Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47313 * 270.00004 * 3 2 1 5 5 H 1.48497 * 109.47159 * 30.00520 * 3 2 1 6 6 H 1.48505 * 109.46727 * 150.00452 * 3 2 1 7 7 C 1.37872 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00313 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.90007 * 297.58624 * 9 7 2 11 11 C 1.55138 * 110.98962 * 61.45641 * 9 7 2 12 12 C 1.54316 * 103.17520 * 153.83295 * 11 9 7 13 13 N 1.47441 * 107.23473 * 337.62478 * 12 11 9 14 14 C 1.46899 * 111.00231 * 236.74298 * 13 12 11 15 15 C 1.52996 * 109.47177 * 294.26085 * 14 13 12 16 16 C 1.54268 * 110.03446 * 293.47697 * 15 14 13 17 17 C 1.54884 * 104.19883 * 217.10770 * 16 15 14 18 18 C 1.54893 * 102.74836 * 37.94006 * 17 16 15 19 19 C 1.53879 * 110.03157 * 176.30961 * 15 14 13 20 20 C 1.47843 * 108.56653 * 359.01456 * 13 12 11 21 21 H 0.97008 * 120.00383 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.70445 * 35.36015 * 11 9 7 23 23 H 1.08998 * 110.70423 * 272.29882 * 11 9 7 24 24 H 1.08995 * 109.89311 * 97.03484 * 12 11 9 25 25 H 1.09010 * 109.88785 * 218.22321 * 12 11 9 26 26 H 1.09004 * 109.47097 * 54.26064 * 14 13 12 27 27 H 1.09001 * 109.47495 * 174.25725 * 14 13 12 28 28 H 1.09000 * 110.01906 * 54.92340 * 15 14 13 29 29 H 1.09002 * 110.48239 * 335.78616 * 16 15 14 30 30 H 1.09000 * 110.48132 * 98.42138 * 16 15 14 31 31 H 1.09009 * 110.75369 * 279.63092 * 17 16 15 32 32 H 1.08997 * 110.75671 * 156.25971 * 17 16 15 33 33 H 1.09006 * 110.48756 * 203.38028 * 18 17 16 34 34 H 1.08999 * 110.48466 * 80.73835 * 18 17 16 35 35 H 1.08996 * 110.03456 * 238.56549 * 19 15 14 36 36 H 1.08998 * 110.03141 * 0.02562 * 19 15 14 37 37 H 1.09002 * 110.37810 * 142.92415 * 20 13 12 38 38 H 1.09004 * 110.37217 * 265.26272 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6485 -2.6003 0.9022 11 6 0.3732 -2.6341 -1.2726 12 6 0.2487 -4.1615 -1.4537 13 7 1.3868 -4.7792 -0.7485 14 6 2.1770 -5.6190 -1.6586 15 6 1.3329 -6.8107 -2.1150 16 6 1.0392 -7.7394 -0.9187 17 6 1.1024 -9.1652 -1.5201 18 6 2.2707 -9.0581 -2.5315 19 6 2.1159 -7.6492 -3.1405 20 6 2.2172 -3.7050 -0.1635 21 1 -0.4851 0.8401 0.0004 22 1 0.8688 -2.1831 -2.1324 23 1 -0.6066 -2.1837 -1.1143 24 1 -0.6890 -4.5110 -1.0217 25 1 0.2881 -4.4138 -2.5134 26 1 2.4763 -5.0320 -2.5269 27 1 3.0654 -5.9802 -1.1405 28 1 0.3991 -6.4600 -2.5545 29 1 1.7981 -7.6174 -0.1458 30 1 0.0467 -7.5391 -0.5150 31 1 0.1710 -9.4108 -2.0305 32 1 1.3265 -9.9008 -0.7476 33 1 2.1768 -9.8204 -3.3050 34 1 3.2284 -9.1491 -2.0191 35 1 1.5616 -7.7062 -4.0773 36 1 3.0973 -7.2074 -3.3127 37 1 2.6068 -4.0124 0.8070 38 1 3.0345 -3.4476 -0.8372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -39.082490 kcal Electronic energy + Delta-G solvation = -15672.349884 eV Core-core repulsion = 13319.541985 eV Total energy + Delta-G solvation = -2352.807899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20992 -38.44674 -35.10172 -32.74098 -29.99761 -29.80365 -29.37230 -26.48343 -24.74401 -21.86493 -21.59542 -21.22583 -20.04964 -18.49396 -17.01394 -16.78247 -16.40961 -15.81795 -15.63120 -14.83380 -14.29502 -14.16640 -14.06699 -13.86107 -13.27729 -13.03946 -12.74783 -12.66524 -12.29985 -12.20657 -11.90522 -11.82137 -11.77770 -11.54339 -11.45316 -11.38396 -11.23588 -11.02897 -10.88396 -10.50824 -9.12636 -8.15233 -6.26422 1.40256 1.40851 1.51579 2.41097 3.14321 3.20030 3.82374 3.82826 3.89101 4.12113 4.25331 4.41237 4.49413 4.56388 4.62853 4.68455 4.72879 4.76759 4.84868 4.91446 4.94327 4.99935 5.04266 5.14424 5.19590 5.23709 5.30249 5.34289 5.48520 5.54387 5.57639 5.61429 5.79856 5.90258 6.07287 6.35638 6.36606 6.82812 7.41681 8.93907 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067527 B = 0.005428 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.550689 B = 5157.499095 C = 5265.202265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.039 3.961 10 H 0.003 0.997 11 C -0.109 4.109 12 C 0.052 3.948 13 N -0.531 5.531 14 C 0.060 3.940 15 C -0.086 4.086 16 C -0.105 4.105 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.119 4.119 20 C 0.058 3.942 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -15.405 -5.563 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.021 0.979 11 C -0.148 4.148 12 C -0.076 4.076 13 N -0.255 5.255 14 C -0.068 4.068 15 C -0.105 4.105 16 C -0.142 4.142 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.069 4.069 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.801 -15.624 -5.171 16.694 hybrid contribution 0.442 1.884 -0.498 1.998 sum 3.244 -13.740 -5.670 15.213 Atomic orbital electron populations 1.70095 1.07316 1.27337 1.50941 1.25769 0.95684 1.02505 0.94525 0.85569 0.78769 0.79153 0.78254 1.20116 1.20787 1.19117 1.21392 0.92976 0.91743 1.51304 0.92756 1.19760 0.92880 0.92144 0.93238 0.97861 1.22474 1.00130 0.93798 0.98410 1.22762 0.94730 0.93468 0.96640 1.63595 1.09124 1.20375 1.32453 1.22436 0.96281 0.94199 0.93842 1.21786 0.98094 0.94368 0.96282 1.22220 1.01024 0.94219 0.96763 1.22532 0.98774 0.96276 0.98525 1.22339 0.98644 0.96178 0.98523 1.22185 1.00037 0.95583 0.97907 1.23011 0.95226 0.90680 0.98026 0.92979 0.95116 0.93405 0.91568 0.92674 0.96027 0.90871 0.91971 0.92343 0.92851 0.91352 0.90975 0.90578 0.91555 0.91296 0.91818 0.91732 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 12.12 21.44 0.26 -53.88 16 2 C 0.01 0.81 5.34 84.65 0.45 1.26 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -30.24 8.57 25.60 0.22 -30.02 16 8 H 0.05 3.00 7.79 -2.91 -0.02 2.97 16 9 C 0.04 2.04 2.98 -9.99 -0.03 2.01 16 10 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 11 C -0.11 -5.34 5.63 31.77 0.18 -5.16 16 12 C 0.05 2.04 6.11 86.65 0.53 2.57 16 13 N -0.53 -20.15 4.98 -884.55 -4.40 -24.55 16 14 C 0.06 1.87 3.58 86.30 0.31 2.18 16 15 C -0.09 -2.20 2.84 -10.07 -0.03 -2.23 16 16 C -0.10 -2.54 6.16 31.67 0.20 -2.34 16 17 C -0.12 -2.30 6.91 31.88 0.22 -2.08 16 18 C -0.12 -2.06 6.83 31.67 0.22 -1.84 16 19 C -0.12 -2.41 6.46 31.32 0.20 -2.21 16 20 C 0.06 2.53 6.18 86.94 0.54 3.06 16 21 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 22 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 23 H 0.05 2.53 7.53 -2.39 -0.02 2.51 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.05 1.96 6.75 -2.38 -0.02 1.94 16 26 H 0.02 0.69 8.08 -2.38 -0.02 0.68 16 27 H 0.07 2.15 8.01 -2.39 -0.02 2.13 16 28 H 0.06 1.69 6.80 -2.39 -0.02 1.67 16 29 H 0.06 1.52 7.78 -2.39 -0.02 1.50 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 37 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.03 1.39 7.71 -2.38 -0.02 1.37 16 Total: -1.00 -59.89 293.27 1.87 -58.01 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.99 Total: 9.16 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.00 Total: -34.81 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -4.14 Total: -78.43 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -59.89 1.87 -58.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.932 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds