 * 109.45657 * 60.85248 * 12 11 9 27 27 H 1.00903 * 110.99692 * 185.84337 * 13 12 11 28 28 H 1.09002 * 110.01603 * 178.65860 * 16 14 13 29 29 H 1.08999 * 110.48622 * 335.78712 * 17 16 14 30 30 H 1.09007 * 110.48389 * 98.42972 * 17 16 14 31 31 H 1.09002 * 110.76018 * 279.63485 * 18 17 16 32 32 H 1.08999 * 110.75941 * 156.25778 * 18 17 16 33 33 H 1.09002 * 110.48563 * 203.37577 * 19 18 17 34 34 H 1.09004 * 110.48057 * 80.73869 * 19 18 17 35 35 H 1.08998 * 110.03038 * 238.56353 * 20 16 14 36 36 H 1.08995 * 110.02871 * 359.97438 * 20 16 14 37 37 H 1.09002 * 109.50563 * 179.11883 * 21 14 13 38 38 H 1.09003 * 109.50107 * 299.19864 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6213 -2.5572 0.8883 11 6 0.3761 -2.5858 -1.2532 12 6 -0.3387 -3.9386 -1.2788 13 7 0.6557 -5.0192 -1.2784 14 6 1.4760 -4.9855 -0.0609 15 1 0.8312 -5.0719 0.8137 16 6 2.4666 -6.1513 -0.0811 17 6 3.3395 -6.0810 -1.3512 18 6 3.5273 -7.5616 -1.7655 19 6 2.1442 -8.1830 -1.4492 20 6 1.7066 -7.4878 -0.1435 21 6 2.2450 -3.6638 0.0012 22 1 -0.4850 0.8401 -0.0004 23 1 1.0019 -2.4879 -2.1403 24 1 -0.3624 -1.7842 -1.2384 25 1 -0.9510 -4.0089 -2.1779 26 1 -0.9747 -4.0300 -0.3983 27 1 0.2123 -5.9186 -1.3909 28 1 3.0966 -6.1210 0.8079 29 1 2.8257 -5.5272 -2.1369 30 1 4.3027 -5.6224 -1.1272 31 1 4.3082 -8.0335 -1.1691 32 1 3.7517 -7.6396 -2.8292 33 1 2.2350 -9.2585 -1.2969 34 1 1.4374 -7.9687 -2.2509 35 1 1.9684 -8.1066 0.7148 36 1 0.6320 -7.3058 -0.1589 37 1 2.8418 -3.6325 0.9128 38 1 2.9006 -3.5832 -0.8659 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259637321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -30.672034 kcal Electronic energy + Delta-G solvation = -16144.927692 eV Core-core repulsion = 13792.484498 eV Total energy + Delta-G solvation = -2352.443194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08027 -36.38024 -33.13352 -30.88048 -30.40419 -28.41915 -26.84380 -25.21846 -21.89081 -21.68519 -20.49551 -19.04930 -18.14718 -16.42177 -15.79155 -15.41093 -14.48198 -14.28285 -14.00100 -13.14688 -13.02061 -12.70422 -12.41074 -12.15796 -11.81753 -11.00195 -10.94950 -10.93919 -10.83893 -10.74653 -10.70667 -10.39357 -10.27212 -10.11813 -9.97361 -9.89784 -9.37454 -8.84772 -8.64892 -8.25365 -7.68052 -5.93436 -3.98512 3.32473 3.40439 3.44773 4.48041 4.74044 4.84346 4.99002 5.05435 5.36812 5.55594 5.67728 5.68935 5.84474 5.93741 5.95950 5.99701 6.04715 6.11278 6.21033 6.30910 6.33158 6.42041 6.48404 6.62097 6.67102 6.72969 6.86481 6.96676 7.18162 7.24795 7.55172 7.70627 7.86622 8.04415 8.15594 8.22597 8.53648 9.05716 9.65718 11.12737 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048063 B = 0.006934 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.433128 B = 4037.096380 C = 4338.735142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.018 0.982 11 C -0.104 4.104 12 C 0.058 3.942 13 N -0.679 5.679 14 C 0.096 3.904 15 H 0.025 0.975 16 C -0.087 4.087 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.098 4.098 22 H 0.258 0.742 23 H 0.041 0.959 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.016 0.984 27 H 0.322 0.678 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -13.211 -2.028 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.036 0.964 11 C -0.142 4.142 12 C -0.071 4.071 13 N -0.311 5.311 14 C -0.014 4.014 15 H 0.043 0.957 16 C -0.106 4.106 17 C -0.150 4.150 18 C -0.163 4.163 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.136 4.136 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.803 -12.716 -2.389 13.239 hybrid contribution -0.290 0.600 0.755 1.007 sum 2.514 -12.116 -1.633 12.482 Atomic orbital electron populations 1.69897 1.05869 1.26100 1.51349 1.24972 0.94826 0.98985 0.95296 0.86592 0.80203 0.84057 0.77475 1.19841 1.21090 1.21168 1.21256 0.92887 0.90705 1.49755 0.92770 1.18684 0.92756 0.91762 0.93907 0.96405 1.21636 1.00065 0.93245 0.99270 1.22089 0.92948 0.93851 0.98184 1.60378 1.25922 1.05881 1.38904 1.21540 0.93924 0.95743 0.90181 0.95687 1.21857 0.96565 0.93603 0.98530 1.22376 0.98946 0.95489 0.98219 1.22493 0.96630 0.96838 1.00300 1.22309 0.97345 0.98468 0.97603 1.22199 0.99820 0.96375 0.97437 1.21694 0.98600 0.93183 1.00116 0.93224 0.93982 0.89275 0.92839 0.96583 0.86017 0.91445 0.89193 0.92588 0.92428 0.92160 0.92670 0.91581 0.92578 0.92341 0.93709 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 11.38 55.43 0.63 -25.21 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 10 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 11 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 12 C 0.06 1.15 6.55 -3.83 -0.03 1.12 16 13 N -0.68 -11.89 5.42 -106.76 -0.58 -12.46 16 14 C 0.10 1.71 2.08 -67.72 -0.14 1.57 16 15 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 16 C -0.09 -1.28 2.82 -89.50 -0.25 -1.53 16 17 C -0.11 -1.62 5.19 -25.07 -0.13 -1.75 16 18 C -0.13 -1.48 6.91 -24.74 -0.17 -1.65 16 19 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 20 C -0.12 -1.50 5.91 -25.61 -0.15 -1.66 16 21 C -0.10 -2.09 4.41 -26.65 -0.12 -2.21 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.09 2.39 6.18 -51.93 -0.32 2.06 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.32 4.92 6.96 -39.29 -0.27 4.65 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.47 6.96 -51.93 -0.36 1.10 16 30 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.74 6.48 -51.93 -0.34 0.40 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.28 7.25 -51.93 -0.38 0.90 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -28.05 285.24 -9.26 -37.31 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.71 Total: 1.66 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.88 Total: -22.16 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.05 Total: -37.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.05 -9.26 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259637321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.636 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds