Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47268 * 240.00250 * 3 2 1 5 5 H 1.48502 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46860 * 120.00052 * 3 2 1 7 7 C 1.37883 * 119.99443 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99977 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.01826 * 65.54622 * 9 7 2 11 11 C 1.54262 * 110.03270 * 304.15777 * 9 7 2 12 12 C 1.54892 * 104.19277 * 217.10681 * 11 9 7 13 13 C 1.54884 * 102.75113 * 37.94066 * 12 11 9 14 14 C 1.53874 * 110.02901 * 186.98654 * 9 7 2 15 15 H 1.08996 * 110.03136 * 238.56769 * 14 9 7 16 16 N 1.46898 * 110.03589 * 359.95362 * 14 9 7 17 17 C 1.46842 * 111.00436 * 198.32941 * 16 14 9 18 18 C 1.53034 * 109.52716 * 174.16108 * 17 16 14 19 19 C 1.53121 * 109.27829 * 59.17514 * 18 17 16 20 20 C 1.53119 * 109.16196 * 302.35070 * 19 18 17 21 21 C 1.46846 * 110.99697 * 74.11665 * 16 14 9 22 22 H 0.97004 * 119.99751 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.48831 * 98.42935 * 11 9 7 24 24 H 1.08995 * 110.60003 * 335.83626 * 11 9 7 25 25 H 1.09003 * 110.75466 * 156.25912 * 12 11 9 26 26 H 1.09001 * 110.75775 * 279.62331 * 12 11 9 27 27 H 1.09003 * 110.48693 * 80.73493 * 13 12 11 28 28 H 1.08997 * 110.48868 * 203.37917 * 13 12 11 29 29 H 1.09000 * 109.45874 * 294.17735 * 17 16 14 30 30 H 1.09002 * 109.46001 * 54.14104 * 17 16 14 31 31 H 1.09001 * 109.49877 * 299.23797 * 18 17 16 32 32 H 1.08998 * 109.50289 * 179.11909 * 18 17 16 33 33 H 1.09000 * 109.52312 * 182.44182 * 19 18 17 34 34 H 1.09000 * 109.57386 * 62.28907 * 19 18 17 35 35 H 1.08998 * 109.50179 * 297.70886 * 20 19 18 36 36 H 1.09002 * 109.53001 * 177.61447 * 20 19 18 37 37 H 1.09001 * 109.46721 * 305.85620 * 21 16 14 38 38 H 1.08998 * 109.46408 * 65.83820 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6968 -2.6101 -0.9326 11 6 0.2824 -2.5501 1.1991 12 6 0.3300 -4.0271 1.6632 13 6 1.8223 -4.3967 1.4748 14 6 2.2300 -3.6732 0.1747 15 1 2.1511 -4.3547 -0.6723 16 7 3.6051 -3.1691 0.2882 17 6 4.5799 -4.2345 0.0219 18 6 5.9915 -3.6437 0.0052 19 6 6.2810 -2.9877 1.3582 20 6 5.2234 -1.9153 1.6333 21 6 3.8340 -2.5562 1.6028 22 1 -0.4850 0.8401 0.0004 23 1 -0.7265 -2.2808 0.8866 24 1 0.6234 -1.8889 1.9956 25 1 0.0401 -4.1125 2.7105 26 1 -0.3048 -4.6506 1.0336 27 1 2.4142 -4.0338 2.3150 28 1 1.9372 -5.4749 1.3635 29 1 4.5124 -4.9919 0.8029 30 1 4.3653 -4.6898 -0.9449 31 1 6.0637 -2.8960 -0.7846 32 1 6.7160 -4.4374 -0.1769 33 1 7.2690 -2.5278 1.3360 34 1 6.2480 -3.7421 2.1443 35 1 5.2835 -1.1403 0.8692 36 1 5.3989 -1.4735 2.6142 37 1 3.0777 -1.7925 1.7843 38 1 3.7702 -3.3215 2.3764 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = -14.590456 kcal Electronic energy + Delta-G solvation = -16764.649109 eV Core-core repulsion = 14412.903264 eV Total energy + Delta-G solvation = -2351.745845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73717 -37.63140 -34.41837 -33.23247 -31.62994 -29.91621 -27.95188 -26.03108 -24.08495 -23.82112 -21.63325 -20.51641 -19.66943 -18.38661 -16.73194 -16.49765 -16.03492 -15.45530 -15.31949 -14.84263 -14.82025 -14.22416 -14.07642 -13.49671 -13.27432 -12.97194 -12.78415 -12.51223 -12.39284 -12.13036 -12.06929 -11.58958 -11.50716 -11.45613 -11.29221 -11.12307 -11.08368 -10.76232 -10.39302 -10.29114 -8.68206 -7.93211 -5.92403 1.44810 1.45912 1.52344 2.54930 3.30242 3.37468 4.00175 4.04373 4.10663 4.16622 4.23905 4.32772 4.48694 4.58951 4.71808 4.78209 4.81763 4.91878 5.00279 5.05054 5.07973 5.13026 5.17309 5.18280 5.22899 5.33408 5.36590 5.46296 5.56771 5.63191 5.65039 5.86161 6.04283 6.10532 6.47263 6.65581 6.82048 7.21912 7.70706 9.16462 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.013500 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.028542 B = 2073.522057 C = 2961.100531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.485 4.485 8 H 0.093 0.907 9 C 0.041 3.959 10 H -0.016 1.016 11 C -0.077 4.077 12 C -0.121 4.121 13 C -0.148 4.148 14 C 0.093 3.907 15 H 0.060 0.940 16 N -0.523 5.523 17 C 0.051 3.949 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.118 4.118 21 C 0.054 3.946 22 H 0.249 0.751 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.829 -8.613 3.925 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.524 4.524 8 H 0.111 0.889 9 C 0.022 3.978 10 H 0.002 0.998 11 C -0.116 4.116 12 C -0.159 4.159 13 C -0.187 4.187 14 C -0.016 4.016 15 H 0.078 0.922 16 N -0.246 5.246 17 C -0.077 4.077 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.074 4.074 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.783 -8.125 3.553 13.204 hybrid contribution -0.412 0.717 0.284 0.874 sum 9.371 -7.408 3.837 12.547 Atomic orbital electron populations 1.70157 1.07131 1.26048 1.54171 1.25724 0.95332 1.01800 0.96809 0.85924 0.78395 0.80511 0.78667 1.20379 1.22351 1.19463 1.21927 0.95086 0.89940 1.45424 0.88923 1.19288 0.92092 0.93695 0.92705 0.99799 1.21976 0.98338 0.93479 0.97789 1.22496 0.96304 0.96825 1.00259 1.23018 0.96821 0.99603 0.99263 1.22248 0.88646 0.94890 0.95788 0.92180 1.61978 1.02134 1.29927 1.30557 1.22163 0.92964 0.92548 1.00043 1.21555 0.95331 1.00318 0.97704 1.21532 0.98328 0.97771 0.97291 1.21597 0.94445 0.98388 1.01117 1.22261 0.97908 0.98195 0.88989 0.94168 0.95509 0.95371 0.91749 0.91977 0.90894 0.91247 0.95128 0.91609 0.92680 0.89806 0.90865 0.91669 0.93368 0.91278 0.90863 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 11.94 21.45 0.26 -55.65 16 2 C 0.00 -0.05 5.28 84.66 0.45 0.39 16 3 Si 0.94 45.24 29.54 68.60 2.03 47.26 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.49 -26.25 6.13 25.60 0.16 -26.09 16 8 H 0.09 4.90 4.90 -2.91 -0.01 4.88 16 9 C 0.04 2.07 2.82 -10.82 -0.03 2.04 16 10 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 11 C -0.08 -3.72 5.07 31.67 0.16 -3.56 16 12 C -0.12 -4.48 6.91 31.88 0.22 -4.26 16 13 C -0.15 -5.12 5.94 31.67 0.19 -4.93 16 14 C 0.09 3.75 2.92 45.64 0.13 3.88 16 15 H 0.06 2.35 7.83 -2.39 -0.02 2.33 16 16 N -0.52 -19.77 3.13 -866.90 -2.72 -22.49 16 17 C 0.05 1.51 5.30 86.33 0.46 1.97 16 18 C -0.11 -2.86 6.09 30.65 0.19 -2.67 16 19 C -0.11 -2.77 6.00 30.67 0.18 -2.58 16 20 C -0.12 -3.69 6.07 30.65 0.19 -3.51 16 21 C 0.05 1.98 3.36 86.33 0.29 2.27 16 22 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 23 H 0.03 1.40 7.78 -2.39 -0.02 1.38 16 24 H 0.03 1.44 7.83 -2.39 -0.02 1.42 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.51 4.94 -2.39 -0.01 2.50 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 0.85 8.01 -2.39 -0.02 0.83 16 30 H 0.07 1.92 7.95 -2.39 -0.02 1.91 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.70 8.04 -2.39 -0.02 1.69 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 3.27 5.66 -2.39 -0.01 3.26 16 38 H 0.03 1.05 5.96 -2.39 -0.01 1.04 16 Total: -1.00 -60.56 278.28 3.15 -57.41 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.01 Total: 10.52 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 2.58 Total: -37.06 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.46 Total: -78.14 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -60.56 3.15 -57.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.815 kcal (2) G-P(sol) polarization free energy of solvation -60.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds