Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47374 * 89.99447 * 3 2 1 5 5 H 1.48503 * 109.47361 * 209.99993 * 3 2 1 6 6 H 1.48502 * 109.47014 * 329.99339 * 3 2 1 7 7 C 1.37871 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00093 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00321 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.47197 * 300.00431 * 9 7 2 11 11 C 1.53001 * 109.46928 * 59.99962 * 9 7 2 12 12 C 1.52998 * 109.47168 * 60.00388 * 11 9 7 13 13 C 1.52999 * 109.47571 * 59.99545 * 12 11 9 14 14 C 1.52996 * 109.46941 * 300.00516 * 13 12 11 15 15 H 1.08994 * 109.47130 * 299.99382 * 14 13 12 16 16 N 1.46905 * 109.46925 * 179.97438 * 14 13 12 17 17 C 1.48532 * 110.99879 * 59.10426 * 16 14 13 18 18 C 1.54936 * 103.23028 * 159.72096 * 17 16 14 19 19 C 1.54598 * 102.91776 * 322.58895 * 18 17 16 20 20 C 1.47901 * 111.00008 * 176.49973 * 16 14 13 21 21 C 1.52996 * 109.47475 * 59.99936 * 14 13 12 22 22 H 0.97001 * 120.00675 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47113 * 180.02562 * 11 9 7 24 24 H 1.09001 * 109.47294 * 300.00272 * 11 9 7 25 25 H 1.09000 * 109.47530 * 180.02562 * 12 11 9 26 26 H 1.09004 * 109.46922 * 299.99894 * 12 11 9 27 27 H 1.09004 * 109.46712 * 60.00221 * 13 12 11 28 28 H 1.08999 * 109.47023 * 180.02562 * 13 12 11 29 29 H 1.09006 * 110.66640 * 278.15576 * 17 16 14 30 30 H 1.09000 * 110.66864 * 41.28359 * 17 16 14 31 31 H 1.08994 * 110.72670 * 204.23206 * 18 17 16 32 32 H 1.08999 * 110.72477 * 80.94243 * 18 17 16 33 33 H 1.09007 * 110.30436 * 263.03843 * 19 18 17 34 34 H 1.09000 * 110.31017 * 140.87149 * 19 18 17 35 35 H 1.08997 * 109.91898 * 333.50983 * 20 16 14 36 36 H 1.08995 * 109.91345 * 94.80591 * 20 16 14 37 37 H 1.08997 * 109.47044 * 179.97438 * 21 14 13 38 38 H 1.09004 * 109.47339 * 59.99584 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8752 -0.6803 -0.8887 11 6 4.0210 -0.4724 1.2504 12 6 3.5106 -1.1934 2.4996 13 6 4.0205 -2.6359 2.5002 14 6 3.5110 -3.3574 1.2509 15 1 2.4211 -3.3574 1.2504 16 7 4.0012 -4.7423 1.2511 17 6 3.5426 -5.4690 2.4626 18 6 3.6759 -6.9577 2.0548 19 6 3.2512 -6.9482 0.5683 20 6 3.4599 -5.4963 0.0996 21 6 4.0216 -2.6365 0.0017 22 1 -0.4851 0.8400 -0.0004 23 1 5.1110 -0.4720 1.2506 24 1 3.6576 0.5552 1.2501 25 1 3.8731 -0.6792 3.3897 26 1 2.4205 -1.1935 2.4992 27 1 5.1105 -2.6359 2.5006 28 1 3.6565 -3.1496 3.3899 29 1 4.1865 -5.2439 3.3129 30 1 2.5050 -5.2235 2.6888 31 1 3.0033 -7.5808 2.6441 32 1 4.7070 -7.2954 2.1591 33 1 2.2025 -7.2296 0.4727 34 1 3.8798 -7.6262 -0.0091 35 1 2.5079 -5.0661 -0.2115 36 1 4.1696 -5.4714 -0.7272 37 1 3.6589 -3.1508 -0.8883 38 1 5.1116 -2.6364 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259759790.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = -30.419698 kcal Electronic energy + Delta-G solvation = -16394.816676 eV Core-core repulsion = 14042.384424 eV Total energy + Delta-G solvation = -2352.432252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63936 -38.37295 -34.61564 -32.98535 -31.97774 -29.69151 -29.02232 -26.77696 -23.60355 -23.15570 -21.46592 -21.25176 -20.52328 -18.17995 -17.26916 -16.84244 -16.53610 -15.84329 -15.08504 -14.86977 -14.71055 -14.40674 -14.15157 -13.81417 -13.50929 -13.19057 -12.96487 -12.55869 -12.45882 -12.15625 -12.14393 -12.03827 -11.75577 -11.71514 -11.68064 -11.39967 -10.96082 -10.78841 -10.65330 -10.54184 -9.31564 -8.25532 -6.25770 1.30339 1.35604 1.45722 2.34738 3.06371 3.12739 3.77946 3.80626 4.00894 4.11316 4.12674 4.27535 4.41207 4.54538 4.60948 4.70056 4.74583 4.77125 4.81630 4.84768 4.92180 4.96166 5.01036 5.01697 5.09260 5.17218 5.21062 5.32841 5.33738 5.41755 5.50050 5.58180 5.71802 5.82868 6.07845 6.21296 6.37397 6.78661 7.37749 8.91294 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041439 B = 0.008358 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.530491 B = 3349.355533 C = 3576.401887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.248 1.248 6 H -0.304 1.304 7 C -0.491 4.491 8 H 0.029 0.971 9 C 0.004 3.996 10 H 0.022 0.978 11 C -0.118 4.118 12 C -0.106 4.106 13 C -0.091 4.091 14 C 0.092 3.908 15 H 0.013 0.987 16 N -0.517 5.517 17 C 0.028 3.972 18 C -0.114 4.114 19 C -0.127 4.127 20 C 0.031 3.969 21 C -0.078 4.078 22 H 0.262 0.738 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.494 -10.066 4.994 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.172 1.172 6 H -0.232 1.232 7 C -0.529 4.529 8 H 0.047 0.953 9 C -0.016 4.016 10 H 0.040 0.960 11 C -0.156 4.156 12 C -0.144 4.144 13 C -0.129 4.129 14 C -0.017 4.017 15 H 0.031 0.969 16 N -0.241 5.241 17 C -0.100 4.100 18 C -0.152 4.152 19 C -0.165 4.165 20 C -0.097 4.097 21 C -0.116 4.116 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.922 -9.941 4.963 15.581 hybrid contribution -1.535 1.131 -0.302 1.931 sum 9.387 -8.810 4.661 13.692 Atomic orbital electron populations 1.70053 1.08149 1.27610 1.53784 1.25801 0.95276 1.02689 0.94784 0.85891 0.79106 0.79193 0.78496 1.19392 1.17246 1.23237 1.21185 0.91125 0.92311 1.48324 0.95256 1.19221 0.94091 0.94134 0.94135 0.96000 1.21814 0.99400 0.97551 0.96786 1.21337 1.00178 0.95856 0.97002 1.21397 1.01010 0.94434 0.96027 1.21608 0.95614 0.87939 0.96522 0.96914 1.64864 1.55265 1.01320 1.02622 1.23318 0.98095 0.94466 0.94118 1.22470 1.02808 0.94675 0.95199 1.22409 1.01773 0.95039 0.97255 1.22861 0.97506 0.94357 0.94958 1.21261 0.99268 0.95074 0.95996 0.92923 0.91271 0.95164 0.91338 0.94269 0.90478 0.91881 0.89058 0.95557 0.89712 0.89686 0.91675 0.89376 0.96478 0.90406 0.94351 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.44 0.30 -60.24 16 2 C 0.01 0.61 5.45 84.65 0.46 1.07 16 3 Si 0.95 45.88 24.37 68.60 1.67 47.55 16 4 H -0.27 -12.39 6.87 99.48 0.68 -11.71 16 5 H -0.25 -11.21 6.53 99.48 0.65 -10.56 16 6 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 7 C -0.49 -27.86 7.19 25.60 0.18 -27.68 16 8 H 0.03 1.87 6.95 -2.91 -0.02 1.84 16 9 C 0.00 0.16 2.18 -11.54 -0.03 0.14 16 10 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 11 C -0.12 -4.89 4.94 30.59 0.15 -4.74 16 12 C -0.11 -4.11 5.70 30.59 0.17 -3.93 16 13 C -0.09 -3.10 5.04 30.59 0.15 -2.94 16 14 C 0.09 3.50 1.41 44.91 0.06 3.56 16 15 H 0.01 0.61 6.46 -2.39 -0.02 0.59 16 16 N -0.52 -16.51 5.11 -857.88 -4.38 -20.89 16 17 C 0.03 0.75 5.37 86.65 0.47 1.21 16 18 C -0.11 -2.36 7.06 31.80 0.22 -2.14 16 19 C -0.13 -2.90 6.93 31.47 0.22 -2.68 16 20 C 0.03 0.96 5.49 86.45 0.47 1.43 16 21 C -0.08 -3.15 4.65 30.59 0.14 -3.01 16 22 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 23 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 24 H 0.03 1.32 3.27 -2.39 -0.01 1.32 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.82 7.22 -2.38 -0.02 1.80 16 27 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 1.95 6.92 -2.39 -0.02 1.94 16 29 H 0.09 2.20 7.66 -2.38 -0.02 2.18 16 30 H 0.03 0.79 8.01 -2.39 -0.02 0.77 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.02 0.62 7.64 -2.39 -0.02 0.60 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.60 7.27 -2.39 -0.02 1.59 16 38 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -64.62 275.52 1.20 -63.42 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.93 Total: 9.87 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 2.69 Total: -39.71 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -4.08 Total: -81.13 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.55 kcal Total: -64.62 1.20 -63.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759790.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.998 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds