Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47268 * 240.00250 * 3 2 1 5 5 H 1.48502 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46860 * 120.00052 * 3 2 1 7 7 C 1.37883 * 119.99443 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99977 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.01826 * 65.54622 * 9 7 2 11 11 C 1.54262 * 110.03270 * 304.15777 * 9 7 2 12 12 C 1.54892 * 104.19277 * 217.10681 * 11 9 7 13 13 C 1.54884 * 102.75113 * 37.94066 * 12 11 9 14 14 C 1.53874 * 110.02901 * 186.98654 * 9 7 2 15 15 H 1.08996 * 110.03136 * 238.56769 * 14 9 7 16 16 N 1.46898 * 110.03589 * 359.95362 * 14 9 7 17 17 C 1.46842 * 111.00436 * 198.32941 * 16 14 9 18 18 C 1.53034 * 109.52716 * 174.16108 * 17 16 14 19 19 C 1.53121 * 109.27829 * 59.17514 * 18 17 16 20 20 C 1.53119 * 109.16196 * 302.35070 * 19 18 17 21 21 C 1.46846 * 110.99697 * 74.11665 * 16 14 9 22 22 H 0.97004 * 119.99751 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.48831 * 98.42935 * 11 9 7 24 24 H 1.08995 * 110.60003 * 335.83626 * 11 9 7 25 25 H 1.09003 * 110.75466 * 156.25912 * 12 11 9 26 26 H 1.09001 * 110.75775 * 279.62331 * 12 11 9 27 27 H 1.09003 * 110.48693 * 80.73493 * 13 12 11 28 28 H 1.08997 * 110.48868 * 203.37917 * 13 12 11 29 29 H 1.09000 * 109.45874 * 294.17735 * 17 16 14 30 30 H 1.09002 * 109.46001 * 54.14104 * 17 16 14 31 31 H 1.09001 * 109.49877 * 299.23797 * 18 17 16 32 32 H 1.08998 * 109.50289 * 179.11909 * 18 17 16 33 33 H 1.09000 * 109.52312 * 182.44182 * 19 18 17 34 34 H 1.09000 * 109.57386 * 62.28907 * 19 18 17 35 35 H 1.08998 * 109.50179 * 297.70886 * 20 19 18 36 36 H 1.09002 * 109.53001 * 177.61447 * 20 19 18 37 37 H 1.09001 * 109.46721 * 305.85620 * 21 16 14 38 38 H 1.08998 * 109.46408 * 65.83820 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6968 -2.6101 -0.9326 11 6 0.2824 -2.5501 1.1991 12 6 0.3300 -4.0271 1.6632 13 6 1.8223 -4.3967 1.4748 14 6 2.2300 -3.6732 0.1747 15 1 2.1511 -4.3547 -0.6723 16 7 3.6051 -3.1691 0.2882 17 6 4.5799 -4.2345 0.0219 18 6 5.9915 -3.6437 0.0052 19 6 6.2810 -2.9877 1.3582 20 6 5.2234 -1.9153 1.6333 21 6 3.8340 -2.5562 1.6028 22 1 -0.4850 0.8401 0.0004 23 1 -0.7265 -2.2808 0.8866 24 1 0.6234 -1.8889 1.9956 25 1 0.0401 -4.1125 2.7105 26 1 -0.3048 -4.6506 1.0336 27 1 2.4142 -4.0338 2.3150 28 1 1.9372 -5.4749 1.3635 29 1 4.5124 -4.9919 0.8029 30 1 4.3653 -4.6898 -0.9449 31 1 6.0637 -2.8960 -0.7846 32 1 6.7160 -4.4374 -0.1769 33 1 7.2690 -2.5278 1.3360 34 1 6.2480 -3.7421 2.1443 35 1 5.2835 -1.1403 0.8692 36 1 5.3989 -1.4735 2.6142 37 1 3.0777 -1.7925 1.7843 38 1 3.7702 -3.3215 2.3764 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = -0.075314 kcal Electronic energy + Delta-G solvation = -16764.019685 eV Core-core repulsion = 14412.903264 eV Total energy + Delta-G solvation = -2351.116421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20339 -36.11543 -32.44041 -31.73998 -30.29328 -28.03432 -26.36234 -24.15743 -22.57983 -22.46634 -20.11849 -18.85518 -18.11954 -16.52171 -14.99021 -14.79820 -14.27546 -14.01695 -13.92335 -13.52316 -13.20992 -12.72175 -12.33018 -12.02659 -11.62446 -11.47878 -10.89646 -10.77264 -10.68179 -10.63096 -10.35046 -10.26885 -9.91342 -9.87041 -9.74797 -9.62664 -9.38424 -8.95735 -8.42349 -8.18144 -7.18794 -5.80772 -3.76255 3.42491 3.47366 3.50593 4.59277 4.75001 5.25910 5.31785 5.37948 5.48495 5.65127 5.74929 5.80007 5.85909 5.94179 6.03656 6.08573 6.18273 6.25924 6.34478 6.37268 6.48403 6.49180 6.58701 6.63510 6.78254 6.83853 6.90334 7.03928 7.11943 7.32256 7.46168 7.78317 8.02310 8.10860 8.17348 8.24296 8.77211 9.32624 9.84338 11.29553 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.013500 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.028542 B = 2073.522057 C = 2961.100531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.052 3.948 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.492 4.492 8 H 0.090 0.910 9 C 0.051 3.949 10 H 0.022 0.978 11 C -0.086 4.086 12 C -0.131 4.131 13 C -0.160 4.160 14 C 0.089 3.911 15 H 0.056 0.944 16 N -0.501 5.501 17 C 0.051 3.949 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.118 4.118 21 C 0.049 3.951 22 H 0.254 0.746 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -7.023 3.066 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.530 4.530 8 H 0.108 0.892 9 C 0.032 3.968 10 H 0.040 0.960 11 C -0.125 4.125 12 C -0.169 4.169 13 C -0.199 4.199 14 C -0.020 4.020 15 H 0.075 0.925 16 N -0.224 5.224 17 C -0.078 4.078 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.079 4.079 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.531 -6.526 2.691 10.322 hybrid contribution 0.286 0.240 0.585 0.694 sum 7.817 -6.287 3.276 10.553 Atomic orbital electron populations 1.70008 1.05846 1.25880 1.52257 1.25042 0.94666 0.98752 0.96277 0.86811 0.79578 0.83999 0.78454 1.20547 1.21948 1.20518 1.21609 0.94828 0.89090 1.47486 0.89188 1.19279 0.91126 0.92320 0.94082 0.95990 1.22237 1.00609 0.90657 0.98970 1.22573 0.95079 1.00241 0.98980 1.23130 0.97940 0.98232 1.00634 1.22452 0.88585 0.96605 0.94313 0.92545 1.62114 1.02129 1.28120 1.30032 1.22088 0.92897 0.93188 0.99585 1.21548 0.95913 0.99808 0.97914 1.21566 0.98490 0.98348 0.97177 1.21602 0.94839 0.98090 1.01029 1.22436 0.97710 0.98896 0.88822 0.93605 0.92510 0.93000 0.93733 0.93149 0.91059 0.94121 0.96378 0.91835 0.91241 0.92775 0.92820 0.93037 0.91195 0.92590 0.86878 0.96370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.94 55.43 0.66 -25.23 16 2 C 0.05 1.43 5.28 -17.82 -0.09 1.34 16 3 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.49 -12.96 6.13 -34.44 -0.21 -13.17 16 8 H 0.09 2.34 4.90 -52.49 -0.26 2.09 16 9 C 0.05 1.24 2.82 -90.66 -0.26 0.99 16 10 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 11 C -0.09 -2.02 5.07 -25.07 -0.13 -2.15 16 12 C -0.13 -2.51 6.91 -24.74 -0.17 -2.68 16 13 C -0.16 -2.97 5.94 -25.07 -0.15 -3.12 16 14 C 0.09 1.83 2.92 -66.59 -0.19 1.64 16 15 H 0.06 1.14 7.83 -51.93 -0.41 0.73 16 16 N -0.50 -9.82 3.13 -225.36 -0.71 -10.53 16 17 C 0.05 0.84 5.30 -3.84 -0.02 0.82 16 18 C -0.11 -1.66 6.09 -26.65 -0.16 -1.82 16 19 C -0.12 -1.68 6.00 -26.61 -0.16 -1.84 16 20 C -0.12 -1.97 6.07 -26.65 -0.16 -2.13 16 21 C 0.05 0.92 3.36 -3.83 -0.01 0.91 16 22 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.06 1.43 7.78 -51.93 -0.40 1.03 16 24 H 0.05 1.29 7.83 -51.93 -0.41 0.89 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.33 4.94 -51.93 -0.26 1.07 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.29 8.01 -51.93 -0.42 -0.13 16 30 H 0.06 1.02 7.95 -51.93 -0.41 0.60 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 2.51 5.66 -51.93 -0.29 2.22 16 38 H 0.02 0.34 5.96 -51.93 -0.31 0.03 16 LS Contribution 278.28 15.07 4.19 4.19 Total: -1.00 -27.38 278.28 -9.11 -36.49 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.52 Total: -0.23 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.72 Total: -21.24 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.04 Total: -35.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.38 -9.11 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.418 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds