Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47227 * 2 1 4 4 C 1.35491 * 126.98374 * 270.16329 * 3 2 1 5 5 C 1.50704 * 126.34789 * 359.97438 * 4 3 2 6 6 C 1.50695 * 109.47289 * 270.25710 * 5 4 3 7 7 H 1.07999 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99929 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99923 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47180 * 90.00481 * 10 8 6 12 12 H 1.48498 * 109.47265 * 210.00596 * 10 8 6 13 13 H 1.48495 * 109.47162 * 330.00382 * 10 8 6 14 14 N 1.30520 * 107.30813 * 180.22365 * 4 3 2 15 15 N 1.28591 * 109.67224 * 359.77126 * 14 4 3 16 16 C 1.30518 * 109.67461 * 359.97438 * 15 14 4 17 17 C 1.50706 * 126.34818 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47238 * 60.01963 * 17 16 15 19 19 C 1.52999 * 109.46573 * 300.01989 * 17 16 15 20 20 H 1.09004 * 109.46803 * 299.99751 * 1 2 3 21 21 H 1.08997 * 109.47177 * 59.99659 * 1 2 3 22 22 H 1.08994 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46803 * 240.00249 * 2 1 3 24 24 H 1.08997 * 109.47177 * 120.00341 * 2 1 3 25 25 H 1.09005 * 109.46755 * 30.24887 * 5 4 3 26 26 H 1.08990 * 109.47197 * 150.25148 * 5 4 3 27 27 H 0.97002 * 119.99873 * 179.97438 * 9 8 6 28 28 H 1.08996 * 109.46822 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46832 * 60.00314 * 18 17 16 31 31 H 1.09004 * 109.47261 * 300.00295 * 18 17 16 32 32 H 1.09002 * 109.46716 * 180.02562 * 19 17 16 33 33 H 1.09000 * 109.47486 * 299.99934 * 19 17 16 34 34 H 1.09001 * 109.47362 * 60.00657 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2872 2.1507 -1.0823 5 6 2.1398 1.7443 -2.5260 6 6 3.4282 1.1300 -3.0091 7 1 4.2699 1.0429 -2.3380 8 6 3.5329 0.6801 -4.3082 9 7 4.6572 0.1435 -4.7297 10 14 2.0773 0.8314 -5.4692 11 1 2.1429 2.1345 -6.1780 12 1 2.1177 -0.2738 -6.4602 13 1 0.8143 0.7535 -4.6922 14 7 2.7027 3.3074 -0.6429 15 7 2.7044 3.3067 0.6430 16 6 2.2896 2.1498 1.0824 17 6 2.1459 1.7419 2.5261 18 6 1.1552 2.6760 3.2238 19 6 3.5069 1.8321 3.2193 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3334 1.0166 -2.6181 26 1 1.9074 2.6223 -3.1286 27 1 4.7307 -0.1734 -5.6435 28 1 1.7783 0.7171 2.5792 29 1 1.0517 2.3812 4.2681 30 1 0.1857 2.6117 2.7299 31 1 1.5229 3.7008 3.1706 32 1 3.4031 1.5366 4.2633 33 1 4.2127 1.1666 2.7222 34 1 3.8745 2.8568 3.1662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = 52.686107 kcal Electronic energy + Delta-G solvation = -15588.210270 eV Core-core repulsion = 13135.841413 eV Total energy + Delta-G solvation = -2452.368857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.44605 -35.68214 -35.19708 -33.25439 -30.92757 -30.15316 -27.64160 -27.12949 -24.03144 -23.02146 -22.82417 -19.77899 -19.35750 -17.02523 -16.58411 -15.39983 -15.02349 -14.55355 -14.18812 -14.01704 -13.29193 -13.10118 -12.78342 -12.44523 -12.23051 -12.12324 -11.98383 -11.54285 -11.40019 -11.21052 -10.90913 -10.84505 -10.72318 -10.52802 -10.20248 -9.60064 -9.52641 -9.49019 -8.70026 -8.12676 -6.18690 -4.20428 2.52811 3.06868 3.22286 3.29088 3.30196 3.65966 4.30252 4.55209 4.81719 4.85636 5.07610 5.11884 5.18136 5.31126 5.33518 5.45744 5.64296 5.68701 5.74524 5.79311 5.87873 5.88610 6.03752 6.09804 6.26629 6.30078 6.62483 6.69183 6.94364 7.07569 7.44359 7.60865 8.34505 8.83959 9.38312 9.54757 10.93876 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038394 B = 0.007812 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.101718 B = 3583.539316 C = 3782.070489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.470 5.470 4 C 0.236 3.764 5 C 0.064 3.936 6 C -0.519 4.519 7 H 0.073 0.927 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.877 3.123 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.265 1.265 14 N -0.315 5.315 15 N -0.298 5.298 16 C 0.147 3.853 17 C 0.001 3.999 18 C -0.138 4.138 19 C -0.140 4.140 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.267 0.733 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.324 -2.490 12.960 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.162 5.162 4 C -0.031 4.031 5 C 0.025 3.975 6 C -0.558 4.558 7 H 0.092 0.908 8 C -0.127 4.127 9 N -0.530 5.530 10 Si 0.703 3.297 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.190 1.190 14 N -0.154 5.154 15 N -0.138 5.138 16 C -0.120 4.120 17 C -0.020 4.020 18 C -0.196 4.196 19 C -0.199 4.199 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.127 0.873 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.715 -1.148 12.788 15.518 hybrid contribution -1.011 -1.394 -0.814 1.905 sum -9.726 -2.542 11.975 15.635 Atomic orbital electron populations 1.22145 0.94438 1.02952 1.02943 1.21840 0.95202 0.79949 1.05318 1.46090 1.50070 1.13565 1.06438 1.25373 0.97368 0.87559 0.92833 1.18292 0.99188 0.97596 0.82459 1.20746 0.97162 1.40033 0.97866 0.90840 1.24918 0.95885 0.94310 0.97622 1.69887 1.25379 1.40185 1.17550 0.86823 0.83207 0.78442 0.81182 1.19685 1.20993 1.18978 1.74232 1.20326 1.18713 1.02127 1.74039 1.18125 1.17535 1.04073 1.24428 1.05727 0.90335 0.91526 1.19418 0.97658 0.99484 0.85470 1.21773 0.98189 1.00314 0.99336 1.21791 0.95325 1.03385 0.99354 0.92326 0.91609 0.90549 0.87278 0.89430 0.94689 0.93234 0.92318 0.90339 0.92029 0.92891 0.91342 0.92028 0.92625 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.10 1.45 6.26 -4.04 -0.03 1.43 16 3 N -0.47 -8.93 2.75 -110.65 -0.30 -9.23 16 4 C 0.24 5.43 7.22 -154.99 -1.12 4.31 16 5 C 0.06 1.54 4.21 -29.04 -0.12 1.42 16 6 C -0.52 -14.55 9.65 -34.44 -0.33 -14.88 16 7 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 8 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 10 Si 0.88 20.52 27.47 -169.99 -4.67 15.86 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 14 N -0.32 -7.78 12.21 32.80 0.40 -7.38 16 15 N -0.30 -6.57 12.21 32.80 0.40 -6.17 16 16 C 0.15 2.69 6.54 -154.98 -1.01 1.68 16 17 C 0.00 0.01 3.27 -91.77 -0.30 -0.29 16 18 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 19 C -0.14 -1.71 9.17 37.16 0.34 -1.37 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.11 1.74 7.82 -51.93 -0.41 1.33 16 24 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16 25 H 0.04 0.77 6.93 -51.93 -0.36 0.41 16 26 H 0.05 1.20 7.57 -51.93 -0.39 0.81 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.08 0.86 6.89 -51.93 -0.36 0.50 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -32.94 286.54 -6.31 -39.24 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.28 Total: -2.23 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.95 Total: -8.49 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 1.27 Total: -48.70 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.94 -6.31 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.931 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds