Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47313 * 270.00004 * 3 2 1 5 5 H 1.48497 * 109.47159 * 30.00520 * 3 2 1 6 6 H 1.48505 * 109.46727 * 150.00452 * 3 2 1 7 7 C 1.37872 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00313 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.90007 * 297.58624 * 9 7 2 11 11 C 1.55138 * 110.98962 * 61.45641 * 9 7 2 12 12 C 1.54316 * 103.17520 * 153.83295 * 11 9 7 13 13 N 1.47441 * 107.23473 * 337.62478 * 12 11 9 14 14 C 1.46899 * 111.00231 * 236.74298 * 13 12 11 15 15 C 1.52996 * 109.47177 * 294.26085 * 14 13 12 16 16 C 1.54268 * 110.03446 * 293.47697 * 15 14 13 17 17 C 1.54884 * 104.19883 * 217.10770 * 16 15 14 18 18 C 1.54893 * 102.74836 * 37.94006 * 17 16 15 19 19 C 1.53879 * 110.03157 * 176.30961 * 15 14 13 20 20 C 1.47843 * 108.56653 * 359.01456 * 13 12 11 21 21 H 0.97008 * 120.00383 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.70445 * 35.36015 * 11 9 7 23 23 H 1.08998 * 110.70423 * 272.29882 * 11 9 7 24 24 H 1.08995 * 109.89311 * 97.03484 * 12 11 9 25 25 H 1.09010 * 109.88785 * 218.22321 * 12 11 9 26 26 H 1.09004 * 109.47097 * 54.26064 * 14 13 12 27 27 H 1.09001 * 109.47495 * 174.25725 * 14 13 12 28 28 H 1.09000 * 110.01906 * 54.92340 * 15 14 13 29 29 H 1.09002 * 110.48239 * 335.78616 * 16 15 14 30 30 H 1.09000 * 110.48132 * 98.42138 * 16 15 14 31 31 H 1.09009 * 110.75369 * 279.63092 * 17 16 15 32 32 H 1.08997 * 110.75671 * 156.25971 * 17 16 15 33 33 H 1.09006 * 110.48756 * 203.38028 * 18 17 16 34 34 H 1.08999 * 110.48466 * 80.73835 * 18 17 16 35 35 H 1.08996 * 110.03456 * 238.56549 * 19 15 14 36 36 H 1.08998 * 110.03141 * 0.02562 * 19 15 14 37 37 H 1.09002 * 110.37810 * 142.92415 * 20 13 12 38 38 H 1.09004 * 110.37217 * 265.26272 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6485 -2.6003 0.9022 11 6 0.3732 -2.6341 -1.2726 12 6 0.2487 -4.1615 -1.4537 13 7 1.3868 -4.7792 -0.7485 14 6 2.1770 -5.6190 -1.6586 15 6 1.3329 -6.8107 -2.1150 16 6 1.0392 -7.7394 -0.9187 17 6 1.1024 -9.1652 -1.5201 18 6 2.2707 -9.0581 -2.5315 19 6 2.1159 -7.6492 -3.1405 20 6 2.2172 -3.7050 -0.1635 21 1 -0.4851 0.8401 0.0004 22 1 0.8688 -2.1831 -2.1324 23 1 -0.6066 -2.1837 -1.1143 24 1 -0.6890 -4.5110 -1.0217 25 1 0.2881 -4.4138 -2.5134 26 1 2.4763 -5.0320 -2.5269 27 1 3.0654 -5.9802 -1.1405 28 1 0.3991 -6.4600 -2.5545 29 1 1.7981 -7.6174 -0.1458 30 1 0.0467 -7.5391 -0.5150 31 1 0.1710 -9.4108 -2.0305 32 1 1.3265 -9.9008 -0.7476 33 1 2.1768 -9.8204 -3.3050 34 1 3.2284 -9.1491 -2.0191 35 1 1.5616 -7.7062 -4.0773 36 1 3.0973 -7.2074 -3.3127 37 1 2.6068 -4.0124 0.8070 38 1 3.0345 -3.4476 -0.8372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -23.687807 kcal Electronic energy + Delta-G solvation = -15671.682320 eV Core-core repulsion = 13319.541985 eV Total energy + Delta-G solvation = -2352.140336 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83223 -37.10361 -33.16665 -31.09709 -28.64374 -28.23602 -28.11749 -24.62685 -23.24581 -20.64874 -20.15538 -19.60897 -18.76284 -16.51785 -15.72439 -15.09187 -14.79637 -14.55095 -14.10310 -13.45518 -13.23365 -12.50989 -12.41689 -12.19183 -11.69112 -11.14956 -11.06903 -11.01654 -10.94429 -10.86933 -10.72653 -10.65333 -10.51234 -10.36816 -10.09854 -9.97518 -9.56487 -9.17274 -8.80939 -8.37914 -7.52132 -6.01067 -4.04466 3.30408 3.37225 3.40479 4.42040 4.58078 4.76764 4.82542 4.99147 5.31895 5.37248 5.53546 5.64860 5.72259 5.74462 5.76547 5.88199 5.94930 5.97093 6.07193 6.12377 6.22814 6.24888 6.32470 6.39629 6.49655 6.54939 6.60291 6.67725 6.87832 7.18571 7.23077 7.67545 7.76986 7.83043 7.94159 8.04365 8.44668 8.97582 9.59745 11.08526 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067527 B = 0.005428 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.550689 B = 5157.499095 C = 5265.202265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.036 0.964 11 C -0.117 4.117 12 C 0.039 3.961 13 N -0.532 5.532 14 C 0.060 3.940 15 C -0.089 4.089 16 C -0.103 4.103 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.045 3.955 21 H 0.260 0.740 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -14.191 -4.719 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.054 0.946 11 C -0.156 4.156 12 C -0.088 4.088 13 N -0.256 5.256 14 C -0.068 4.068 15 C -0.108 4.108 16 C -0.141 4.141 17 C -0.167 4.167 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.082 4.082 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.864 -14.391 -4.323 15.141 hybrid contribution 0.747 1.514 -0.784 1.861 sum 2.612 -12.877 -5.107 14.097 Atomic orbital electron populations 1.69968 1.05893 1.26453 1.50359 1.24960 0.94835 0.99005 0.95001 0.86618 0.79920 0.83566 0.78036 1.20777 1.21210 1.19894 1.21051 0.92783 0.90397 1.51106 0.92656 1.19799 0.92135 0.91008 0.94013 0.94602 1.22678 1.02118 0.90990 0.99848 1.22896 0.94094 0.96585 0.95275 1.63583 1.09231 1.21391 1.31411 1.22319 0.95859 0.93983 0.94656 1.21804 0.98604 0.94996 0.95357 1.22240 1.02041 0.92572 0.97201 1.22557 0.98142 0.97787 0.98174 1.22340 0.98759 0.96673 0.98286 1.22199 1.00290 0.95230 0.98230 1.23238 0.96013 0.91462 0.97469 0.93059 0.93591 0.90946 0.92146 0.94646 0.95565 0.91666 0.91197 0.91423 0.91723 0.91976 0.92059 0.92288 0.91879 0.92211 0.91935 0.92244 0.94815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.12 55.43 0.67 -25.01 16 2 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.30 8.57 -34.44 -0.30 -14.59 16 8 H 0.06 1.52 7.79 -52.48 -0.41 1.11 16 9 C 0.05 1.26 2.98 -89.38 -0.27 1.00 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.81 5.63 -24.91 -0.14 -2.95 16 12 C 0.04 0.78 6.11 -2.84 -0.02 0.76 16 13 N -0.53 -10.27 4.98 -230.94 -1.15 -11.42 16 14 C 0.06 0.98 3.58 -3.83 -0.01 0.97 16 15 C -0.09 -1.22 2.84 -89.50 -0.25 -1.47 16 16 C -0.10 -1.34 6.16 -25.07 -0.15 -1.49 16 17 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 18 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 19 C -0.12 -1.40 6.46 -25.61 -0.17 -1.56 16 20 C 0.05 0.98 6.18 -2.04 -0.01 0.97 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.05 1.14 8.03 -51.93 -0.42 0.73 16 23 H 0.07 1.85 7.53 -51.93 -0.39 1.46 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.04 0.65 6.75 -51.92 -0.35 0.30 16 26 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 28 H 0.07 1.02 6.80 -51.93 -0.35 0.66 16 29 H 0.07 0.93 7.78 -51.93 -0.40 0.53 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.74 7.71 -51.93 -0.40 0.34 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -27.95 293.27 -9.73 -37.69 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.90 Total: -2.39 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.76 Total: -19.66 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.48 Total: -36.43 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.95 -9.73 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.002 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds