Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00362 * 2 1 4 4 H 1.48500 * 109.47464 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47170 * 300.00487 * 3 2 1 6 6 H 1.48500 * 109.46925 * 60.00107 * 3 2 1 7 7 C 1.37881 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00218 * 185.12639 * 7 2 1 9 9 C 1.50706 * 119.99837 * 5.12502 * 7 2 1 10 10 H 1.08992 * 109.46927 * 354.90435 * 9 7 2 11 11 C 1.52999 * 109.47063 * 114.90390 * 9 7 2 12 12 C 1.53001 * 117.49651 * 3.44472 * 11 9 7 13 13 C 1.52995 * 117.50190 * 294.78512 * 11 9 7 14 14 N 1.46903 * 109.47050 * 234.90702 * 9 7 2 15 15 C 1.47632 * 111.00080 * 59.99752 * 14 9 7 16 16 C 1.50823 * 108.08451 * 150.32220 * 15 14 9 17 17 C 1.53860 * 111.59374 * 95.00416 * 16 15 14 18 18 C 1.54167 * 112.00578 * 319.11140 * 17 16 15 19 19 C 1.50750 * 112.60779 * 318.45619 * 18 17 16 20 20 C 1.39775 * 110.99769 * 291.10257 * 14 9 7 21 21 H 0.97000 * 119.99756 * 359.97438 * 1 2 3 22 22 H 1.09000 * 115.54702 * 149.11019 * 11 9 7 23 23 H 1.09000 * 117.50145 * 0.02562 * 12 11 9 24 24 H 1.09005 * 117.49481 * 145.01813 * 12 11 9 25 25 H 1.08999 * 117.50121 * 214.98097 * 13 11 9 26 26 H 1.09004 * 117.49639 * 359.97438 * 13 11 9 27 27 H 1.08997 * 109.74801 * 269.98389 * 15 14 9 28 28 H 1.08997 * 109.74674 * 30.66617 * 15 14 9 29 29 H 1.09001 * 109.04740 * 215.62990 * 16 15 14 30 30 H 1.09000 * 109.04811 * 334.52861 * 16 15 14 31 31 H 1.08997 * 108.98445 * 198.44348 * 17 16 15 32 32 H 1.08995 * 108.87608 * 79.70416 * 17 16 15 33 33 H 1.08996 * 108.85524 * 197.65052 * 18 17 16 34 34 H 1.08998 * 108.85625 * 79.26415 * 18 17 16 35 35 H 1.08998 * 109.54613 * 333.15114 * 19 18 17 36 36 H 1.08998 * 109.54668 * 212.87758 * 19 18 17 37 37 H 1.09003 * 109.02184 * 309.72143 * 20 14 9 38 38 H 1.09006 * 109.02635 * 68.61598 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0830 9 6 1.2555 -2.4966 -0.1177 10 1 0.1833 -2.3018 -0.1005 11 6 1.6282 -3.1826 -1.4335 12 6 2.6925 -2.5109 -2.3036 13 6 1.2236 -2.4848 -2.7335 14 7 1.6127 -3.3698 1.0083 15 6 1.2667 -2.7391 2.2975 16 6 0.9497 -3.8345 3.2845 17 6 2.1786 -4.2053 4.1329 18 6 3.4700 -4.2461 3.2919 19 6 3.2655 -4.8953 1.9469 20 6 2.9376 -3.8032 0.9055 21 1 -0.4850 0.8401 0.0004 22 1 1.6045 -4.2723 -1.4186 23 1 3.1274 -1.5805 -1.9386 24 1 3.3686 -3.1588 -2.8616 25 1 0.9339 -3.1153 -3.5741 26 1 0.6914 -1.5371 -2.6514 27 1 2.1108 -2.1513 2.6582 28 1 0.3968 -2.0948 2.1705 29 1 0.1490 -3.4988 3.9435 30 1 0.6144 -4.7175 2.7405 31 1 2.0168 -5.1852 4.5820 32 1 2.2952 -3.4670 4.9261 33 1 4.2298 -4.8032 3.8401 34 1 3.8243 -3.2265 3.1407 35 1 2.4388 -5.6033 2.0056 36 1 4.1752 -5.4186 1.6524 37 1 3.1035 -4.2044 -0.0944 38 1 3.6025 -2.9536 1.0619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259649478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 19.499110 kcal Electronic energy + Delta-G solvation = -16565.947314 eV Core-core repulsion = 14215.679703 eV Total energy + Delta-G solvation = -2350.267610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.80112 -36.31148 -33.33435 -32.19143 -31.28304 -27.31276 -24.92093 -24.30511 -23.10161 -21.26201 -20.12746 -18.80647 -18.60716 -16.26751 -15.40763 -14.72499 -14.34593 -14.23152 -14.09341 -13.61962 -12.93490 -12.58542 -12.34295 -11.83076 -11.52713 -11.43622 -11.10833 -10.98782 -10.65452 -10.47622 -10.20762 -10.14585 -9.96131 -9.77441 -9.70224 -9.45762 -9.30137 -9.05412 -8.58968 -8.49388 -6.88177 -5.99702 -4.10609 3.23997 3.33704 3.37017 4.38237 4.94983 5.10431 5.27905 5.37910 5.42904 5.53151 5.83754 5.95947 5.96253 6.09957 6.18066 6.21430 6.25533 6.38632 6.41307 6.49067 6.60937 6.65740 6.69703 6.70681 6.76755 6.90479 6.98869 7.08360 7.16305 7.25646 7.37577 7.41615 7.73512 7.86078 8.29935 8.50419 8.88615 9.07189 9.54293 10.99260 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.011397 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.434436 B = 2456.101364 C = 3005.989368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.222 3.778 10 H 0.082 0.918 11 C -0.129 4.129 12 C -0.180 4.180 13 C -0.178 4.178 14 N -0.553 5.553 15 C 0.088 3.912 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.120 4.120 20 C 0.083 3.917 21 H 0.261 0.739 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -6.491 3.040 7.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.117 3.883 10 H 0.100 0.900 11 C -0.148 4.148 12 C -0.217 4.217 13 C -0.215 4.215 14 N -0.277 5.277 15 C -0.039 4.039 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.047 4.047 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.124 0.876 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 3.101 -6.767 3.023 8.034 hybrid contribution 1.070 1.723 0.001 2.028 sum 4.171 -5.044 3.024 7.210 Atomic orbital electron populations 1.69890 1.05776 1.26535 1.50306 1.24925 0.94699 0.98854 0.94339 0.86754 0.80423 0.84507 0.77661 1.19847 1.20926 1.21083 1.21536 0.93482 0.91482 1.50232 0.92892 1.19167 0.98897 0.87305 0.82968 0.90002 1.22530 1.02411 0.96255 0.93649 1.22977 0.91192 1.03554 1.03989 1.22694 0.98493 1.02820 0.97536 1.59434 1.21151 1.43237 1.03853 1.21315 1.00493 0.93741 0.88356 1.21526 0.96136 1.00539 0.97445 1.21888 0.95364 0.99979 0.97810 1.21372 0.96847 1.00914 0.96272 1.21548 1.00356 0.98826 0.95110 1.20751 0.91086 0.95311 0.97569 0.92875 0.90411 0.87608 0.91946 0.91375 0.88660 0.95040 0.90801 0.93232 0.91385 0.93311 0.93189 0.93644 0.92350 0.91598 0.93065 0.92058 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 12.62 55.43 0.70 -23.71 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -13.51 4.88 -34.44 -0.17 -13.68 16 8 H 0.05 1.41 6.56 -52.49 -0.34 1.07 16 9 C 0.22 5.30 2.38 -68.86 -0.16 5.14 16 10 H 0.08 2.24 6.85 -51.93 -0.36 1.89 16 11 C -0.13 -2.79 4.16 -90.62 -0.38 -3.17 16 12 C -0.18 -3.71 9.67 -26.69 -0.26 -3.97 16 13 C -0.18 -3.71 10.12 -26.70 -0.27 -3.98 16 14 N -0.55 -11.83 3.99 -233.38 -0.93 -12.76 16 15 C 0.09 1.85 4.50 -4.51 -0.02 1.83 16 16 C -0.12 -2.03 5.41 -27.38 -0.15 -2.18 16 17 C -0.11 -1.70 5.91 -25.67 -0.15 -1.85 16 18 C -0.12 -1.81 5.31 -27.25 -0.14 -1.95 16 19 C -0.12 -1.96 5.65 -27.11 -0.15 -2.12 16 20 C 0.08 1.64 4.45 -6.75 -0.03 1.61 16 21 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 22 H 0.08 1.61 7.62 -51.93 -0.40 1.21 16 23 H 0.11 2.40 6.20 -51.93 -0.32 2.07 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.09 2.23 8.14 -51.93 -0.42 1.80 16 27 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 28 H 0.07 1.75 7.77 -51.93 -0.40 1.35 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.19 7.27 -51.93 -0.38 0.82 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.00 6.57 -51.93 -0.34 0.66 16 35 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.21 5.94 -51.93 -0.31 0.91 16 38 H 0.02 0.34 6.36 -51.93 -0.33 0.01 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -25.86 283.73 -9.37 -35.23 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.41 Total: 3.60 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.98 Total: -22.45 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.23 Total: -36.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.86 -9.37 -35.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.734 kcal (2) G-P(sol) polarization free energy of solvation -25.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds