Wall clock time and date at job start Mon Mar 30 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47313 * 264.81413 * 3 2 1 5 5 H 1.48505 * 109.46979 * 24.81338 * 3 2 1 6 6 H 1.48501 * 109.47156 * 144.80823 * 3 2 1 7 7 C 1.37877 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00361 * 354.30038 * 7 2 1 9 9 C 1.50705 * 120.00161 * 174.29895 * 7 2 1 10 10 H 1.09005 * 109.46607 * 4.50975 * 9 7 2 11 11 C 1.53008 * 109.47104 * 244.51323 * 9 7 2 12 12 C 1.52996 * 117.51555 * 356.65945 * 11 9 7 13 13 C 1.53000 * 117.49821 * 65.29132 * 11 9 7 14 14 N 1.46894 * 109.47197 * 124.51170 * 9 7 2 15 15 C 1.47992 * 111.00208 * 59.75585 * 14 9 7 16 16 C 1.50443 * 112.82935 * 191.34594 * 15 14 9 17 17 C 1.54308 * 108.50406 * 93.72693 * 16 15 14 18 18 C 1.45885 * 112.18409 * 281.46687 * 17 16 15 19 19 C 1.54307 * 112.18389 * 61.11669 * 18 17 16 20 20 C 1.48000 * 110.99902 * 291.03063 * 14 9 7 21 21 H 0.96994 * 120.00632 * 359.97438 * 1 2 3 22 22 H 1.08992 * 115.54748 * 210.96004 * 11 9 7 23 23 H 1.08998 * 117.49552 * 214.97093 * 12 11 9 24 24 H 1.09002 * 117.50568 * 359.97438 * 12 11 9 25 25 H 1.09002 * 117.49935 * 359.97033 * 13 11 9 26 26 H 1.08994 * 117.50251 * 145.00251 * 13 11 9 27 27 H 1.09000 * 108.81342 * 312.20684 * 15 14 9 28 28 H 1.09003 * 108.81213 * 70.48349 * 15 14 9 29 29 H 1.09000 * 109.62892 * 334.02158 * 16 15 14 30 30 H 1.09006 * 109.80071 * 213.52820 * 16 15 14 31 31 H 1.08994 * 108.94463 * 160.76790 * 17 16 15 32 32 H 1.09003 * 108.86562 * 42.11019 * 17 16 15 33 33 H 1.08995 * 108.93469 * 300.42045 * 18 17 16 34 34 H 1.08997 * 108.93451 * 181.81576 * 18 17 16 35 35 H 1.09001 * 109.63552 * 161.76217 * 19 18 17 36 36 H 1.09005 * 109.63678 * 41.16432 * 19 18 17 37 37 H 1.09000 * 108.81089 * 205.69884 * 20 14 9 38 38 H 1.08992 * 108.81371 * 324.09007 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8069 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1270 0.0938 9 6 3.5060 -1.1973 -0.1291 10 1 3.8726 -0.1708 -0.1313 11 6 3.9034 -1.8836 -1.4376 12 6 2.7831 -2.4820 -2.2906 13 6 3.4915 -1.2043 -2.7451 14 7 4.0937 -1.9249 1.0036 15 6 3.6129 -3.3240 1.0423 16 6 3.9662 -4.0274 2.3243 17 6 2.7812 -3.8869 3.3027 18 6 2.7449 -2.5746 3.9390 19 6 2.5788 -1.4340 2.9130 20 6 3.9126 -1.1752 2.2668 21 1 -0.4851 0.8399 0.0004 22 1 4.8589 -2.4079 -1.4221 23 1 3.0015 -3.3999 -2.8363 24 1 1.7625 -2.3872 -1.9196 25 1 2.9370 -0.2686 -2.6732 26 1 4.1759 -1.2816 -3.5899 27 1 2.5290 -3.3265 0.9272 28 1 4.0539 -3.8704 0.2085 29 1 4.8559 -3.5716 2.7589 30 1 4.1547 -5.0827 2.1267 31 1 2.8667 -4.6519 4.0743 32 1 1.8515 -4.0401 2.7545 33 1 3.6731 -2.4227 4.4897 34 1 1.9106 -2.5443 4.6398 35 1 2.2366 -0.5320 3.4203 36 1 1.8546 -1.7274 2.1530 37 1 4.7015 -1.4624 2.9621 38 1 3.9994 -0.1090 2.0583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259649477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:38 Heat of formation + Delta-G solvation = 8.417208 kcal Electronic energy + Delta-G solvation = -16854.602095 eV Core-core repulsion = 14503.853937 eV Total energy + Delta-G solvation = -2350.748158 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43969 -38.05360 -34.98351 -34.10837 -32.76610 -29.64515 -26.95543 -25.70478 -24.41728 -23.02276 -21.37110 -20.94880 -20.03803 -18.81124 -17.06388 -16.64039 -16.18662 -15.93892 -15.31348 -15.05139 -14.52367 -14.14412 -13.99223 -13.80432 -13.71513 -13.02101 -12.85539 -12.72357 -12.17764 -12.14064 -12.01743 -11.72376 -11.55476 -11.36848 -11.33390 -11.21374 -10.91862 -10.88006 -10.57454 -10.34780 -8.66477 -8.24397 -6.20123 1.27924 1.32269 1.37759 2.32945 3.06449 3.18507 3.47240 3.96624 4.01097 4.19065 4.29186 4.37488 4.45604 4.49750 4.59211 4.66886 4.84096 4.87108 4.91493 4.94448 4.97859 5.06229 5.14625 5.27673 5.29646 5.32230 5.36183 5.40319 5.49139 5.53276 5.57000 5.66453 5.76489 5.86647 6.32459 6.56222 6.72341 6.83024 7.42362 8.91288 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.013969 C = 0.010819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.449460 B = 2003.915100 C = 2587.477473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.031 3.969 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.488 4.488 8 H 0.044 0.956 9 C 0.197 3.803 10 H 0.035 0.965 11 C -0.134 4.134 12 C -0.167 4.167 13 C -0.180 4.180 14 N -0.542 5.542 15 C 0.070 3.930 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.153 4.153 20 C 0.077 3.923 21 H 0.260 0.740 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 -5.384 3.463 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.167 4.167 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.173 1.173 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.089 3.911 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.204 4.204 13 C -0.217 4.217 14 N -0.266 5.266 15 C -0.057 4.057 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.192 4.192 20 C -0.050 4.050 21 H 0.069 0.931 22 H 0.123 0.877 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.343 -5.307 3.408 11.272 hybrid contribution -1.376 1.334 -0.033 1.916 sum 7.967 -3.973 3.374 9.521 Atomic orbital electron populations 1.70029 1.07768 1.27223 1.53377 1.25567 0.94890 1.01298 0.94926 0.86372 0.79618 0.81225 0.79250 1.19606 1.22464 1.17347 1.21359 0.91904 0.92497 1.46926 0.93818 1.19277 0.91302 0.92913 0.87578 0.94695 1.22372 0.98032 1.03324 0.91573 1.22860 0.98068 0.96031 1.03446 1.22773 1.04125 0.96489 0.98323 1.62368 1.58791 1.02111 1.03293 1.21568 0.97755 0.88528 0.97855 1.21403 0.98258 1.00422 0.94773 1.20544 0.98087 0.97527 0.99012 1.20495 1.01759 0.94803 0.97447 1.22002 0.99958 0.97995 0.99238 1.21602 0.95714 0.96446 0.91281 0.93130 0.87729 0.88549 0.90547 0.91957 0.87275 0.96410 0.92228 0.90830 0.90034 0.90476 0.94512 0.91115 0.92824 0.94260 0.91224 0.90619 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 2 C 0.03 1.73 5.47 84.66 0.46 2.19 16 3 Si 0.91 43.76 26.90 68.60 1.85 45.60 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -11.36 5.49 99.48 0.55 -10.81 16 7 C -0.49 -25.29 3.33 25.60 0.09 -25.20 16 8 H 0.04 2.57 5.98 -2.91 -0.02 2.56 16 9 C 0.20 8.80 2.03 44.17 0.09 8.89 16 10 H 0.04 1.66 4.33 -2.38 -0.01 1.65 16 11 C -0.13 -5.30 4.71 -10.79 -0.05 -5.35 16 12 C -0.17 -6.60 9.67 30.59 0.30 -6.31 16 13 C -0.18 -6.84 10.12 30.60 0.31 -6.53 16 14 N -0.54 -21.59 4.70 -879.40 -4.13 -25.72 16 15 C 0.07 2.57 4.41 85.27 0.38 2.95 16 16 C -0.11 -3.20 5.63 30.21 0.17 -3.03 16 17 C -0.11 -3.34 5.30 28.86 0.15 -3.18 16 18 C -0.11 -3.32 5.30 28.86 0.15 -3.17 16 19 C -0.15 -6.06 5.28 30.21 0.16 -5.90 16 20 C 0.08 2.99 5.06 85.27 0.43 3.42 16 21 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 22 H 0.10 3.74 8.08 -2.39 -0.02 3.72 16 23 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 24 H 0.08 3.65 6.20 -2.39 -0.01 3.64 16 25 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 27 H 0.02 0.77 4.45 -2.39 -0.01 0.76 16 28 H 0.06 2.09 7.43 -2.39 -0.02 2.08 16 29 H 0.07 2.04 7.08 -2.39 -0.02 2.02 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.24 7.51 -2.39 -0.02 1.22 16 33 H 0.07 1.89 7.52 -2.39 -0.02 1.88 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 3.36 4.59 -2.38 -0.01 3.35 16 37 H 0.08 2.50 6.59 -2.39 -0.02 2.49 16 38 H 0.04 1.49 6.33 -2.39 -0.02 1.48 16 Total: -1.00 -58.84 272.92 1.52 -57.32 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.87 Total: 20.55 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 2.63 Total: -41.23 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.83 Total: -82.24 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.85 Total: 45.60 kcal Total: -58.84 1.52 -57.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.740 kcal (2) G-P(sol) polarization free energy of solvation -58.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds