Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00211 * 2 1 4 4 H 1.48498 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46843 * 299.99706 * 3 2 1 6 6 H 1.48501 * 109.46987 * 59.99085 * 3 2 1 7 7 C 1.37873 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99968 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.57596 * 300.15751 * 9 7 2 11 11 C 1.53129 * 109.55411 * 60.29917 * 9 7 2 12 12 C 1.53036 * 109.30712 * 177.51919 * 11 9 7 13 13 N 1.46849 * 109.52274 * 300.83936 * 12 11 9 14 14 C 1.46842 * 111.20050 * 61.74759 * 13 12 11 15 15 H 1.09002 * 109.45412 * 58.25964 * 14 13 12 16 16 C 1.52999 * 109.46826 * 178.23871 * 14 13 12 17 17 C 1.54265 * 110.02917 * 57.21715 * 16 14 13 18 18 C 1.54885 * 104.19743 * 217.10582 * 17 16 14 19 19 C 1.54897 * 102.74660 * 37.94222 * 18 17 16 20 20 C 1.53881 * 110.02993 * 300.05295 * 16 14 13 21 21 C 1.53039 * 109.52266 * 298.25785 * 14 13 12 22 22 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46579 * 57.58277 * 11 9 7 24 24 H 1.08997 * 109.53656 * 297.49878 * 11 9 7 25 25 H 1.09001 * 109.45883 * 180.82826 * 12 11 9 26 26 H 1.09002 * 109.45657 * 60.85248 * 12 11 9 27 27 H 1.00903 * 110.99692 * 185.84337 * 13 12 11 28 28 H 1.09002 * 110.01603 * 178.65860 * 16 14 13 29 29 H 1.08999 * 110.48622 * 335.78712 * 17 16 14 30 30 H 1.09007 * 110.48389 * 98.42972 * 17 16 14 31 31 H 1.09002 * 110.76018 * 279.63485 * 18 17 16 32 32 H 1.08999 * 110.75941 * 156.25778 * 18 17 16 33 33 H 1.09002 * 110.48563 * 203.37577 * 19 18 17 34 34 H 1.09004 * 110.48057 * 80.73869 * 19 18 17 35 35 H 1.08998 * 110.03038 * 238.56353 * 20 16 14 36 36 H 1.08995 * 110.02871 * 359.97438 * 20 16 14 37 37 H 1.09002 * 109.50563 * 179.11883 * 21 14 13 38 38 H 1.09003 * 109.50107 * 299.19864 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6213 -2.5572 0.8883 11 6 0.3761 -2.5858 -1.2532 12 6 -0.3387 -3.9386 -1.2788 13 7 0.6557 -5.0192 -1.2784 14 6 1.4760 -4.9855 -0.0609 15 1 0.8312 -5.0719 0.8137 16 6 2.4666 -6.1513 -0.0811 17 6 3.3395 -6.0810 -1.3512 18 6 3.5273 -7.5616 -1.7655 19 6 2.1442 -8.1830 -1.4492 20 6 1.7066 -7.4878 -0.1435 21 6 2.2450 -3.6638 0.0012 22 1 -0.4850 0.8401 -0.0004 23 1 1.0019 -2.4879 -2.1403 24 1 -0.3624 -1.7842 -1.2384 25 1 -0.9510 -4.0089 -2.1779 26 1 -0.9747 -4.0300 -0.3983 27 1 0.2123 -5.9186 -1.3909 28 1 3.0966 -6.1210 0.8079 29 1 2.8257 -5.5272 -2.1369 30 1 4.3027 -5.6224 -1.1272 31 1 4.3082 -8.0335 -1.1691 32 1 3.7517 -7.6396 -2.8292 33 1 2.2350 -9.2585 -1.2969 34 1 1.4374 -7.9687 -2.2509 35 1 1.9684 -8.1066 0.7148 36 1 0.6320 -7.3058 -0.1589 37 1 2.8418 -3.6325 0.9128 38 1 2.9006 -3.5832 -0.8659 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259637321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -46.410928 kcal Electronic energy + Delta-G solvation = -16145.610182 eV Core-core repulsion = 13792.484498 eV Total energy + Delta-G solvation = -2353.125684 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46119 -37.82406 -35.07577 -32.47139 -32.19718 -29.46240 -28.24653 -27.20488 -23.54344 -23.36389 -21.57378 -20.48466 -19.73423 -18.34463 -17.39892 -16.64874 -16.40534 -15.53311 -15.40553 -14.70869 -14.61404 -14.32088 -13.99155 -13.87512 -13.18057 -12.87727 -12.72910 -12.57471 -12.29150 -12.04287 -11.92855 -11.83981 -11.74893 -11.45976 -11.38787 -11.30084 -11.25094 -10.66115 -10.61905 -10.37354 -9.19995 -8.09134 -6.22817 1.38473 1.40040 1.51817 2.42552 3.17236 3.35850 3.77440 3.89428 3.97350 4.35184 4.39402 4.42376 4.50982 4.62691 4.68933 4.80774 4.84413 4.91458 4.94496 5.00470 5.04674 5.10578 5.17399 5.21813 5.25070 5.34260 5.37481 5.52585 5.55592 5.59143 5.64447 5.74063 6.01634 6.03714 6.32636 6.40306 6.72947 6.89892 7.45016 8.95574 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048063 B = 0.006934 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.433128 B = 4037.096380 C = 4338.735142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.043 3.957 10 H -0.017 1.017 11 C -0.095 4.095 12 C 0.068 3.932 13 N -0.671 5.671 14 C 0.102 3.898 15 H 0.015 0.985 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.089 4.089 22 H 0.260 0.740 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.010 0.990 27 H 0.343 0.657 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.041 0.959 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -14.828 -2.489 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.025 3.975 10 H 0.001 0.999 11 C -0.134 4.134 12 C -0.062 4.062 13 N -0.305 5.305 14 C -0.008 4.008 15 H 0.033 0.967 16 C -0.102 4.102 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.127 4.127 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.028 0.972 27 H 0.163 0.837 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.422 -14.357 -2.853 15.032 hybrid contribution -0.481 1.136 0.919 1.538 sum 2.941 -13.221 -1.934 13.682 Atomic orbital electron populations 1.70031 1.07165 1.26984 1.51661 1.25755 0.95705 1.02390 0.94848 0.85574 0.79062 0.79770 0.77665 1.19272 1.20460 1.20569 1.21609 0.92893 0.92348 1.50203 0.93325 1.18671 0.93217 0.92703 0.92951 0.99876 1.21405 0.99039 0.95060 0.97864 1.21882 0.92934 0.92291 0.99047 1.60269 1.25312 1.06309 1.38567 1.21431 0.94215 0.95231 0.89924 0.96680 1.21822 0.96006 0.93495 0.98924 1.22331 0.98241 0.97322 0.97304 1.22466 0.97471 0.94693 1.01013 1.22303 0.96745 0.99510 0.96732 1.22178 0.99353 0.95057 0.98891 1.21533 0.97792 0.93754 0.99605 0.93083 0.95278 0.92339 0.90567 0.97183 0.83745 0.91273 0.91241 0.93182 0.91298 0.91357 0.90623 0.91573 0.91148 0.92412 0.94021 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 11.38 21.45 0.24 -54.26 16 2 C 0.01 0.64 5.31 84.65 0.45 1.09 16 3 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.53 -30.63 8.56 25.60 0.22 -30.41 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.04 2.26 2.16 -11.46 -0.02 2.24 16 10 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 11 C -0.10 -4.71 5.12 30.65 0.16 -4.55 16 12 C 0.07 2.66 6.55 86.32 0.57 3.22 16 13 N -0.67 -22.70 5.42 -491.68 -2.67 -25.36 16 14 C 0.10 3.59 2.08 44.94 0.09 3.68 16 15 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 16 C -0.08 -2.32 2.82 -10.07 -0.03 -2.35 16 17 C -0.11 -3.10 5.19 31.67 0.16 -2.93 16 18 C -0.12 -2.46 6.91 31.89 0.22 -2.24 16 19 C -0.12 -2.19 6.83 31.67 0.22 -1.98 16 20 C -0.12 -2.56 5.91 31.32 0.19 -2.38 16 21 C -0.09 -3.86 4.41 30.65 0.14 -3.73 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 3.24 6.18 -2.39 -0.01 3.23 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 27 H 0.34 9.63 6.96 -89.69 -0.62 9.01 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.18 6.96 -2.39 -0.02 2.16 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.28 6.48 -2.39 -0.02 1.27 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.31 7.25 -2.39 -0.02 2.29 16 Total: -1.00 -61.33 285.24 2.34 -58.98 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.39 Total: 14.10 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 2.35 Total: -40.33 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.42 Total: -79.62 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.33 2.34 -58.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259637321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.572 kcal (2) G-P(sol) polarization free energy of solvation -61.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds