Wall clock time and date at job start Mon Mar 30 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47313 * 264.81413 * 3 2 1 5 5 H 1.48505 * 109.46979 * 24.81338 * 3 2 1 6 6 H 1.48501 * 109.47156 * 144.80823 * 3 2 1 7 7 C 1.37877 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00361 * 354.30038 * 7 2 1 9 9 C 1.50705 * 120.00161 * 174.29895 * 7 2 1 10 10 H 1.09005 * 109.46607 * 4.50975 * 9 7 2 11 11 C 1.53008 * 109.47104 * 244.51323 * 9 7 2 12 12 C 1.52996 * 117.51555 * 356.65945 * 11 9 7 13 13 C 1.53000 * 117.49821 * 65.29132 * 11 9 7 14 14 N 1.46894 * 109.47197 * 124.51170 * 9 7 2 15 15 C 1.47992 * 111.00208 * 59.75585 * 14 9 7 16 16 C 1.50443 * 112.82935 * 191.34594 * 15 14 9 17 17 C 1.54308 * 108.50406 * 93.72693 * 16 15 14 18 18 C 1.45885 * 112.18409 * 281.46687 * 17 16 15 19 19 C 1.54307 * 112.18389 * 61.11669 * 18 17 16 20 20 C 1.48000 * 110.99902 * 291.03063 * 14 9 7 21 21 H 0.96994 * 120.00632 * 359.97438 * 1 2 3 22 22 H 1.08992 * 115.54748 * 210.96004 * 11 9 7 23 23 H 1.08998 * 117.49552 * 214.97093 * 12 11 9 24 24 H 1.09002 * 117.50568 * 359.97438 * 12 11 9 25 25 H 1.09002 * 117.49935 * 359.97033 * 13 11 9 26 26 H 1.08994 * 117.50251 * 145.00251 * 13 11 9 27 27 H 1.09000 * 108.81342 * 312.20684 * 15 14 9 28 28 H 1.09003 * 108.81213 * 70.48349 * 15 14 9 29 29 H 1.09000 * 109.62892 * 334.02158 * 16 15 14 30 30 H 1.09006 * 109.80071 * 213.52820 * 16 15 14 31 31 H 1.08994 * 108.94463 * 160.76790 * 17 16 15 32 32 H 1.09003 * 108.86562 * 42.11019 * 17 16 15 33 33 H 1.08995 * 108.93469 * 300.42045 * 18 17 16 34 34 H 1.08997 * 108.93451 * 181.81576 * 18 17 16 35 35 H 1.09001 * 109.63552 * 161.76217 * 19 18 17 36 36 H 1.09005 * 109.63678 * 41.16432 * 19 18 17 37 37 H 1.09000 * 108.81089 * 205.69884 * 20 14 9 38 38 H 1.08992 * 108.81371 * 324.09007 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8069 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1270 0.0938 9 6 3.5060 -1.1973 -0.1291 10 1 3.8726 -0.1708 -0.1313 11 6 3.9034 -1.8836 -1.4376 12 6 2.7831 -2.4820 -2.2906 13 6 3.4915 -1.2043 -2.7451 14 7 4.0937 -1.9249 1.0036 15 6 3.6129 -3.3240 1.0423 16 6 3.9662 -4.0274 2.3243 17 6 2.7812 -3.8869 3.3027 18 6 2.7449 -2.5746 3.9390 19 6 2.5788 -1.4340 2.9130 20 6 3.9126 -1.1752 2.2668 21 1 -0.4851 0.8399 0.0004 22 1 4.8589 -2.4079 -1.4221 23 1 3.0015 -3.3999 -2.8363 24 1 1.7625 -2.3872 -1.9196 25 1 2.9370 -0.2686 -2.6732 26 1 4.1759 -1.2816 -3.5899 27 1 2.5290 -3.3265 0.9272 28 1 4.0539 -3.8704 0.2085 29 1 4.8559 -3.5716 2.7589 30 1 4.1547 -5.0827 2.1267 31 1 2.8667 -4.6519 4.0743 32 1 1.8515 -4.0401 2.7545 33 1 3.6731 -2.4227 4.4897 34 1 1.9106 -2.5443 4.6398 35 1 2.2366 -0.5320 3.4203 36 1 1.8546 -1.7274 2.1530 37 1 4.7015 -1.4624 2.9621 38 1 3.9994 -0.1090 2.0583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259649477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:38 Heat of formation + Delta-G solvation = 23.841869 kcal Electronic energy + Delta-G solvation = -16853.933231 eV Core-core repulsion = 14503.853937 eV Total energy + Delta-G solvation = -2350.079294 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83869 -36.45761 -33.34504 -32.16373 -31.26149 -27.87536 -25.19614 -24.18917 -22.68705 -21.38732 -19.91483 -19.35830 -18.29420 -16.89236 -15.44524 -15.02973 -14.49005 -14.28492 -13.60959 -13.31054 -12.99205 -12.45807 -12.40632 -12.16096 -12.06742 -11.38960 -11.10745 -10.95524 -10.61310 -10.45864 -10.30321 -10.07976 -9.95299 -9.87694 -9.62425 -9.58425 -9.36437 -9.18704 -8.62917 -8.55186 -6.92144 -6.14318 -4.10948 3.23989 3.32750 3.34502 4.35703 4.79703 4.98340 5.25682 5.34179 5.37293 5.58545 5.85253 5.88377 6.02454 6.08128 6.12406 6.14309 6.23300 6.34881 6.44242 6.49225 6.54844 6.60105 6.67934 6.73129 6.80707 6.84415 6.94086 6.96692 6.97919 7.05898 7.21369 7.41042 7.52238 7.67725 8.25714 8.35892 8.50879 8.89063 9.50248 10.97697 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.013969 C = 0.010819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.449460 B = 2003.915100 C = 2587.477473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.864 3.136 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.199 3.801 10 H 0.047 0.953 11 C -0.131 4.131 12 C -0.169 4.169 13 C -0.187 4.187 14 N -0.545 5.545 15 C 0.066 3.934 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.155 4.155 20 C 0.079 3.921 21 H 0.263 0.737 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -4.310 2.970 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.092 3.908 10 H 0.065 0.935 11 C -0.150 4.150 12 C -0.206 4.206 13 C -0.224 4.224 14 N -0.270 5.270 15 C -0.062 4.062 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.194 4.194 20 C -0.049 4.049 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.646 -4.224 2.910 8.395 hybrid contribution -0.530 1.089 0.114 1.217 sum 6.116 -3.134 3.024 7.508 Atomic orbital electron populations 1.69902 1.06203 1.26919 1.50175 1.25007 0.94525 0.98537 0.94227 0.87103 0.80302 0.84383 0.78975 1.20129 1.21835 1.18726 1.21363 0.90528 0.94378 1.49875 0.90263 1.19315 0.93412 0.92650 0.85436 0.93538 1.22421 0.97151 1.02896 0.92523 1.23004 1.00246 0.94282 1.03065 1.22721 1.04187 0.98008 0.97520 1.62322 1.59541 1.01451 1.03666 1.21544 0.99889 0.89218 0.95537 1.21426 0.98170 0.99293 0.96659 1.20561 0.99161 0.97087 0.98465 1.20542 1.00308 0.95955 0.98312 1.22126 1.01073 0.96850 0.99304 1.21527 0.94951 0.97461 0.91001 0.92707 0.89908 0.91643 0.86636 0.89410 0.90910 0.93097 0.92803 0.91718 0.92563 0.93594 0.92182 0.93402 0.93500 0.93419 0.87138 0.93456 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 20.86 26.90 -169.99 -4.57 16.28 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.14 5.49 56.52 0.31 -5.82 16 7 C -0.52 -13.10 3.33 -34.44 -0.11 -13.21 16 8 H 0.08 2.20 5.98 -52.49 -0.31 1.88 16 9 C 0.20 4.48 2.03 -68.86 -0.14 4.34 16 10 H 0.05 1.12 4.33 -51.93 -0.23 0.90 16 11 C -0.13 -2.70 4.71 -90.62 -0.43 -3.12 16 12 C -0.17 -3.41 9.67 -26.73 -0.26 -3.67 16 13 C -0.19 -3.72 10.12 -26.73 -0.27 -3.99 16 14 N -0.55 -11.24 4.70 -229.31 -1.08 -12.32 16 15 C 0.07 1.24 4.41 -4.50 -0.02 1.22 16 16 C -0.12 -1.88 5.63 -27.32 -0.15 -2.04 16 17 C -0.12 -1.82 5.30 -29.41 -0.16 -1.98 16 18 C -0.11 -1.88 5.30 -29.41 -0.16 -2.03 16 19 C -0.16 -3.08 5.28 -27.32 -0.14 -3.22 16 20 C 0.08 1.57 5.06 -4.49 -0.02 1.55 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.08 1.62 8.08 -51.93 -0.42 1.20 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.12 2.68 6.20 -51.93 -0.32 2.35 16 25 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 1.09 4.45 -51.93 -0.23 0.86 16 28 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 29 H 0.06 1.04 7.08 -51.93 -0.37 0.67 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.03 7.51 -51.93 -0.39 0.64 16 33 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 2.58 4.59 -51.93 -0.24 2.34 16 37 H 0.05 0.86 6.59 -51.93 -0.34 0.52 16 38 H 0.05 1.16 6.33 -51.93 -0.33 0.83 16 LS Contribution 272.92 15.07 4.11 4.11 Total: -1.00 -26.28 272.92 -8.86 -35.14 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.14 Total: 5.78 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -1.96 Total: -24.12 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.30 Total: -37.20 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.57 Total: 16.28 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.28 -8.86 -35.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.986 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds