Wall clock time and date at job start Mon Mar 30 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47374 * 89.99447 * 3 2 1 5 5 H 1.48503 * 109.47361 * 209.99993 * 3 2 1 6 6 H 1.48502 * 109.47014 * 329.99339 * 3 2 1 7 7 C 1.37871 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00093 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00321 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.47197 * 300.00431 * 9 7 2 11 11 C 1.53001 * 109.46928 * 59.99962 * 9 7 2 12 12 C 1.52998 * 109.47168 * 60.00388 * 11 9 7 13 13 C 1.52999 * 109.47571 * 59.99545 * 12 11 9 14 14 C 1.52996 * 109.46941 * 300.00516 * 13 12 11 15 15 H 1.08994 * 109.47130 * 299.99382 * 14 13 12 16 16 N 1.46905 * 109.46925 * 179.97438 * 14 13 12 17 17 C 1.48532 * 110.99879 * 59.10426 * 16 14 13 18 18 C 1.54936 * 103.23028 * 159.72096 * 17 16 14 19 19 C 1.54598 * 102.91776 * 322.58895 * 18 17 16 20 20 C 1.47901 * 111.00008 * 176.49973 * 16 14 13 21 21 C 1.52996 * 109.47475 * 59.99936 * 14 13 12 22 22 H 0.97001 * 120.00675 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47113 * 180.02562 * 11 9 7 24 24 H 1.09001 * 109.47294 * 300.00272 * 11 9 7 25 25 H 1.09000 * 109.47530 * 180.02562 * 12 11 9 26 26 H 1.09004 * 109.46922 * 299.99894 * 12 11 9 27 27 H 1.09004 * 109.46712 * 60.00221 * 13 12 11 28 28 H 1.08999 * 109.47023 * 180.02562 * 13 12 11 29 29 H 1.09006 * 110.66640 * 278.15576 * 17 16 14 30 30 H 1.09000 * 110.66864 * 41.28359 * 17 16 14 31 31 H 1.08994 * 110.72670 * 204.23206 * 18 17 16 32 32 H 1.08999 * 110.72477 * 80.94243 * 18 17 16 33 33 H 1.09007 * 110.30436 * 263.03843 * 19 18 17 34 34 H 1.09000 * 110.31017 * 140.87149 * 19 18 17 35 35 H 1.08997 * 109.91898 * 333.50983 * 20 16 14 36 36 H 1.08995 * 109.91345 * 94.80591 * 20 16 14 37 37 H 1.08997 * 109.47044 * 179.97438 * 21 14 13 38 38 H 1.09004 * 109.47339 * 59.99584 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8752 -0.6803 -0.8887 11 6 4.0210 -0.4724 1.2504 12 6 3.5106 -1.1934 2.4996 13 6 4.0205 -2.6359 2.5002 14 6 3.5110 -3.3574 1.2509 15 1 2.4211 -3.3574 1.2504 16 7 4.0012 -4.7423 1.2511 17 6 3.5426 -5.4690 2.4626 18 6 3.6759 -6.9577 2.0548 19 6 3.2512 -6.9482 0.5683 20 6 3.4599 -5.4963 0.0996 21 6 4.0216 -2.6365 0.0017 22 1 -0.4851 0.8400 -0.0004 23 1 5.1110 -0.4720 1.2506 24 1 3.6576 0.5552 1.2501 25 1 3.8731 -0.6792 3.3897 26 1 2.4205 -1.1935 2.4992 27 1 5.1105 -2.6359 2.5006 28 1 3.6565 -3.1496 3.3899 29 1 4.1865 -5.2439 3.3129 30 1 2.5050 -5.2235 2.6888 31 1 3.0033 -7.5808 2.6441 32 1 4.7070 -7.2954 2.1591 33 1 2.2025 -7.2296 0.4727 34 1 3.8798 -7.6262 -0.0091 35 1 2.5079 -5.0661 -0.2115 36 1 4.1696 -5.4714 -0.7272 37 1 3.6589 -3.1508 -0.8883 38 1 5.1116 -2.6364 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259759790.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:14 Heat of formation + Delta-G solvation = -11.755034 kcal Electronic energy + Delta-G solvation = -16394.007315 eV Core-core repulsion = 14042.384424 eV Total energy + Delta-G solvation = -2351.622892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21053 -36.88257 -32.66931 -31.43433 -30.27062 -28.46399 -27.57947 -24.73871 -22.17142 -21.63252 -20.09716 -19.96694 -18.67552 -16.23850 -15.74333 -15.62191 -14.71847 -14.22149 -13.60515 -13.37351 -13.05769 -12.67608 -12.58690 -12.24863 -12.12788 -11.58426 -11.39164 -11.07807 -11.03196 -10.81303 -10.68120 -10.48303 -10.37863 -10.11781 -9.88360 -9.81262 -9.12708 -9.02136 -8.76955 -8.47212 -7.90699 -6.03238 -4.00213 3.30125 3.40897 3.43028 4.39534 4.45216 4.89504 4.91673 5.15206 5.29577 5.55995 5.59963 5.62281 5.71047 5.86464 5.94035 5.95403 6.02452 6.14913 6.24148 6.26512 6.28630 6.35610 6.39672 6.44364 6.50466 6.59185 6.66818 6.80868 6.91626 7.10774 7.19981 7.27826 7.44764 7.51753 7.68362 7.86021 8.57045 8.99777 9.60552 11.09876 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041439 B = 0.008358 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.530491 B = 3349.355533 C = 3576.401887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.300 1.300 7 C -0.501 4.501 8 H 0.072 0.928 9 C 0.008 3.992 10 H 0.027 0.973 11 C -0.117 4.117 12 C -0.107 4.107 13 C -0.098 4.098 14 C 0.083 3.917 15 H 0.059 0.941 16 N -0.519 5.519 17 C 0.034 3.966 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.037 3.963 21 C -0.083 4.083 22 H 0.262 0.738 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -9.426 3.928 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.228 1.228 7 C -0.539 4.539 8 H 0.090 0.910 9 C -0.011 4.011 10 H 0.045 0.955 11 C -0.154 4.154 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.024 4.024 15 H 0.077 0.923 16 N -0.244 5.244 17 C -0.094 4.094 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.092 4.092 21 C -0.121 4.121 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.006 -9.280 3.894 12.860 hybrid contribution -0.584 1.035 0.058 1.190 sum 7.422 -8.245 3.952 11.776 Atomic orbital electron populations 1.69899 1.06249 1.26756 1.51428 1.24998 0.94613 0.98921 0.94707 0.86865 0.79862 0.83804 0.77789 1.20693 1.19222 1.22794 1.20994 0.88774 0.94097 1.50050 0.91017 1.19204 0.97015 0.91779 0.93145 0.95496 1.21835 0.97460 0.98601 0.97537 1.21372 1.02620 0.94100 0.96379 1.21448 1.00003 0.95967 0.96210 1.21841 0.98336 0.85903 0.96340 0.92338 1.64845 1.55759 1.02463 1.01294 1.23177 0.98788 0.92812 0.94592 1.22467 1.01392 0.96431 0.95810 1.22409 1.01010 0.97101 0.96406 1.22794 0.99046 0.92443 0.94872 1.21351 0.98212 0.96905 0.95676 0.92845 0.94574 0.93948 0.94146 0.90295 0.92572 0.93414 0.90516 0.93913 0.91651 0.91174 0.91860 0.91534 0.93310 0.90830 0.93121 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 22.17 24.37 -169.99 -4.14 18.03 16 4 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 5 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 6 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.50 -13.67 7.19 -34.44 -0.25 -13.92 16 8 H 0.07 2.12 6.95 -52.49 -0.36 1.76 16 9 C 0.01 0.19 2.18 -91.77 -0.20 -0.01 16 10 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 11 C -0.12 -2.55 4.94 -26.73 -0.13 -2.68 16 12 C -0.11 -2.16 5.70 -26.73 -0.15 -2.31 16 13 C -0.10 -1.78 5.04 -26.73 -0.13 -1.91 16 14 C 0.08 1.60 1.41 -67.71 -0.10 1.50 16 15 H 0.06 1.30 6.46 -51.93 -0.34 0.96 16 16 N -0.52 -8.61 5.11 -222.51 -1.14 -9.75 16 17 C 0.03 0.49 5.37 -1.90 -0.01 0.48 16 18 C -0.12 -1.46 7.06 -24.87 -0.18 -1.64 16 19 C -0.13 -1.63 6.93 -25.37 -0.18 -1.80 16 20 C 0.04 0.56 5.49 -2.76 -0.02 0.55 16 21 C -0.08 -1.71 4.65 -26.73 -0.12 -1.83 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.81 7.22 -51.93 -0.37 1.44 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.79 6.92 -51.93 -0.36 0.43 16 29 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 30 H 0.04 0.65 8.01 -51.93 -0.42 0.23 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.04 7.27 -51.93 -0.38 0.66 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -28.89 275.52 -8.47 -37.35 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.55 Total: -1.34 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.56 Total: -21.73 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.36 Total: -36.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.89 -8.47 -37.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759790.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.597 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds