Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00362 * 2 1 4 4 H 1.48500 * 109.47464 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47170 * 300.00487 * 3 2 1 6 6 H 1.48500 * 109.46925 * 60.00107 * 3 2 1 7 7 C 1.37881 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00218 * 185.12639 * 7 2 1 9 9 C 1.50706 * 119.99837 * 5.12502 * 7 2 1 10 10 H 1.08992 * 109.46927 * 354.90435 * 9 7 2 11 11 C 1.52999 * 109.47063 * 114.90390 * 9 7 2 12 12 C 1.53001 * 117.49651 * 3.44472 * 11 9 7 13 13 C 1.52995 * 117.50190 * 294.78512 * 11 9 7 14 14 N 1.46903 * 109.47050 * 234.90702 * 9 7 2 15 15 C 1.47632 * 111.00080 * 59.99752 * 14 9 7 16 16 C 1.50823 * 108.08451 * 150.32220 * 15 14 9 17 17 C 1.53860 * 111.59374 * 95.00416 * 16 15 14 18 18 C 1.54167 * 112.00578 * 319.11140 * 17 16 15 19 19 C 1.50750 * 112.60779 * 318.45619 * 18 17 16 20 20 C 1.39775 * 110.99769 * 291.10257 * 14 9 7 21 21 H 0.97000 * 119.99756 * 359.97438 * 1 2 3 22 22 H 1.09000 * 115.54702 * 149.11019 * 11 9 7 23 23 H 1.09000 * 117.50145 * 0.02562 * 12 11 9 24 24 H 1.09005 * 117.49481 * 145.01813 * 12 11 9 25 25 H 1.08999 * 117.50121 * 214.98097 * 13 11 9 26 26 H 1.09004 * 117.49639 * 359.97438 * 13 11 9 27 27 H 1.08997 * 109.74801 * 269.98389 * 15 14 9 28 28 H 1.08997 * 109.74674 * 30.66617 * 15 14 9 29 29 H 1.09001 * 109.04740 * 215.62990 * 16 15 14 30 30 H 1.09000 * 109.04811 * 334.52861 * 16 15 14 31 31 H 1.08997 * 108.98445 * 198.44348 * 17 16 15 32 32 H 1.08995 * 108.87608 * 79.70416 * 17 16 15 33 33 H 1.08996 * 108.85524 * 197.65052 * 18 17 16 34 34 H 1.08998 * 108.85625 * 79.26415 * 18 17 16 35 35 H 1.08998 * 109.54613 * 333.15114 * 19 18 17 36 36 H 1.08998 * 109.54668 * 212.87758 * 19 18 17 37 37 H 1.09003 * 109.02184 * 309.72143 * 20 14 9 38 38 H 1.09006 * 109.02635 * 68.61598 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0830 9 6 1.2555 -2.4966 -0.1177 10 1 0.1833 -2.3018 -0.1005 11 6 1.6282 -3.1826 -1.4335 12 6 2.6925 -2.5109 -2.3036 13 6 1.2236 -2.4848 -2.7335 14 7 1.6127 -3.3698 1.0083 15 6 1.2667 -2.7391 2.2975 16 6 0.9497 -3.8345 3.2845 17 6 2.1786 -4.2053 4.1329 18 6 3.4700 -4.2461 3.2919 19 6 3.2655 -4.8953 1.9469 20 6 2.9376 -3.8032 0.9055 21 1 -0.4850 0.8401 0.0004 22 1 1.6045 -4.2723 -1.4186 23 1 3.1274 -1.5805 -1.9386 24 1 3.3686 -3.1588 -2.8616 25 1 0.9339 -3.1153 -3.5741 26 1 0.6914 -1.5371 -2.6514 27 1 2.1108 -2.1513 2.6582 28 1 0.3968 -2.0948 2.1705 29 1 0.1490 -3.4988 3.9435 30 1 0.6144 -4.7175 2.7405 31 1 2.0168 -5.1852 4.5820 32 1 2.2952 -3.4670 4.9261 33 1 4.2298 -4.8032 3.8401 34 1 3.8243 -3.2265 3.1407 35 1 2.4388 -5.6033 2.0056 36 1 4.1752 -5.4186 1.6524 37 1 3.1035 -4.2044 -0.0944 38 1 3.6025 -2.9536 1.0619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259649478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 5.992278 kcal Electronic energy + Delta-G solvation = -16566.533014 eV Core-core repulsion = 14215.679703 eV Total energy + Delta-G solvation = -2350.853310 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45250 -37.93090 -34.99664 -34.08441 -32.76932 -29.10630 -26.69663 -25.81987 -24.79200 -22.95673 -21.70398 -20.62187 -20.02209 -18.17981 -17.15227 -16.60693 -15.96071 -15.74501 -15.57847 -15.19517 -14.72007 -14.18443 -13.96651 -13.52372 -13.28922 -12.96629 -12.88669 -12.62454 -12.46001 -12.13210 -11.88620 -11.77819 -11.44529 -11.41578 -11.20629 -11.04533 -10.95335 -10.79709 -10.59584 -10.30672 -8.73534 -8.01443 -6.19913 1.30969 1.35934 1.43916 2.38165 3.11720 3.28248 3.58000 4.07164 4.07977 4.19332 4.33553 4.45053 4.49199 4.52650 4.57617 4.67091 4.87032 4.95838 4.97008 4.98505 5.01698 5.08322 5.18129 5.31110 5.35509 5.38154 5.41939 5.48766 5.56561 5.61994 5.64648 5.69935 5.70378 5.85599 6.32674 6.61276 7.03383 7.17641 7.46537 8.93333 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.011397 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.434436 B = 2456.101364 C = 3005.989368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.031 3.969 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.040 0.960 9 C 0.223 3.777 10 H 0.041 0.959 11 C -0.138 4.138 12 C -0.167 4.167 13 C -0.174 4.174 14 N -0.549 5.549 15 C 0.096 3.904 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.111 4.111 20 C 0.084 3.916 21 H 0.260 0.740 22 H 0.095 0.905 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.062 0.938 38 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -8.271 3.375 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.117 3.883 10 H 0.059 0.941 11 C -0.157 4.157 12 C -0.204 4.204 13 C -0.212 4.212 14 N -0.272 5.272 15 C -0.032 4.032 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.046 4.046 21 H 0.069 0.931 22 H 0.113 0.887 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 4.415 -8.552 3.364 10.195 hybrid contribution 0.668 2.265 -0.109 2.364 sum 5.083 -6.287 3.255 8.716 Atomic orbital electron populations 1.70007 1.06863 1.26906 1.51800 1.25495 0.95292 1.01459 0.94641 0.85946 0.79354 0.81504 0.77533 1.19660 1.20651 1.21031 1.21593 0.92699 0.92501 1.49122 0.94155 1.18961 0.96282 0.87707 0.85349 0.94119 1.22430 1.03720 0.96932 0.92620 1.22912 0.91341 1.02766 1.03388 1.22667 0.98485 1.01785 0.98221 1.59474 1.22343 1.42197 1.03189 1.21227 0.98027 0.94620 0.89288 1.21427 0.97873 0.98791 0.96868 1.21864 0.93762 1.01625 0.97361 1.21373 0.97841 0.99887 0.96340 1.21484 1.01605 0.97530 0.94258 1.20810 0.89148 0.95523 0.99115 0.93063 0.88739 0.90118 0.88557 0.88076 0.91927 0.96790 0.94649 0.92240 0.91381 0.90592 0.92567 0.90758 0.94724 0.91077 0.90680 0.91961 0.99357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.51 12.62 21.45 0.27 -52.24 16 2 C 0.03 1.70 5.45 84.66 0.46 2.16 16 3 Si 0.93 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.52 -27.46 4.88 25.60 0.12 -27.33 16 8 H 0.04 2.21 6.56 -2.91 -0.02 2.19 16 9 C 0.22 10.97 2.38 44.17 0.10 11.07 16 10 H 0.04 2.34 6.85 -2.39 -0.02 2.33 16 11 C -0.14 -5.89 4.16 -10.80 -0.04 -5.94 16 12 C -0.17 -6.68 9.67 30.62 0.30 -6.38 16 13 C -0.17 -7.14 10.12 30.62 0.31 -6.83 16 14 N -0.55 -23.70 3.99 -892.27 -3.56 -27.26 16 15 C 0.10 4.12 4.50 85.46 0.38 4.50 16 16 C -0.11 -3.70 5.41 30.18 0.16 -3.54 16 17 C -0.11 -2.97 5.91 31.28 0.18 -2.78 16 18 C -0.12 -3.32 5.31 30.26 0.16 -3.16 16 19 C -0.11 -3.31 5.65 30.35 0.17 -3.14 16 20 C 0.08 3.24 4.45 88.07 0.39 3.64 16 21 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 22 H 0.09 3.73 7.62 -2.39 -0.02 3.71 16 23 H 0.08 3.65 6.20 -2.39 -0.01 3.64 16 24 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 25 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 26 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.01 0.63 6.66 -2.39 -0.02 0.61 16 28 H 0.03 1.76 7.77 -2.39 -0.02 1.74 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.27 7.27 -2.39 -0.02 2.25 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.03 1.14 6.57 -2.39 -0.02 1.13 16 35 H 0.07 2.09 7.11 -2.39 -0.02 2.07 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.37 5.94 -2.39 -0.01 2.36 16 38 H -0.01 -0.51 6.36 -2.38 -0.02 -0.53 16 Total: -1.00 -57.48 283.73 2.46 -55.02 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.01 Total: 16.39 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 2.71 Total: -37.73 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -3.29 Total: -79.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -57.48 2.46 -55.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.013 kcal (2) G-P(sol) polarization free energy of solvation -57.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds