Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48491 * 109.47198 * 89.99952 * 3 2 1 5 5 H 1.48503 * 109.46660 * 209.99906 * 3 2 1 6 6 H 1.48500 * 109.46868 * 329.99477 * 3 2 1 7 7 C 1.37881 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 343.79435 * 7 2 1 9 9 C 1.50700 * 119.99589 * 163.79184 * 7 2 1 10 10 H 1.09005 * 109.63166 * 54.05043 * 9 7 2 11 11 C 1.53410 * 109.63913 * 293.43685 * 9 7 2 12 12 C 1.53008 * 109.64784 * 183.59283 * 11 9 7 13 13 C 1.53285 * 109.88638 * 56.84816 * 12 11 9 14 14 N 1.46453 * 108.84724 * 301.86674 * 13 12 11 15 15 C 1.43900 * 114.95661 * 189.88523 * 14 13 12 16 16 C 1.51698 * 110.41837 * 166.73056 * 15 14 13 17 17 C 1.53133 * 109.01841 * 113.04729 * 16 15 14 18 18 C 1.56801 * 102.70455 * 305.79828 * 17 16 15 19 19 C 1.53568 * 106.94727 * 323.95586 * 18 17 16 20 20 C 1.45614 * 111.51932 * 61.68545 * 14 13 12 21 21 H 1.08993 * 106.02904 * 50.91804 * 20 14 13 22 22 H 0.97004 * 119.99574 * 174.83331 * 1 2 3 23 23 H 1.09007 * 109.44405 * 303.64319 * 11 9 7 24 24 H 1.08997 * 109.44449 * 63.53511 * 11 9 7 25 25 H 1.09001 * 109.39929 * 296.72366 * 12 11 9 26 26 H 1.08997 * 109.33402 * 176.93824 * 12 11 9 27 27 H 1.09007 * 109.56826 * 182.05363 * 13 12 11 28 28 H 1.08999 * 109.67633 * 61.74152 * 13 12 11 29 29 H 1.08993 * 109.31024 * 287.01799 * 15 14 13 30 30 H 1.09001 * 109.31626 * 46.44037 * 15 14 13 31 31 H 1.09001 * 109.54785 * 232.90764 * 16 15 14 32 32 H 1.08999 * 109.55115 * 353.09419 * 16 15 14 33 33 H 1.09000 * 110.79291 * 64.15043 * 17 16 15 34 34 H 1.09006 * 110.78901 * 187.41002 * 17 16 15 35 35 H 1.09004 * 109.95454 * 83.31194 * 18 17 16 36 36 H 1.08996 * 109.96109 * 204.50275 * 18 17 16 37 37 H 1.08994 * 109.06392 * 340.97781 * 19 18 17 38 38 H 1.09006 * 109.05873 * 222.06015 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4967 -2.1107 0.2620 9 6 3.4666 -1.2201 -0.3638 10 1 4.0124 -0.5134 0.2614 11 6 3.6365 -0.8457 -1.8417 12 6 5.1108 -0.9588 -2.2350 13 6 5.6201 -2.3756 -1.9468 14 7 5.4301 -2.6663 -0.5240 15 6 6.0632 -3.8728 -0.0611 16 6 6.0849 -3.9108 1.4553 17 6 5.1752 -5.0436 1.9392 18 6 3.8136 -4.7179 1.2331 19 6 3.6787 -3.1885 1.2046 20 6 4.0224 -2.6259 -0.1539 21 1 3.5041 -3.2614 -0.8717 22 1 -0.4850 -0.8367 -0.0757 23 1 3.0438 -1.5220 -2.4578 24 1 3.2968 0.1781 -1.9980 25 1 5.6950 -0.2402 -1.6601 26 1 5.2181 -0.7447 -3.2983 27 1 6.6796 -2.4401 -2.1946 28 1 5.0608 -3.0953 -2.5445 29 1 5.5121 -4.7355 -0.4354 30 1 7.0855 -3.9108 -0.4373 31 1 7.1033 -4.0880 1.8011 32 1 5.7264 -2.9598 1.8491 33 1 5.5572 -6.0118 1.6154 34 1 5.0660 -5.0157 3.0234 35 1 3.8189 -5.1099 0.2160 36 1 2.9888 -5.1552 1.7957 37 1 4.3494 -2.7580 1.9482 38 1 2.6526 -2.9170 1.4531 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259764156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = 2.269765 kcal Electronic energy + Delta-G solvation = -16726.762607 eV Core-core repulsion = 14375.747877 eV Total energy + Delta-G solvation = -2351.014731 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84568 -35.97095 -33.67970 -31.68285 -30.97557 -28.89089 -25.26832 -24.35399 -24.21792 -21.01134 -20.49260 -19.13969 -18.81622 -17.44545 -15.79860 -14.94838 -14.66083 -13.88833 -13.82783 -13.44078 -13.28381 -12.68901 -12.40539 -12.33233 -12.01941 -11.83257 -11.42681 -11.29280 -10.71664 -10.63039 -10.39881 -10.27477 -10.10904 -9.97615 -9.72638 -9.56449 -9.39701 -9.10557 -8.59946 -8.17766 -7.47522 -6.36557 -3.98581 3.48149 3.50505 3.66566 4.35540 4.57942 5.07711 5.22989 5.31043 5.33468 5.42797 5.58942 5.62922 5.64554 5.82742 5.85871 5.93737 6.02227 6.08210 6.18641 6.23727 6.29813 6.40069 6.44969 6.48095 6.56571 6.67371 6.72654 6.85822 6.95860 7.07398 7.18507 7.35102 7.63530 7.80494 8.01460 8.31673 8.44524 8.97075 9.68329 11.01147 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.010925 C = 0.009033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.574671 B = 2562.212086 C = 3099.092233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 1.041 2.959 4 H -0.288 1.288 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.592 4.592 8 H 0.058 0.942 9 C 0.033 3.967 10 H 0.028 0.972 11 C -0.118 4.118 12 C -0.120 4.120 13 C 0.082 3.918 14 N -0.564 5.564 15 C 0.076 3.924 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.123 4.123 20 C 0.117 3.883 21 H 0.007 0.993 22 H 0.266 0.734 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.675 -6.634 -0.162 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.870 3.130 4 H -0.215 1.215 5 H -0.194 1.194 6 H -0.217 1.217 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.013 3.987 10 H 0.046 0.954 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.045 4.045 14 N -0.289 5.289 15 C -0.052 4.052 16 C -0.170 4.170 17 C -0.160 4.160 18 C -0.162 4.162 19 C -0.160 4.160 20 C 0.010 3.990 21 H 0.025 0.975 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.681 -4.664 0.097 12.578 hybrid contribution -0.239 -2.396 -0.625 2.488 sum 11.442 -7.060 -0.528 13.455 Atomic orbital electron populations 1.70818 1.07185 1.30309 1.46288 1.25710 0.96042 1.02385 0.93099 0.84130 0.75984 0.75775 0.77155 1.21458 1.19392 1.21664 1.22022 0.93873 0.96061 1.51055 0.92379 1.19020 0.96385 0.91620 0.91678 0.95357 1.22071 0.92700 1.00929 0.99875 1.21693 0.98869 0.95847 0.99339 1.21783 0.99063 0.96893 0.86791 1.58676 1.16803 1.36556 1.16888 1.21088 0.97754 0.90874 0.95510 1.21885 0.98752 1.00765 0.95576 1.22481 0.96260 0.97686 0.99597 1.22598 0.96425 0.97363 0.99835 1.21632 1.03919 0.92938 0.97492 1.20647 0.84222 0.98817 0.95285 0.97483 0.92390 0.93523 0.92658 0.91929 0.93045 0.92070 0.95942 0.95852 0.92599 0.93008 0.88765 0.92393 0.91787 0.92530 0.92641 0.90985 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.70 55.43 0.76 -27.21 16 2 C 0.03 0.91 5.37 -17.82 -0.10 0.82 16 3 Si 1.04 25.37 26.35 -169.99 -4.48 20.89 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.05 5.48 56.52 0.31 -5.74 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.59 -16.25 7.86 -34.44 -0.27 -16.52 16 8 H 0.06 1.71 6.74 -52.49 -0.35 1.35 16 9 C 0.03 0.77 1.56 -91.76 -0.14 0.63 16 10 H 0.03 0.70 6.72 -51.93 -0.35 0.35 16 11 C -0.12 -2.60 4.69 -26.51 -0.12 -2.72 16 12 C -0.12 -2.17 6.07 -26.58 -0.16 -2.33 16 13 C 0.08 1.40 5.70 -3.92 -0.02 1.37 16 14 N -0.56 -10.27 4.14 -232.62 -0.96 -11.23 16 15 C 0.08 1.18 5.13 -6.08 -0.03 1.15 16 16 C -0.13 -1.89 5.51 -27.32 -0.15 -2.04 16 17 C -0.12 -1.64 6.45 -24.61 -0.16 -1.80 16 18 C -0.12 -2.00 5.83 -24.38 -0.14 -2.14 16 19 C -0.12 -2.36 4.70 -27.44 -0.13 -2.49 16 20 C 0.12 2.44 1.38 -69.61 -0.10 2.35 16 21 H 0.01 0.16 7.31 -51.93 -0.38 -0.22 16 22 H 0.27 8.14 8.73 -40.82 -0.36 7.79 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.05 1.26 5.14 -51.93 -0.27 0.99 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 28 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 29 H 0.02 0.37 6.00 -51.93 -0.31 0.06 16 30 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.53 5.07 -51.93 -0.26 1.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.94 6.25 -51.93 -0.32 0.61 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.34 5.10 -51.93 -0.26 1.08 16 38 H 0.09 1.94 5.84 -51.93 -0.30 1.64 16 LS Contribution 268.10 15.07 4.04 4.04 Total: -1.00 -28.95 268.10 -8.44 -37.38 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.27 Total: -0.14 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -1.53 Total: -23.73 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.20 Total: -38.44 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.48 Total: 20.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.95 -8.44 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.653 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds