Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47227 * 2 1 4 4 C 1.35491 * 126.98374 * 270.16329 * 3 2 1 5 5 C 1.50704 * 126.34789 * 359.97438 * 4 3 2 6 6 C 1.50695 * 109.47289 * 270.25710 * 5 4 3 7 7 H 1.07999 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99929 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99923 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47180 * 90.00481 * 10 8 6 12 12 H 1.48498 * 109.47265 * 210.00596 * 10 8 6 13 13 H 1.48495 * 109.47162 * 330.00382 * 10 8 6 14 14 N 1.30520 * 107.30813 * 180.22365 * 4 3 2 15 15 N 1.28591 * 109.67224 * 359.77126 * 14 4 3 16 16 C 1.30518 * 109.67461 * 359.97438 * 15 14 4 17 17 C 1.50706 * 126.34818 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47238 * 60.01963 * 17 16 15 19 19 C 1.52999 * 109.46573 * 300.01989 * 17 16 15 20 20 H 1.09004 * 109.46803 * 299.99751 * 1 2 3 21 21 H 1.08997 * 109.47177 * 59.99659 * 1 2 3 22 22 H 1.08994 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46803 * 240.00249 * 2 1 3 24 24 H 1.08997 * 109.47177 * 120.00341 * 2 1 3 25 25 H 1.09005 * 109.46755 * 30.24887 * 5 4 3 26 26 H 1.08990 * 109.47197 * 150.25148 * 5 4 3 27 27 H 0.97002 * 119.99873 * 179.97438 * 9 8 6 28 28 H 1.08996 * 109.46822 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46832 * 60.00314 * 18 17 16 31 31 H 1.09004 * 109.47261 * 300.00295 * 18 17 16 32 32 H 1.09002 * 109.46716 * 180.02562 * 19 17 16 33 33 H 1.09000 * 109.47486 * 299.99934 * 19 17 16 34 34 H 1.09001 * 109.47362 * 60.00657 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2872 2.1507 -1.0823 5 6 2.1398 1.7443 -2.5260 6 6 3.4282 1.1300 -3.0091 7 1 4.2699 1.0429 -2.3380 8 6 3.5329 0.6801 -4.3082 9 7 4.6572 0.1435 -4.7297 10 14 2.0773 0.8314 -5.4692 11 1 2.1429 2.1345 -6.1780 12 1 2.1177 -0.2738 -6.4602 13 1 0.8143 0.7535 -4.6922 14 7 2.7027 3.3074 -0.6429 15 7 2.7044 3.3067 0.6430 16 6 2.2896 2.1498 1.0824 17 6 2.1459 1.7419 2.5261 18 6 1.1552 2.6760 3.2238 19 6 3.5069 1.8321 3.2193 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3334 1.0166 -2.6181 26 1 1.9074 2.6223 -3.1286 27 1 4.7307 -0.1734 -5.6435 28 1 1.7783 0.7171 2.5792 29 1 1.0517 2.3812 4.2681 30 1 0.1857 2.6117 2.7299 31 1 1.5229 3.7008 3.1706 32 1 3.4031 1.5366 4.2633 33 1 4.2127 1.1666 2.7222 34 1 3.8745 2.8568 3.1662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259667877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 31.861643 kcal Electronic energy + Delta-G solvation = -15589.113287 eV Core-core repulsion = 13135.841413 eV Total energy + Delta-G solvation = -2453.271874 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.02780 -36.91961 -36.54855 -35.23310 -32.78740 -31.41626 -29.42383 -28.05072 -25.51209 -24.72252 -24.12749 -21.40980 -20.65362 -19.14471 -17.95902 -16.92466 -16.52732 -16.21213 -15.55858 -15.05448 -14.93347 -14.26384 -14.09688 -14.02302 -13.90743 -13.22232 -13.05243 -12.93473 -12.67659 -12.47798 -12.29909 -12.17540 -12.15624 -11.96562 -11.89936 -11.74537 -11.13020 -10.99882 -10.84843 -9.81855 -8.36031 -6.45271 0.99068 1.36899 1.40053 1.49561 1.68294 1.97965 2.31414 2.97517 3.34356 3.65115 3.76339 3.89553 4.04924 4.17590 4.29941 4.32772 4.41801 4.60238 4.73282 4.80339 4.81355 4.87271 4.94358 5.03493 5.08970 5.16506 5.27179 5.29092 5.34804 5.40618 5.48247 6.05373 6.18898 6.57595 7.18012 7.90229 8.80540 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038394 B = 0.007812 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.101718 B = 3583.539316 C = 3782.070489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.088 3.912 3 N -0.468 5.468 4 C 0.209 3.791 5 C 0.075 3.925 6 C -0.527 4.527 7 H 0.018 0.982 8 C 0.019 3.981 9 N -0.942 5.942 10 Si 0.952 3.048 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.235 1.235 14 N -0.357 5.357 15 N -0.338 5.338 16 C 0.169 3.831 17 C -0.002 4.002 18 C -0.133 4.133 19 C -0.138 4.138 20 H 0.070 0.930 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.272 0.728 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 -3.796 14.441 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.033 4.033 3 N -0.159 5.159 4 C -0.060 4.060 5 C 0.036 3.964 6 C -0.566 4.566 7 H 0.037 0.963 8 C -0.180 4.180 9 N -0.581 5.581 10 Si 0.773 3.227 11 H -0.195 1.195 12 H -0.201 1.201 13 H -0.158 1.158 14 N -0.196 5.196 15 N -0.177 5.177 16 C -0.100 4.100 17 C -0.022 4.022 18 C -0.191 4.191 19 C -0.196 4.196 20 H 0.089 0.911 21 H 0.066 0.934 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.140 0.860 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.470 -2.464 14.296 18.494 hybrid contribution -0.049 -1.024 -1.132 1.527 sum -11.519 -3.488 13.164 17.837 Atomic orbital electron populations 1.22123 0.91783 1.05015 1.02667 1.22260 0.97378 0.77568 1.06092 1.46368 1.49258 1.14837 1.05391 1.25112 0.99112 0.88298 0.93455 1.18072 0.97549 0.97502 0.83312 1.20808 0.97426 1.40784 0.97564 0.96346 1.25911 0.99302 0.93391 0.99396 1.70042 1.28183 1.41466 1.18400 0.85649 0.79933 0.78504 0.78592 1.19464 1.20114 1.15762 1.74097 1.21397 1.20353 1.03776 1.73935 1.20623 1.20027 1.03115 1.25514 1.02010 0.88950 0.93507 1.19839 0.98865 1.01652 0.81890 1.21754 0.97238 0.98752 1.01317 1.21793 0.94348 1.01940 1.01511 0.91053 0.93418 0.87254 0.89232 0.86035 0.92208 0.93568 0.91927 0.87020 0.88287 0.92888 0.93342 0.88022 0.94017 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 71.98 0.74 -2.44 16 2 C 0.09 2.37 6.26 86.38 0.54 2.91 16 3 N -0.47 -17.47 2.75 -504.00 -1.38 -18.85 16 4 C 0.21 9.83 7.22 137.98 1.00 10.82 16 5 C 0.08 3.64 4.21 29.10 0.12 3.76 16 6 C -0.53 -30.64 9.65 25.60 0.25 -30.39 16 7 H 0.02 1.23 7.98 -2.91 -0.02 1.20 16 8 C 0.02 1.06 5.47 84.65 0.46 1.52 16 9 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 10 Si 0.95 41.94 27.47 68.60 1.88 43.83 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 14 N -0.36 -18.26 12.21 -50.15 -0.61 -18.87 16 15 N -0.34 -15.22 12.21 -50.15 -0.61 -15.83 16 16 C 0.17 6.04 6.54 137.98 0.90 6.94 16 17 C 0.00 -0.04 3.27 -11.54 -0.04 -0.08 16 18 C -0.13 -2.56 9.18 71.98 0.66 -1.90 16 19 C -0.14 -3.03 9.17 71.98 0.66 -2.37 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.09 2.78 7.82 -2.39 -0.02 2.76 16 24 H 0.12 2.40 7.18 -2.39 -0.02 2.38 16 25 H 0.06 2.56 6.93 -2.38 -0.02 2.54 16 26 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.11 1.88 6.89 -2.39 -0.02 1.86 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -76.65 286.54 5.88 -70.78 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.01 Total: 7.90 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.29 Total: -11.22 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -2.31 Total: -111.28 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.83 kcal Total: -76.65 5.88 -70.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.637 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds