Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27678 * 59.29444 * 9 7 2 11 11 C 1.54597 * 110.30463 * 297.20442 * 9 7 2 12 12 C 1.55103 * 102.84580 * 219.18773 * 11 9 7 13 13 N 1.48535 * 103.28338 * 37.30378 * 12 11 9 14 14 C 1.46904 * 111.00151 * 200.33129 * 13 12 11 15 15 C 1.52995 * 109.47391 * 287.40290 * 14 13 12 16 16 C 1.54270 * 110.02988 * 292.16585 * 15 14 13 17 17 C 1.54894 * 104.19461 * 217.10573 * 16 15 14 18 18 C 1.54889 * 102.74959 * 37.94208 * 17 16 15 19 19 C 1.53873 * 110.03552 * 174.99821 * 15 14 13 20 20 C 1.47897 * 105.82384 * 320.84741 * 13 12 11 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.08991 * 110.72630 * 337.48304 * 11 9 7 23 23 H 1.08999 * 110.72368 * 100.77450 * 11 9 7 24 24 H 1.09008 * 110.59600 * 278.87567 * 12 11 9 25 25 H 1.08996 * 110.83552 * 155.85164 * 12 11 9 26 26 H 1.09006 * 109.46809 * 47.40026 * 14 13 12 27 27 H 1.08997 * 109.47080 * 167.39593 * 14 13 12 28 28 H 1.09002 * 110.01924 * 53.60710 * 15 14 13 29 29 H 1.08992 * 110.48565 * 335.77950 * 16 15 14 30 30 H 1.08993 * 110.48606 * 98.42869 * 16 15 14 31 31 H 1.09004 * 110.75705 * 279.62599 * 17 16 15 32 32 H 1.08991 * 110.75850 * 156.25904 * 17 16 15 33 33 H 1.08999 * 110.48433 * 203.38504 * 18 17 16 34 34 H 1.08993 * 110.48604 * 80.73423 * 18 17 16 35 35 H 1.09000 * 110.03306 * 238.57114 * 19 15 14 36 36 H 1.09007 * 110.03134 * 359.97438 * 19 15 14 37 37 H 1.08995 * 109.92062 * 265.97526 * 20 13 12 38 38 H 1.08999 * 110.08092 * 144.77211 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6104 -2.5654 -0.8788 11 6 0.4083 -2.6320 1.2898 12 6 0.5677 -4.1315 1.6529 13 7 1.9791 -4.4219 1.2922 14 6 2.1893 -5.8640 1.1075 15 6 2.1622 -6.5618 2.4687 16 6 3.3916 -6.1435 3.3015 17 6 3.7938 -7.4333 4.0592 18 6 3.5392 -8.5412 3.0072 19 6 2.2560 -8.0863 2.2816 20 6 2.2343 -3.6839 0.0361 21 1 -0.4850 -0.8401 -0.0004 22 1 0.8107 -1.9991 2.0806 23 1 -0.6363 -2.3899 1.0944 24 1 -0.1140 -4.7437 1.0623 25 1 0.4021 -4.2922 2.7181 26 1 1.3982 -6.2685 0.4760 27 1 3.1555 -6.0323 0.6320 28 1 1.2456 -6.3067 3.0006 29 1 4.2009 -5.8164 2.6490 30 1 3.1252 -5.3551 4.0053 31 1 3.1618 -7.5798 4.9351 32 1 4.8460 -7.4032 4.3415 33 1 3.3805 -9.5023 3.4962 34 1 4.3724 -8.6011 2.3071 35 1 1.3854 -8.5710 2.7234 36 1 2.3204 -8.3290 1.2209 37 1 2.0607 -4.3362 -0.8197 38 1 3.2601 -3.3158 0.0202 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -25.447014 kcal Electronic energy + Delta-G solvation = -15725.632258 eV Core-core repulsion = 13373.415638 eV Total energy + Delta-G solvation = -2352.216620 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88438 -37.29666 -33.51749 -31.03051 -28.65843 -28.36365 -28.02891 -24.20814 -23.37014 -20.76818 -20.28706 -19.72681 -19.06608 -16.85477 -16.01492 -15.22528 -14.59853 -14.54955 -13.70804 -13.67048 -13.26758 -13.01691 -12.58510 -11.96485 -11.70994 -11.41913 -11.10751 -11.01358 -10.89534 -10.84060 -10.67887 -10.52957 -10.50640 -10.24438 -10.16784 -10.04833 -9.73126 -9.52685 -8.41292 -8.30436 -7.73714 -6.27916 -3.99037 3.47575 3.49529 3.67871 4.46959 4.58321 4.72277 4.76602 4.90964 5.28108 5.43341 5.49349 5.57462 5.65241 5.68728 5.71755 5.77573 5.86186 5.92514 5.93107 6.02757 6.08128 6.13653 6.19385 6.21657 6.35883 6.44032 6.50249 6.60844 6.74893 6.90813 7.05138 7.31206 7.36508 7.76517 7.84114 8.29694 8.49261 8.94578 9.71860 11.10037 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052246 B = 0.005765 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.800491 B = 4855.634273 C = 5050.281861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 1.067 2.933 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.586 4.586 8 H 0.050 0.950 9 C 0.025 3.975 10 H 0.018 0.982 11 C -0.109 4.109 12 C 0.034 3.966 13 N -0.513 5.513 14 C 0.054 3.946 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.053 3.947 21 H 0.270 0.730 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -14.222 5.255 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.896 3.104 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.624 4.624 8 H 0.068 0.932 9 C 0.006 3.994 10 H 0.036 0.964 11 C -0.148 4.148 12 C -0.093 4.093 13 N -0.236 5.236 14 C -0.075 4.075 15 C -0.105 4.105 16 C -0.141 4.141 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.075 4.075 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.567 -12.407 5.647 14.377 hybrid contribution -0.400 -2.047 -0.709 2.203 sum 4.167 -14.454 4.937 15.832 Atomic orbital electron populations 1.70796 1.06849 1.30865 1.46672 1.25773 0.96565 1.02498 0.93772 0.83568 0.74891 0.75479 0.76481 1.20906 1.21575 1.21466 1.21994 0.93916 0.91153 1.55360 0.93204 1.19640 0.93043 0.93764 0.92990 0.96407 1.22708 0.99259 0.92296 1.00525 1.23300 0.88503 0.98291 0.99254 1.64683 1.21864 1.05860 1.31242 1.22389 1.00136 0.89367 0.95564 1.21726 0.99209 0.93365 0.96161 1.22248 0.97264 0.96375 0.98251 1.22555 1.00652 0.95598 0.97837 1.22337 0.97728 0.98078 0.97916 1.22202 0.97713 0.95657 1.00358 1.22927 1.01581 0.94923 0.88033 0.91802 0.91386 0.93024 0.95402 0.91715 0.95626 0.91519 0.91289 0.91443 0.91584 0.91938 0.91988 0.92238 0.91866 0.92185 0.92008 0.96434 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 13.43 55.43 0.74 -26.85 16 2 C 0.02 0.51 5.33 -17.82 -0.10 0.41 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.60 8.39 -34.44 -0.29 -16.89 16 8 H 0.05 1.41 7.34 -52.48 -0.39 1.03 16 9 C 0.02 0.63 2.55 -90.41 -0.23 0.40 16 10 H 0.02 0.49 8.00 -51.93 -0.42 0.07 16 11 C -0.11 -2.57 5.50 -24.78 -0.14 -2.71 16 12 C 0.03 0.67 5.92 -1.81 -0.01 0.66 16 13 N -0.51 -9.98 5.07 -230.34 -1.17 -11.15 16 14 C 0.05 0.86 3.76 -3.82 -0.01 0.85 16 15 C -0.09 -1.16 2.97 -89.50 -0.27 -1.43 16 16 C -0.10 -1.38 6.19 -25.07 -0.16 -1.54 16 17 C -0.13 -1.39 6.91 -24.74 -0.17 -1.56 16 18 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 19 C -0.12 -1.36 6.46 -25.61 -0.17 -1.53 16 20 C 0.05 1.16 6.31 -2.75 -0.02 1.14 16 21 H 0.27 8.05 5.57 -40.82 -0.23 7.83 16 22 H 0.07 1.75 7.86 -51.93 -0.41 1.34 16 23 H 0.05 1.23 7.03 -51.93 -0.36 0.86 16 24 H 0.03 0.52 7.81 -51.92 -0.41 0.12 16 25 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 26 H 0.03 0.41 7.83 -51.93 -0.41 0.00 16 27 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 28 H 0.07 0.99 7.17 -51.93 -0.37 0.61 16 29 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.68 7.67 -51.92 -0.40 0.28 16 37 H 0.02 0.36 7.77 -51.93 -0.40 -0.05 16 38 H 0.07 1.64 7.39 -51.93 -0.38 1.25 16 LS Contribution 290.50 15.07 4.38 4.38 Total: -1.00 -29.36 290.50 -9.57 -38.93 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.72 Total: -2.03 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -1.72 Total: -23.62 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.42 Total: -38.00 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.36 -9.57 -38.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds