Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46859 * 264.71001 * 3 2 1 5 5 H 1.48493 * 109.47294 * 24.71112 * 3 2 1 6 6 H 1.48505 * 109.47210 * 144.71420 * 3 2 1 7 7 C 1.37881 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 3.13414 * 7 2 1 9 9 C 1.50701 * 119.99595 * 183.12663 * 7 2 1 10 10 H 1.08996 * 110.27769 * 332.82594 * 9 7 2 11 11 C 1.54596 * 110.30513 * 94.92132 * 9 7 2 12 12 C 1.54940 * 103.08602 * 96.86576 * 11 9 7 13 13 N 1.49009 * 103.00483 * 37.39442 * 12 11 9 14 14 C 1.47900 * 105.87177 * 320.82872 * 13 12 11 15 15 H 1.08996 * 110.08418 * 265.89077 * 14 13 12 16 16 C 1.52998 * 109.91731 * 144.68379 * 14 13 12 17 17 C 1.53001 * 109.47438 * 182.40943 * 16 14 13 18 18 C 1.52993 * 109.47601 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47076 * 60.00146 * 18 17 16 20 20 C 1.53007 * 109.47010 * 299.99895 * 19 18 17 21 21 C 1.53003 * 109.46756 * 60.00152 * 20 19 18 22 22 H 0.97001 * 119.99975 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.72277 * 215.31124 * 11 9 7 24 24 H 1.08994 * 110.72610 * 338.41454 * 11 9 7 25 25 H 1.08999 * 110.66601 * 155.93762 * 12 11 9 26 26 H 1.08998 * 110.66611 * 279.06617 * 12 11 9 27 27 H 1.00894 * 110.97010 * 200.29688 * 13 12 11 28 28 H 1.08999 * 109.47600 * 302.41513 * 16 14 13 29 29 H 1.08999 * 109.47190 * 300.00821 * 17 16 14 30 30 H 1.09006 * 109.46789 * 59.99812 * 17 16 14 31 31 H 1.08999 * 109.47281 * 300.00474 * 18 17 16 32 32 H 1.08996 * 109.47406 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47306 * 180.02562 * 19 18 17 34 34 H 1.08991 * 109.47374 * 60.00195 * 19 18 17 35 35 H 1.09001 * 109.47246 * 300.00245 * 20 19 18 36 36 H 1.08998 * 109.46840 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.46712 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47168 * 60.00044 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6084 1.9818 -1.3941 5 1 1.3952 2.6823 0.5853 6 1 3.4864 1.4750 0.8088 7 6 2.0045 -1.1941 0.0005 8 1 1.4657 -2.1287 -0.0502 9 6 3.5098 -1.1950 0.0717 10 1 3.9086 -0.2734 -0.3523 11 6 3.9776 -1.3584 1.5361 12 6 4.2628 -2.8773 1.6459 13 7 4.8494 -3.2053 0.3160 14 6 4.0793 -2.4180 -0.6711 15 1 3.2650 -3.0188 -1.0759 16 6 4.9998 -1.9578 -1.8032 17 6 4.2068 -1.0946 -2.7866 18 6 5.1272 -0.6350 -3.9190 19 6 5.6864 -1.8575 -4.6497 20 6 6.4796 -2.7207 -3.6663 21 6 5.5591 -3.1803 -2.5339 22 1 -0.4850 0.8401 -0.0004 23 1 4.8844 -0.7815 1.7180 24 1 3.1890 -1.0630 2.2282 25 1 4.9762 -3.0780 2.4451 26 1 3.3381 -3.4317 1.8061 27 1 4.7794 -4.1934 0.1243 28 1 5.8219 -1.3744 -1.3887 29 1 3.3847 -1.6781 -3.2011 30 1 3.8080 -0.2240 -2.2659 31 1 5.9495 -0.0517 -3.5048 32 1 4.5623 -0.0198 -4.6193 33 1 6.3425 -1.5301 -5.4562 34 1 4.8642 -2.4408 -5.0639 35 1 7.3019 -2.1373 -3.2521 36 1 6.8776 -3.5918 -4.1868 37 1 6.1240 -3.7955 -1.8336 38 1 4.7368 -3.7637 -2.9481 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -50.261520 kcal Electronic energy + Delta-G solvation = -16381.528473 eV Core-core repulsion = 14028.235815 eV Total energy + Delta-G solvation = -2353.292658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43390 -38.11532 -34.73584 -32.53430 -31.98718 -31.07328 -28.54991 -26.15193 -23.44155 -23.16104 -21.72706 -20.63055 -20.33490 -18.97532 -17.37155 -16.54423 -16.02525 -15.60628 -15.06898 -14.90101 -14.78221 -14.47095 -14.09766 -13.51383 -13.31035 -13.08041 -12.92135 -12.69445 -12.53200 -12.30700 -11.98077 -11.92060 -11.80399 -11.77957 -11.58893 -11.27434 -10.94256 -10.76361 -10.69378 -10.59759 -9.35518 -8.30183 -6.31529 1.31213 1.32924 1.43645 2.32848 3.05510 3.40002 3.81943 3.97989 4.04846 4.14411 4.33246 4.39080 4.47934 4.51588 4.64909 4.69944 4.73395 4.77457 4.82829 4.84346 4.90284 5.07865 5.16632 5.22819 5.26769 5.32212 5.36937 5.37626 5.43460 5.47180 5.52774 5.62583 5.69759 5.74846 5.98921 6.32862 6.60654 6.74115 7.32871 8.86812 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.011302 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.039377 B = 2476.858816 C = 3190.424405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.015 3.985 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.499 4.499 8 H 0.025 0.975 9 C 0.008 3.992 10 H 0.037 0.963 11 C -0.128 4.128 12 C 0.051 3.949 13 N -0.660 5.660 14 C 0.088 3.912 15 H 0.021 0.979 16 C -0.058 4.058 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.105 4.105 22 H 0.264 0.736 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.336 0.664 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.014 -3.755 -5.382 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.537 4.537 8 H 0.043 0.957 9 C -0.011 4.011 10 H 0.055 0.945 11 C -0.166 4.166 12 C -0.078 4.078 13 N -0.289 5.289 14 C -0.022 4.022 15 H 0.039 0.961 16 C -0.077 4.077 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.143 4.143 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.043 0.957 27 H 0.151 0.849 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.451 -3.216 -5.340 15.738 hybrid contribution -1.641 0.358 0.206 1.692 sum 12.810 -2.858 -5.134 14.094 Atomic orbital electron populations 1.70048 1.08147 1.27862 1.53058 1.25826 0.95304 1.02630 0.94374 0.85954 0.79482 0.79243 0.79643 1.18847 1.21620 1.17165 1.21181 0.91069 0.92374 1.49076 0.95672 1.19987 0.93411 0.95059 0.92664 0.94490 1.22758 0.98975 0.96240 0.98666 1.22937 0.97047 0.95285 0.92503 1.63159 1.53247 1.10739 1.01731 1.22205 0.92610 0.94500 0.92855 0.96084 1.20971 0.96569 0.96695 0.93440 1.21563 0.97994 0.99006 0.96779 1.21536 0.98768 0.98244 0.96829 1.21526 0.99682 0.96067 0.97961 1.21509 0.97763 0.99745 0.95997 1.21496 0.98813 0.96585 0.97397 0.92685 0.92232 0.93434 0.88751 0.95652 0.84877 0.91732 0.93686 0.94382 0.91741 0.92202 0.90534 0.92552 0.91788 0.90699 0.91020 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.02 0.90 5.47 84.66 0.46 1.36 16 3 Si 0.93 44.73 26.95 68.60 1.85 46.58 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.25 -11.15 6.93 99.48 0.69 -10.46 16 7 C -0.50 -28.31 8.61 25.60 0.22 -28.09 16 8 H 0.02 1.60 7.92 -2.91 -0.02 1.58 16 9 C 0.01 0.38 1.54 -10.66 -0.02 0.37 16 10 H 0.04 1.74 3.86 -2.39 -0.01 1.73 16 11 C -0.13 -5.34 6.59 31.80 0.21 -5.14 16 12 C 0.05 1.82 7.59 86.56 0.66 2.48 16 13 N -0.66 -22.40 6.52 -479.03 -3.12 -25.53 16 14 C 0.09 3.50 2.49 45.06 0.11 3.61 16 15 H 0.02 0.94 7.59 -2.39 -0.02 0.92 16 16 C -0.06 -1.95 1.82 -10.79 -0.02 -1.97 16 17 C -0.12 -4.12 4.94 30.59 0.15 -3.97 16 18 C -0.12 -3.22 5.92 30.59 0.18 -3.04 16 19 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 20 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 21 C -0.11 -2.87 5.07 30.60 0.16 -2.71 16 22 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.34 9.96 8.92 -89.70 -0.80 9.16 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.57 6.51 -2.38 -0.02 1.56 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.85 7.70 -2.39 -0.02 1.83 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.26 286.83 1.70 -61.57 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.20 Total: 18.67 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.48 Total: -41.87 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.83 Total: -84.95 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.85 Total: 46.58 kcal Total: -63.26 1.70 -61.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.305 kcal (2) G-P(sol) polarization free energy of solvation -63.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds