Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48501 * 109.47071 * 264.86292 * 3 2 1 5 5 H 1.48490 * 109.47410 * 24.86797 * 3 2 1 6 6 H 1.48503 * 109.46880 * 144.86970 * 3 2 1 7 7 C 1.37875 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00540 * 4.93797 * 7 2 1 9 9 C 1.50707 * 120.00030 * 184.94340 * 7 2 1 10 10 H 1.09005 * 110.05169 * 333.82948 * 9 7 2 11 11 C 1.54262 * 110.03274 * 95.24451 * 9 7 2 12 12 C 1.54896 * 104.31038 * 142.96227 * 11 9 7 13 13 C 1.54889 * 102.74941 * 321.99443 * 12 11 9 14 14 C 1.54215 * 110.14633 * 212.27613 * 9 7 2 15 15 H 1.08992 * 110.00876 * 121.44077 * 14 9 7 16 16 N 1.46903 * 110.06366 * 0.05329 * 14 9 7 17 17 C 1.46851 * 111.00007 * 199.76771 * 16 14 9 18 18 C 1.53039 * 109.52052 * 174.16100 * 17 16 14 19 19 C 1.53124 * 109.27931 * 59.18469 * 18 17 16 20 20 C 1.53122 * 109.15559 * 302.34499 * 19 18 17 21 21 C 1.46855 * 110.99950 * 75.56109 * 16 14 9 22 22 H 0.97005 * 119.99919 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.48405 * 24.22316 * 11 9 7 24 24 H 1.08995 * 110.49074 * 261.70365 * 11 9 7 25 25 H 1.08997 * 110.75197 * 80.30709 * 12 11 9 26 26 H 1.08995 * 110.75381 * 203.67564 * 12 11 9 27 27 H 1.08998 * 110.48595 * 156.62076 * 13 12 11 28 28 H 1.08997 * 110.48608 * 279.26255 * 13 12 11 29 29 H 1.08994 * 109.46222 * 294.17883 * 17 16 14 30 30 H 1.08995 * 109.45564 * 54.15172 * 17 16 14 31 31 H 1.09002 * 109.50594 * 299.24125 * 18 17 16 32 32 H 1.09004 * 109.53082 * 179.14102 * 18 17 16 33 33 H 1.08994 * 109.52390 * 182.43779 * 19 18 17 34 34 H 1.08997 * 109.51888 * 62.24365 * 19 18 17 35 35 H 1.08995 * 109.50006 * 297.70857 * 20 19 18 36 36 H 1.09005 * 109.53122 * 177.61422 * 20 19 18 37 37 H 1.09003 * 109.45987 * 305.85734 * 21 16 14 38 38 H 1.09006 * 109.46079 * 65.83278 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6051 1.9837 -1.3945 5 1 1.3966 2.6815 0.5887 6 1 3.4882 1.4738 0.8057 7 6 2.0044 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0815 9 6 3.5073 -1.1966 0.1119 10 1 3.9123 -0.2595 -0.2701 11 6 3.9267 -1.3927 1.5834 12 6 5.1913 -2.2838 1.5056 13 6 4.8513 -3.2597 0.3519 14 6 4.0965 -2.3868 -0.6720 15 1 4.7860 -2.0260 -1.4351 16 7 3.0169 -3.1632 -1.2962 17 6 3.4720 -4.5169 -1.6381 18 6 2.2880 -5.3405 -2.1498 19 6 1.6912 -4.6560 -3.3827 20 6 1.2697 -3.2314 -3.0117 21 6 2.4831 -2.4689 -2.4750 22 1 -0.4850 0.8401 -0.0004 23 1 3.1379 -1.8978 2.1409 24 1 4.1638 -0.4335 2.0436 25 1 6.0698 -1.6871 1.2604 26 1 5.3397 -2.8262 2.4393 27 1 5.7634 -3.6621 -0.0887 28 1 4.2118 -4.0663 0.7105 29 1 4.2358 -4.4583 -2.4135 30 1 3.8902 -4.9940 -0.7518 31 1 1.5297 -5.4111 -1.3700 32 1 2.6285 -6.3406 -2.4180 33 1 0.8209 -5.2159 -3.7247 34 1 2.4374 -4.6200 -4.1763 35 1 0.4954 -3.2689 -2.2455 36 1 0.8829 -2.7240 -3.8955 37 1 2.1833 -1.4586 -2.1966 38 1 3.2516 -2.4201 -3.2466 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -23.227511 kcal Electronic energy + Delta-G solvation = -16661.404452 eV Core-core repulsion = 14309.284076 eV Total energy + Delta-G solvation = -2352.120376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48438 -37.78893 -34.47026 -33.39838 -31.84974 -30.26330 -28.06796 -25.79237 -24.05390 -23.81672 -21.01846 -20.57454 -20.12774 -18.87279 -17.02657 -16.48853 -15.85184 -15.58425 -15.22939 -15.02910 -14.55122 -14.32602 -14.07708 -13.91296 -13.67835 -13.07642 -12.82124 -12.60752 -12.12954 -12.08007 -11.76511 -11.65081 -11.62868 -11.52900 -11.43916 -11.26086 -11.03602 -10.87573 -10.70025 -10.47976 -8.72492 -8.04606 -5.96924 1.33974 1.37946 1.45635 2.46648 3.21849 3.30756 3.93222 4.03656 4.09228 4.15196 4.19775 4.29392 4.46676 4.61056 4.63054 4.75706 4.79099 4.85490 4.90741 4.96253 4.98456 5.03553 5.10089 5.15346 5.21924 5.31151 5.32120 5.34705 5.43403 5.53953 5.58187 5.66143 5.73067 5.90786 6.49053 6.64440 6.83768 7.16096 7.59871 9.10558 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.012960 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.904436 B = 2160.001529 C = 3001.757650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.004 3.996 3 Si 0.917 3.083 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.253 1.253 7 C -0.447 4.447 8 H 0.066 0.934 9 C 0.003 3.997 10 H 0.017 0.983 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.089 3.911 15 H 0.022 0.978 16 N -0.520 5.520 17 C 0.046 3.954 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.109 4.109 21 C 0.066 3.934 22 H 0.255 0.745 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 -8.611 -3.682 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.190 4.190 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.084 0.916 9 C -0.017 4.017 10 H 0.035 0.965 11 C -0.156 4.156 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.019 4.019 15 H 0.040 0.960 16 N -0.245 5.245 17 C -0.081 4.081 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.062 4.062 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 9.459 -8.541 -3.351 13.178 hybrid contribution 0.280 1.530 -0.567 1.656 sum 9.739 -7.011 -3.918 12.623 Atomic orbital electron populations 1.70049 1.07668 1.26566 1.55612 1.25711 0.95130 1.01420 0.96765 0.86202 0.79563 0.81304 0.78535 1.20410 1.22598 1.17692 1.21220 0.90566 0.93350 1.43408 0.91607 1.19962 0.95341 0.93398 0.92965 0.96512 1.22531 0.96862 0.98155 0.98031 1.22438 0.96966 0.97299 0.98560 1.22466 0.98937 0.97691 0.95533 1.22291 0.89958 0.94544 0.95114 0.95980 1.61854 1.33383 1.01947 1.27267 1.22279 0.96239 0.90111 0.99477 1.21559 0.97497 0.98584 0.97292 1.21537 1.00761 0.94834 0.97727 1.21450 0.97339 0.96575 0.99351 1.21969 0.95448 0.99057 0.89679 0.93645 0.93515 0.94174 0.91173 0.90499 0.90444 0.91077 0.95564 0.89872 0.93040 0.89491 0.91075 0.91612 0.94102 0.92081 0.91899 0.96604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.07 13.96 21.45 0.30 -59.77 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.92 45.28 27.00 68.60 1.85 47.13 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 6 H -0.25 -11.70 6.73 99.48 0.67 -11.03 16 7 C -0.45 -24.50 5.68 25.60 0.15 -24.35 16 8 H 0.07 4.04 6.80 -2.91 -0.02 4.02 16 9 C 0.00 0.13 2.37 -10.70 -0.03 0.10 16 10 H 0.02 0.79 5.41 -2.38 -0.01 0.77 16 11 C -0.12 -4.78 6.34 31.67 0.20 -4.58 16 12 C -0.11 -3.53 6.91 31.89 0.22 -3.31 16 13 C -0.11 -3.36 5.08 31.67 0.16 -3.20 16 14 C 0.09 3.45 2.75 45.76 0.13 3.58 16 15 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 16 N -0.52 -20.43 3.00 -866.19 -2.60 -23.02 16 17 C 0.05 1.42 5.01 86.33 0.43 1.86 16 18 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 19 C -0.11 -3.14 6.00 30.68 0.18 -2.95 16 20 C -0.11 -4.02 6.09 30.64 0.19 -3.84 16 21 C 0.07 2.71 4.65 86.32 0.40 3.11 16 22 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 23 H 0.05 2.06 7.85 -2.39 -0.02 2.04 16 24 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.26 6.62 -2.39 -0.02 2.24 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 2.35 5.75 -2.39 -0.01 2.33 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.06 3.12 5.88 -2.39 -0.01 3.11 16 38 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -63.27 279.61 3.20 -60.07 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.97 Total: 11.41 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.68 Total: -35.83 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.30 Total: -82.79 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.85 Total: 47.13 kcal Total: -63.27 3.20 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds