Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48500 * 109.47475 * 89.99935 * 3 2 1 5 5 H 1.48500 * 109.46834 * 209.99853 * 3 2 1 6 6 H 1.48503 * 109.47177 * 329.99854 * 3 2 1 7 7 C 1.37877 * 120.00662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00427 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.50055 * 305.36496 * 9 7 2 11 11 C 1.53118 * 109.50429 * 65.44281 * 9 7 2 12 12 C 1.53122 * 109.15900 * 177.55886 * 11 9 7 13 13 C 1.53034 * 109.30923 * 302.40305 * 12 11 9 14 14 N 1.46843 * 109.52430 * 59.16061 * 13 12 11 15 15 C 1.46850 * 111.19832 * 298.25643 * 14 13 12 16 16 H 1.09000 * 109.45302 * 301.73324 * 15 14 13 17 17 C 1.52997 * 109.46402 * 181.75810 * 15 14 13 18 18 C 1.54264 * 110.03195 * 60.34332 * 17 15 14 19 19 C 1.54968 * 104.15838 * 217.13694 * 18 17 15 20 20 C 1.54884 * 102.77927 * 37.89095 * 19 18 17 21 21 C 1.53879 * 110.03097 * 303.12623 * 17 15 14 22 22 H 0.96993 * 120.00122 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.51931 * 297.49974 * 11 9 7 24 24 H 1.08994 * 109.52468 * 57.68764 * 11 9 7 25 25 H 1.09005 * 109.50174 * 182.44146 * 12 11 9 26 26 H 1.09001 * 109.50236 * 62.36290 * 12 11 9 27 27 H 1.08997 * 109.46351 * 299.14392 * 13 12 11 28 28 H 1.09003 * 109.46382 * 179.17540 * 13 12 11 29 29 H 1.00903 * 111.00079 * 62.35235 * 14 13 12 30 30 H 1.09001 * 110.01659 * 181.73822 * 17 15 14 31 31 H 1.08991 * 110.48657 * 335.78438 * 18 17 15 32 32 H 1.09001 * 110.48299 * 98.42934 * 18 17 15 33 33 H 1.09002 * 110.71680 * 279.57226 * 19 18 17 34 34 H 1.09002 * 110.92289 * 156.29786 * 19 18 17 35 35 H 1.09001 * 110.48584 * 203.40617 * 20 19 18 36 36 H 1.08998 * 110.48959 * 80.75923 * 20 19 18 37 37 H 1.08999 * 110.03246 * 238.56634 * 21 17 15 38 38 H 1.09002 * 110.03138 * 359.95102 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 1.4000 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8758 -0.5994 -0.8368 11 6 4.0223 -0.5938 1.3139 12 6 5.5523 -0.6534 1.3322 13 6 6.0042 -2.1054 1.1612 14 7 5.4910 -2.6327 -0.1096 15 6 4.0227 -2.6304 -0.1313 16 1 3.6464 -3.2277 0.6992 17 6 3.5313 -3.2266 -1.4518 18 6 4.0312 -4.6791 -1.5942 19 6 4.3530 -4.8230 -3.1033 20 6 4.9572 -3.4416 -3.4580 21 6 4.1195 -2.4400 -2.6365 22 1 -0.4850 0.8400 -0.0004 23 1 3.6967 0.4437 1.3912 24 1 3.6260 -1.1643 2.1538 25 1 5.9202 -0.2672 2.2828 26 1 5.9497 -0.0501 0.5160 27 1 5.6184 -2.7053 1.9855 28 1 7.0933 -2.1490 1.1591 29 1 5.8650 -2.1174 -0.8923 30 1 2.4423 -3.2010 -1.4905 31 1 4.9293 -4.8337 -0.9964 32 1 3.2509 -5.3814 -1.3011 33 1 3.4436 -5.0054 -3.6758 34 1 5.0799 -5.6174 -3.2723 35 1 4.8526 -3.2420 -4.5244 36 1 6.0051 -3.3960 -3.1613 37 1 3.3159 -2.0335 -3.2505 38 1 4.7542 -1.6330 -2.2705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -42.968441 kcal Electronic energy + Delta-G solvation = -16609.942150 eV Core-core repulsion = 14256.965743 eV Total energy + Delta-G solvation = -2352.976407 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71012 -37.80342 -35.00842 -32.64132 -32.51183 -29.48015 -28.56090 -26.52331 -24.31597 -22.72024 -21.69186 -20.88648 -19.81510 -18.83545 -17.14078 -16.71031 -16.30345 -15.52702 -15.31964 -15.14393 -14.76193 -14.36079 -13.99334 -13.59034 -13.36765 -13.09160 -12.89965 -12.86173 -12.31489 -11.99211 -11.84246 -11.74726 -11.68089 -11.53469 -11.44156 -11.28153 -11.18525 -11.08857 -10.78431 -10.55063 -9.01615 -8.28433 -6.29181 1.24834 1.28937 1.38575 2.30044 3.06496 3.49713 3.82176 3.99800 4.01499 4.07903 4.25572 4.33351 4.45532 4.63550 4.68420 4.72687 4.76799 4.88519 4.92440 4.99202 5.01890 5.07166 5.10916 5.20670 5.21490 5.27968 5.29433 5.34711 5.53269 5.55823 5.63429 5.66524 5.71073 5.78444 6.16746 6.43439 6.67870 6.79834 7.34580 8.88104 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.011663 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.342557 B = 2400.253503 C = 2985.290052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.249 1.249 6 H -0.299 1.299 7 C -0.495 4.495 8 H 0.035 0.965 9 C -0.012 4.012 10 H 0.024 0.976 11 C -0.124 4.124 12 C -0.154 4.154 13 C 0.063 3.937 14 N -0.672 5.672 15 C 0.121 3.879 16 H 0.051 0.949 17 C -0.076 4.076 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.113 4.113 22 H 0.262 0.738 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.339 0.661 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.414 -5.118 -2.949 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.173 1.173 6 H -0.227 1.227 7 C -0.534 4.534 8 H 0.053 0.947 9 C -0.032 4.032 10 H 0.042 0.958 11 C -0.162 4.162 12 C -0.193 4.193 13 C -0.066 4.066 14 N -0.302 5.302 15 C 0.011 3.989 16 H 0.069 0.931 17 C -0.095 4.095 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.151 4.151 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.158 0.842 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.332 -5.695 -2.752 15.666 hybrid contribution -1.076 2.166 0.200 2.427 sum 13.256 -3.529 -2.553 13.953 Atomic orbital electron populations 1.70049 1.08037 1.27566 1.53692 1.25790 0.95265 1.02550 0.94905 0.85925 0.79335 0.79613 0.78292 1.19951 1.17302 1.22712 1.21254 0.91332 0.92556 1.48237 0.94668 1.19810 0.94122 0.95864 0.93423 0.95845 1.21918 0.95803 0.98813 0.99648 1.22306 0.94937 0.99786 1.02248 1.22012 1.00368 0.91831 0.92421 1.60809 1.06627 1.57922 1.04821 1.21159 0.86938 0.94027 0.96806 0.93106 1.21620 0.98495 0.95548 0.93882 1.22365 1.00990 0.94256 0.97249 1.22452 1.00338 0.97424 0.95295 1.22304 0.99435 0.94163 0.99003 1.22086 0.98569 0.98186 0.96246 0.92903 0.95344 0.93479 0.90669 0.92459 0.91651 0.88481 0.84211 0.93943 0.89774 0.93401 0.92552 0.90118 0.91447 0.90403 0.94252 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.01 0.65 5.46 84.65 0.46 1.12 16 3 Si 0.94 45.95 24.65 68.60 1.69 47.65 16 4 H -0.27 -12.93 6.90 99.48 0.69 -12.24 16 5 H -0.25 -11.30 6.39 99.48 0.64 -10.67 16 6 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 7 C -0.50 -27.92 8.22 25.60 0.21 -27.71 16 8 H 0.04 2.21 7.25 -2.91 -0.02 2.19 16 9 C -0.01 -0.53 1.14 -11.49 -0.01 -0.54 16 10 H 0.02 1.09 5.34 -2.39 -0.01 1.08 16 11 C -0.12 -5.14 4.85 30.67 0.15 -4.99 16 12 C -0.15 -4.75 6.08 30.65 0.19 -4.57 16 13 C 0.06 1.73 6.55 86.33 0.57 2.30 16 14 N -0.67 -20.40 5.56 -491.69 -2.73 -23.13 16 15 C 0.12 4.63 1.65 44.94 0.07 4.70 16 16 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.08 -2.82 2.58 -10.07 -0.03 -2.85 16 18 C -0.11 -3.32 6.27 31.70 0.20 -3.12 16 19 C -0.12 -2.93 6.91 31.91 0.22 -2.71 16 20 C -0.11 -2.80 6.83 31.67 0.22 -2.58 16 21 C -0.11 -3.74 5.43 31.32 0.17 -3.57 16 22 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.03 1.25 4.05 -2.38 -0.01 1.25 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.34 9.75 6.81 -89.69 -0.61 9.14 16 30 H 0.04 1.91 6.78 -2.39 -0.02 1.89 16 31 H 0.08 2.44 7.17 -2.39 -0.02 2.42 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.85 5.14 -2.39 -0.01 1.84 16 Total: -1.00 -63.44 275.07 2.00 -61.44 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.33 Total: 18.65 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 2.41 Total: -44.54 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.43 Total: -83.20 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.69 Total: 47.65 kcal Total: -63.44 2.00 -61.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.475 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds