Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48500 * 109.47475 * 89.99935 * 3 2 1 5 5 H 1.48500 * 109.46834 * 209.99853 * 3 2 1 6 6 H 1.48503 * 109.47177 * 329.99854 * 3 2 1 7 7 C 1.37877 * 120.00662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00427 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.50055 * 305.36496 * 9 7 2 11 11 C 1.53118 * 109.50429 * 65.44281 * 9 7 2 12 12 C 1.53122 * 109.15900 * 177.55886 * 11 9 7 13 13 C 1.53034 * 109.30923 * 302.40305 * 12 11 9 14 14 N 1.46843 * 109.52430 * 59.16061 * 13 12 11 15 15 C 1.46850 * 111.19832 * 298.25643 * 14 13 12 16 16 H 1.09000 * 109.45302 * 301.73324 * 15 14 13 17 17 C 1.52997 * 109.46402 * 181.75810 * 15 14 13 18 18 C 1.54264 * 110.03195 * 60.34332 * 17 15 14 19 19 C 1.54968 * 104.15838 * 217.13694 * 18 17 15 20 20 C 1.54884 * 102.77927 * 37.89095 * 19 18 17 21 21 C 1.53879 * 110.03097 * 303.12623 * 17 15 14 22 22 H 0.96993 * 120.00122 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.51931 * 297.49974 * 11 9 7 24 24 H 1.08994 * 109.52468 * 57.68764 * 11 9 7 25 25 H 1.09005 * 109.50174 * 182.44146 * 12 11 9 26 26 H 1.09001 * 109.50236 * 62.36290 * 12 11 9 27 27 H 1.08997 * 109.46351 * 299.14392 * 13 12 11 28 28 H 1.09003 * 109.46382 * 179.17540 * 13 12 11 29 29 H 1.00903 * 111.00079 * 62.35235 * 14 13 12 30 30 H 1.09001 * 110.01659 * 181.73822 * 17 15 14 31 31 H 1.08991 * 110.48657 * 335.78438 * 18 17 15 32 32 H 1.09001 * 110.48299 * 98.42934 * 18 17 15 33 33 H 1.09002 * 110.71680 * 279.57226 * 19 18 17 34 34 H 1.09002 * 110.92289 * 156.29786 * 19 18 17 35 35 H 1.09001 * 110.48584 * 203.40617 * 20 19 18 36 36 H 1.08998 * 110.48959 * 80.75923 * 20 19 18 37 37 H 1.08999 * 110.03246 * 238.56634 * 21 17 15 38 38 H 1.09002 * 110.03138 * 359.95102 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 1.4000 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8758 -0.5994 -0.8368 11 6 4.0223 -0.5938 1.3139 12 6 5.5523 -0.6534 1.3322 13 6 6.0042 -2.1054 1.1612 14 7 5.4910 -2.6327 -0.1096 15 6 4.0227 -2.6304 -0.1313 16 1 3.6464 -3.2277 0.6992 17 6 3.5313 -3.2266 -1.4518 18 6 4.0312 -4.6791 -1.5942 19 6 4.3530 -4.8230 -3.1033 20 6 4.9572 -3.4416 -3.4580 21 6 4.1195 -2.4400 -2.6365 22 1 -0.4850 0.8400 -0.0004 23 1 3.6967 0.4437 1.3912 24 1 3.6260 -1.1643 2.1538 25 1 5.9202 -0.2672 2.2828 26 1 5.9497 -0.0501 0.5160 27 1 5.6184 -2.7053 1.9855 28 1 7.0933 -2.1490 1.1591 29 1 5.8650 -2.1174 -0.8923 30 1 2.4423 -3.2010 -1.4905 31 1 4.9293 -4.8337 -0.9964 32 1 3.2509 -5.3814 -1.3011 33 1 3.4436 -5.0054 -3.6758 34 1 5.0799 -5.6174 -3.2723 35 1 4.8526 -3.2420 -4.5244 36 1 6.0051 -3.3960 -3.1613 37 1 3.3159 -2.0335 -3.2505 38 1 4.7542 -1.6330 -2.2705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -25.228878 kcal Electronic energy + Delta-G solvation = -16609.172904 eV Core-core repulsion = 14256.965743 eV Total energy + Delta-G solvation = -2352.207161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21341 -36.44590 -33.00962 -31.21992 -30.68765 -28.20165 -27.09699 -24.67746 -22.79661 -21.12517 -20.38743 -19.43971 -18.29419 -16.76082 -15.74722 -15.04794 -14.69623 -14.00805 -13.84645 -13.67570 -12.87093 -12.82777 -12.65069 -12.09312 -11.71335 -11.53085 -11.26264 -11.15861 -10.64792 -10.54451 -10.49222 -10.39590 -10.22507 -9.94558 -9.88407 -9.77863 -9.62800 -9.43633 -8.81605 -8.52598 -7.53902 -6.06083 -4.03878 3.25819 3.36275 3.37439 4.41460 4.88198 5.11838 5.24692 5.26551 5.31818 5.44868 5.64577 5.76973 5.91771 5.97593 6.01440 6.11897 6.18851 6.21242 6.24513 6.26627 6.30372 6.41569 6.43636 6.55198 6.62875 6.75235 6.77395 6.82524 6.87472 7.02655 7.18128 7.20077 7.42237 7.60946 7.88690 8.05034 8.54585 8.98436 9.57311 11.06934 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.011663 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.342557 B = 2400.253503 C = 2985.290052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.297 1.297 7 C -0.502 4.502 8 H 0.076 0.924 9 C -0.014 4.014 10 H 0.029 0.971 11 C -0.120 4.120 12 C -0.161 4.161 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.110 3.890 16 H 0.071 0.929 17 C -0.073 4.073 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.113 4.113 22 H 0.262 0.738 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.331 0.669 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -5.004 -2.563 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.224 1.224 7 C -0.540 4.540 8 H 0.094 0.906 9 C -0.035 4.035 10 H 0.047 0.953 11 C -0.158 4.158 12 C -0.200 4.200 13 C -0.067 4.067 14 N -0.315 5.315 15 C 0.000 4.000 16 H 0.089 0.911 17 C -0.092 4.092 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.151 4.151 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.765 -5.567 -2.366 12.349 hybrid contribution 0.091 2.206 0.048 2.208 sum 10.857 -3.361 -2.318 11.599 Atomic orbital electron populations 1.69896 1.06197 1.26739 1.51239 1.24991 0.94589 0.98820 0.94686 0.86913 0.80062 0.84080 0.77870 1.20761 1.19218 1.22414 1.20959 0.88590 0.94291 1.50157 0.90645 1.19848 0.97405 0.93443 0.92767 0.95332 1.21986 0.92195 1.00339 1.01288 1.22357 0.98747 0.98317 1.00626 1.21883 0.98349 0.93155 0.93282 1.60859 1.09166 1.57689 1.03755 1.21433 0.84944 0.96550 0.97031 0.91129 1.21696 1.00986 0.93016 0.93514 1.22435 1.01105 0.96638 0.95364 1.22457 0.99674 0.96657 0.97223 1.22342 0.99332 0.95456 0.98733 1.22110 0.98759 0.97556 0.96664 0.92811 0.93758 0.92342 0.93014 0.93090 0.91494 0.92113 0.85037 0.89579 0.90380 0.93030 0.92339 0.92680 0.92905 0.92080 0.92238 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.88 22.00 24.65 -169.99 -4.19 17.81 16 4 H -0.28 -6.93 6.90 56.52 0.39 -6.54 16 5 H -0.27 -6.43 6.39 56.52 0.36 -6.07 16 6 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.50 -13.54 8.22 -34.44 -0.28 -13.82 16 8 H 0.08 2.20 7.25 -52.49 -0.38 1.82 16 9 C -0.01 -0.32 1.14 -91.69 -0.10 -0.43 16 10 H 0.03 0.68 5.34 -51.93 -0.28 0.40 16 11 C -0.12 -2.56 4.85 -26.61 -0.13 -2.69 16 12 C -0.16 -2.78 6.08 -26.65 -0.16 -2.94 16 13 C 0.06 0.99 6.55 -3.84 -0.03 0.96 16 14 N -0.69 -11.36 5.56 -106.76 -0.59 -11.95 16 15 C 0.11 2.11 1.65 -67.72 -0.11 2.00 16 16 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.07 -1.34 2.58 -89.50 -0.23 -1.57 16 18 C -0.12 -1.83 6.27 -25.03 -0.16 -1.99 16 19 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 20 C -0.12 -1.70 6.83 -25.07 -0.17 -1.87 16 21 C -0.11 -1.92 5.43 -25.61 -0.14 -2.06 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 23 H 0.04 1.01 4.05 -51.93 -0.21 0.80 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.33 5.37 6.81 -39.29 -0.27 5.10 16 30 H 0.09 1.81 6.78 -51.93 -0.35 1.46 16 31 H 0.08 1.23 7.17 -51.93 -0.37 0.86 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.01 5.14 -51.93 -0.27 0.74 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -28.22 275.07 -8.03 -36.25 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.39 Total: 4.70 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.78 Total: -24.36 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.18 Total: -38.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.19 Total: 17.81 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.22 -8.03 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.022 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds