Wall clock time and date at job start Mon Mar 30 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47587 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47212 * 300.00715 * 3 2 1 6 6 H 1.48501 * 109.46878 * 60.00479 * 3 2 1 7 7 C 1.37887 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00142 * 359.71728 * 7 2 1 10 10 H 1.09000 * 110.01555 * 59.57815 * 9 7 2 11 11 C 1.53877 * 110.03188 * 298.19093 * 9 7 2 12 12 C 1.54374 * 106.54198 * 240.72730 * 11 9 7 13 13 C 1.54884 * 104.19742 * 336.35258 * 12 11 9 14 14 C 1.54265 * 110.03166 * 180.97135 * 9 7 2 15 15 H 1.08998 * 110.48702 * 24.21486 * 14 9 7 16 16 N 1.46900 * 110.48129 * 261.57062 * 14 9 7 17 17 C 1.46854 * 110.99579 * 187.22497 * 16 14 9 18 18 C 1.53038 * 109.52215 * 174.16332 * 17 16 14 19 19 C 1.53127 * 109.27869 * 59.17774 * 18 17 16 20 20 C 1.53114 * 109.16086 * 302.34738 * 19 18 17 21 21 C 1.46850 * 110.99930 * 63.02127 * 16 14 9 22 22 H 0.96999 * 119.99901 * 359.97438 * 1 2 3 23 23 H 1.09005 * 110.03184 * 359.97438 * 11 9 7 24 24 H 1.08994 * 110.03520 * 121.42780 * 11 9 7 25 25 H 1.09001 * 110.46417 * 217.68399 * 12 11 9 26 26 H 1.09003 * 110.50799 * 95.04233 * 12 11 9 27 27 H 1.09004 * 110.75825 * 279.65527 * 13 12 11 28 28 H 1.09007 * 110.75726 * 156.28587 * 13 12 11 29 29 H 1.09000 * 109.46233 * 294.17569 * 17 16 14 30 30 H 1.08997 * 109.45956 * 54.14761 * 17 16 14 31 31 H 1.08999 * 109.50338 * 299.24340 * 18 17 16 32 32 H 1.08993 * 109.50805 * 179.12387 * 18 17 16 33 33 H 1.09002 * 109.51960 * 182.44100 * 19 18 17 34 34 H 1.09002 * 109.56919 * 62.28328 * 19 18 17 35 35 H 1.08997 * 109.50685 * 297.70892 * 20 19 18 36 36 H 1.09002 * 109.50138 * 177.58729 * 20 19 18 37 37 H 1.09000 * 109.45933 * 305.85034 * 21 16 14 38 38 H 1.08996 * 109.46334 * 65.83031 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 0.0053 10 1 0.6116 -2.5648 -0.8750 11 6 0.4014 -2.6116 1.2834 12 6 0.9073 -3.8591 2.0391 13 6 1.5585 -4.7322 0.9379 14 6 2.2418 -3.6814 0.0280 15 1 3.1962 -3.3711 0.4536 16 7 2.4316 -4.2191 -1.3258 17 6 3.2355 -5.4477 -1.2960 18 6 3.2902 -6.0572 -2.6988 19 6 3.9080 -5.0439 -3.6665 20 6 3.0797 -3.7564 -3.6423 21 6 3.0312 -3.2136 -2.2122 22 1 -0.4850 0.8400 0.0004 23 1 0.5345 -1.7224 1.8996 24 1 -0.6501 -2.7326 1.0234 25 1 0.0742 -4.3879 2.5022 26 1 1.6461 -3.5776 2.7894 27 1 0.7999 -5.2866 0.3854 28 1 2.2967 -5.4093 1.3679 29 1 4.2462 -5.2124 -0.9627 30 1 2.7830 -6.1612 -0.6074 31 1 2.2810 -6.3054 -3.0273 32 1 3.8997 -6.9605 -2.6796 33 1 3.9091 -5.4575 -4.6750 34 1 4.9312 -4.8247 -3.3614 35 1 2.0672 -3.9684 -3.9856 36 1 3.5391 -3.0158 -4.2971 37 1 2.4303 -2.3045 -2.1890 38 1 4.0429 -2.9889 -1.8746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:37 Heat of formation + Delta-G solvation = -39.937085 kcal Electronic energy + Delta-G solvation = -16360.523658 eV Core-core repulsion = 14007.678701 eV Total energy + Delta-G solvation = -2352.844957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35867 -37.89752 -34.60327 -33.38537 -31.79171 -29.86594 -28.11489 -26.03730 -24.13421 -23.83122 -21.02608 -20.61438 -20.32458 -18.26170 -17.33693 -16.68722 -15.67623 -15.58616 -15.25016 -15.01898 -14.52769 -14.29538 -14.11169 -13.89134 -13.45138 -13.08620 -12.89762 -12.53706 -12.40282 -12.28831 -12.05667 -11.82761 -11.63069 -11.47724 -11.38164 -11.29406 -10.96467 -10.72201 -10.68439 -10.44353 -9.05160 -8.09850 -6.17622 1.36245 1.38665 1.48824 2.42325 3.14094 3.23363 3.94939 4.00203 4.10491 4.14228 4.16711 4.35616 4.43710 4.56696 4.68886 4.72407 4.79107 4.90680 4.96159 4.96870 5.04196 5.12603 5.14271 5.16547 5.20342 5.27916 5.31687 5.41556 5.51532 5.52344 5.62130 5.67834 5.92354 5.96510 6.30838 6.52929 6.57422 6.93346 7.47726 8.99114 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.010209 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.697093 B = 2741.910812 C = 3542.885330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.514 4.514 8 H 0.042 0.958 9 C 0.056 3.944 10 H -0.001 1.001 11 C -0.088 4.088 12 C -0.118 4.118 13 C -0.103 4.103 14 C 0.090 3.910 15 H 0.017 0.983 16 N -0.535 5.535 17 C 0.049 3.951 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.113 4.113 21 C 0.061 3.939 22 H 0.258 0.742 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 -10.995 -3.119 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.037 3.963 10 H 0.017 0.983 11 C -0.127 4.127 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.018 4.018 15 H 0.035 0.965 16 N -0.260 5.260 17 C -0.078 4.078 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.068 4.068 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 5.716 -10.992 -3.313 12.825 hybrid contribution 0.884 1.788 0.426 2.040 sum 6.600 -9.204 -2.887 11.688 Atomic orbital electron populations 1.70115 1.07072 1.26837 1.51640 1.25661 0.95540 1.01977 0.95355 0.85717 0.79105 0.80561 0.77572 1.19436 1.20734 1.20703 1.21485 0.92144 0.91955 1.49667 0.93946 1.19158 0.92497 0.91445 0.93227 0.98306 1.21886 0.97136 0.95936 0.97709 1.22358 0.99863 0.96006 0.97321 1.22458 0.99364 0.96454 0.95774 1.22528 0.96518 0.95189 0.87547 0.96513 1.62035 1.48942 1.05464 1.09534 1.22213 0.94683 0.92130 0.98806 1.21572 1.01634 0.98119 0.93450 1.21563 0.98442 0.94966 1.00272 1.21587 1.00743 0.98012 0.94748 1.21990 0.95983 0.95291 0.93493 0.93266 0.95078 0.95935 0.90921 0.92225 0.91097 0.90689 0.96213 0.90074 0.91646 0.89527 0.90104 0.92430 0.92116 0.91233 0.92303 0.97055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 12.37 21.45 0.27 -54.22 16 2 C 0.01 0.75 5.07 84.66 0.43 1.18 16 3 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.51 -28.70 6.88 25.60 0.18 -28.52 16 8 H 0.04 2.38 7.55 -2.91 -0.02 2.36 16 9 C 0.06 2.86 1.77 -10.82 -0.02 2.84 16 10 H 0.00 -0.07 7.87 -2.39 -0.02 -0.09 16 11 C -0.09 -4.29 5.58 31.36 0.17 -4.12 16 12 C -0.12 -4.41 6.83 31.70 0.22 -4.20 16 13 C -0.10 -3.61 5.11 31.88 0.16 -3.45 16 14 C 0.09 3.83 2.14 45.99 0.10 3.93 16 15 H 0.02 0.77 7.68 -2.39 -0.02 0.75 16 16 N -0.54 -20.47 4.48 -864.83 -3.88 -24.35 16 17 C 0.05 1.47 5.27 86.32 0.46 1.92 16 18 C -0.11 -2.64 6.09 30.65 0.19 -2.46 16 19 C -0.11 -2.77 6.00 30.67 0.18 -2.59 16 20 C -0.11 -3.46 6.09 30.65 0.19 -3.27 16 21 C 0.06 2.38 5.07 86.33 0.44 2.81 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.03 1.66 7.20 -2.38 -0.02 1.64 16 24 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.07 2.21 7.82 -2.38 -0.02 2.19 16 29 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 2.21 6.67 -2.39 -0.02 2.20 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.79 6.01 -2.39 -0.01 2.78 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -61.70 286.45 2.10 -59.60 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.99 Total: 8.17 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 2.69 Total: -35.92 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.61 Total: -78.57 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.70 2.10 -59.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.667 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds