Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48491 * 109.47198 * 89.99952 * 3 2 1 5 5 H 1.48503 * 109.46660 * 209.99906 * 3 2 1 6 6 H 1.48500 * 109.46868 * 329.99477 * 3 2 1 7 7 C 1.37881 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 343.79435 * 7 2 1 9 9 C 1.50700 * 119.99589 * 163.79184 * 7 2 1 10 10 H 1.09005 * 109.63166 * 54.05043 * 9 7 2 11 11 C 1.53410 * 109.63913 * 293.43685 * 9 7 2 12 12 C 1.53008 * 109.64784 * 183.59283 * 11 9 7 13 13 C 1.53285 * 109.88638 * 56.84816 * 12 11 9 14 14 N 1.46453 * 108.84724 * 301.86674 * 13 12 11 15 15 C 1.43900 * 114.95661 * 189.88523 * 14 13 12 16 16 C 1.51698 * 110.41837 * 166.73056 * 15 14 13 17 17 C 1.53133 * 109.01841 * 113.04729 * 16 15 14 18 18 C 1.56801 * 102.70455 * 305.79828 * 17 16 15 19 19 C 1.53568 * 106.94727 * 323.95586 * 18 17 16 20 20 C 1.45614 * 111.51932 * 61.68545 * 14 13 12 21 21 H 1.08993 * 106.02904 * 50.91804 * 20 14 13 22 22 H 0.97004 * 119.99574 * 174.83331 * 1 2 3 23 23 H 1.09007 * 109.44405 * 303.64319 * 11 9 7 24 24 H 1.08997 * 109.44449 * 63.53511 * 11 9 7 25 25 H 1.09001 * 109.39929 * 296.72366 * 12 11 9 26 26 H 1.08997 * 109.33402 * 176.93824 * 12 11 9 27 27 H 1.09007 * 109.56826 * 182.05363 * 13 12 11 28 28 H 1.08999 * 109.67633 * 61.74152 * 13 12 11 29 29 H 1.08993 * 109.31024 * 287.01799 * 15 14 13 30 30 H 1.09001 * 109.31626 * 46.44037 * 15 14 13 31 31 H 1.09001 * 109.54785 * 232.90764 * 16 15 14 32 32 H 1.08999 * 109.55115 * 353.09419 * 16 15 14 33 33 H 1.09000 * 110.79291 * 64.15043 * 17 16 15 34 34 H 1.09006 * 110.78901 * 187.41002 * 17 16 15 35 35 H 1.09004 * 109.95454 * 83.31194 * 18 17 16 36 36 H 1.08996 * 109.96109 * 204.50275 * 18 17 16 37 37 H 1.08994 * 109.06392 * 340.97781 * 19 18 17 38 38 H 1.09006 * 109.05873 * 222.06015 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4967 -2.1107 0.2620 9 6 3.4666 -1.2201 -0.3638 10 1 4.0124 -0.5134 0.2614 11 6 3.6365 -0.8457 -1.8417 12 6 5.1108 -0.9588 -2.2350 13 6 5.6201 -2.3756 -1.9468 14 7 5.4301 -2.6663 -0.5240 15 6 6.0632 -3.8728 -0.0611 16 6 6.0849 -3.9108 1.4553 17 6 5.1752 -5.0436 1.9392 18 6 3.8136 -4.7179 1.2331 19 6 3.6787 -3.1885 1.2046 20 6 4.0224 -2.6259 -0.1539 21 1 3.5041 -3.2614 -0.8717 22 1 -0.4850 -0.8367 -0.0757 23 1 3.0438 -1.5220 -2.4578 24 1 3.2968 0.1781 -1.9980 25 1 5.6950 -0.2402 -1.6601 26 1 5.2181 -0.7447 -3.2983 27 1 6.6796 -2.4401 -2.1946 28 1 5.0608 -3.0953 -2.5445 29 1 5.5121 -4.7355 -0.4354 30 1 7.0855 -3.9108 -0.4373 31 1 7.1033 -4.0880 1.8011 32 1 5.7264 -2.9598 1.8491 33 1 5.5572 -6.0118 1.6154 34 1 5.0660 -5.0157 3.0234 35 1 3.8189 -5.1099 0.2160 36 1 2.9888 -5.1552 1.7957 37 1 4.3494 -2.7580 1.9482 38 1 2.6526 -2.9170 1.4531 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -16.027074 kcal Electronic energy + Delta-G solvation = -16727.556018 eV Core-core repulsion = 14375.747877 eV Total energy + Delta-G solvation = -2351.808141 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31271 -37.43485 -35.48465 -33.57926 -32.43446 -30.43735 -26.86242 -25.96088 -25.68766 -22.70154 -21.99666 -20.54017 -20.43059 -19.55738 -17.22806 -16.35510 -16.25313 -15.44561 -15.26934 -15.07970 -14.92290 -14.33804 -14.06576 -13.88708 -13.39596 -13.26158 -13.06517 -12.81404 -12.58101 -12.26286 -11.79252 -11.71338 -11.65958 -11.43872 -11.34241 -11.28162 -10.92407 -10.76963 -10.62198 -10.35560 -8.95135 -8.67129 -6.28906 1.49099 1.53623 1.73388 2.53201 2.94560 3.12230 3.87433 3.93739 4.02746 4.07817 4.17243 4.26968 4.30896 4.40944 4.53417 4.60393 4.66498 4.80896 4.83510 4.88962 4.90637 4.93950 5.02106 5.10103 5.20070 5.24039 5.28096 5.32274 5.37787 5.46362 5.55060 5.67858 5.82333 6.00221 6.10679 6.45800 6.62035 6.67348 7.46018 8.69041 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.010925 C = 0.009033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.574671 B = 2562.212086 C = 3099.092233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.021 4.021 3 Si 1.081 2.919 4 H -0.276 1.276 5 H -0.238 1.238 6 H -0.291 1.291 7 C -0.586 4.586 8 H 0.021 0.979 9 C 0.028 3.972 10 H 0.025 0.975 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.079 3.921 14 N -0.566 5.566 15 C 0.072 3.928 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.120 4.120 20 C 0.130 3.870 21 H -0.024 1.024 22 H 0.250 0.750 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.016 0.984 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 -6.940 -0.284 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.218 4.218 3 Si 0.902 3.098 4 H -0.202 1.202 5 H -0.161 1.161 6 H -0.218 1.218 7 C -0.624 4.624 8 H 0.039 0.961 9 C 0.008 3.992 10 H 0.043 0.957 11 C -0.157 4.157 12 C -0.151 4.151 13 C -0.048 4.048 14 N -0.292 5.292 15 C -0.056 4.056 16 C -0.168 4.168 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.157 4.157 20 C 0.022 3.978 21 H -0.006 1.006 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.358 -5.001 -0.026 16.152 hybrid contribution -1.417 -2.395 -0.584 2.844 sum 13.941 -7.396 -0.609 15.794 Atomic orbital electron populations 1.70948 1.08444 1.29317 1.49580 1.27096 0.96007 1.06172 0.92553 0.83655 0.76149 0.71831 0.78122 1.20232 1.16116 1.21781 1.22226 0.96116 0.94505 1.49541 0.96059 1.19001 0.93627 0.93675 0.92874 0.95707 1.21972 0.95904 0.99742 0.98052 1.21654 0.95319 0.96955 1.01212 1.21907 1.01114 0.95839 0.85931 1.58694 1.14390 1.38274 1.17822 1.21253 0.98653 0.89336 0.96356 1.21840 1.00426 0.99852 0.94679 1.22468 0.93690 0.98523 1.00083 1.22531 0.98866 0.94550 0.99988 1.21571 1.01430 0.95648 0.97082 1.20407 0.86059 0.96125 0.95171 1.00582 0.94136 0.95373 0.93555 0.91371 0.90208 0.88380 0.96541 0.96203 0.89927 0.90171 0.90922 0.90135 0.90435 0.93346 0.92436 0.89991 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.70 21.45 0.29 -60.40 16 2 C -0.02 -1.26 5.37 84.66 0.45 -0.81 16 3 Si 1.08 51.39 26.35 68.60 1.81 53.20 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.24 -10.02 5.48 99.48 0.54 -9.48 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.59 -33.67 7.86 25.60 0.20 -33.47 16 8 H 0.02 1.35 6.74 -2.91 -0.02 1.33 16 9 C 0.03 1.33 1.56 -11.53 -0.02 1.32 16 10 H 0.02 1.21 6.72 -2.38 -0.02 1.19 16 11 C -0.12 -5.17 4.69 30.73 0.14 -5.02 16 12 C -0.11 -3.78 6.07 30.69 0.19 -3.59 16 13 C 0.08 2.43 5.70 86.48 0.49 2.92 16 14 N -0.57 -19.28 4.14 -889.86 -3.68 -22.97 16 15 C 0.07 1.96 5.13 86.43 0.44 2.41 16 16 C -0.13 -3.26 5.51 30.21 0.17 -3.10 16 17 C -0.11 -2.60 6.45 31.97 0.21 -2.39 16 18 C -0.12 -3.83 5.83 32.12 0.19 -3.64 16 19 C -0.12 -4.70 4.70 30.13 0.14 -4.56 16 20 C 0.13 5.45 1.38 44.38 0.06 5.51 16 21 H -0.02 -1.12 7.31 -2.39 -0.02 -1.14 16 22 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 23 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 2.06 5.14 -2.39 -0.01 2.05 16 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 2.36 8.05 -2.38 -0.02 2.34 16 28 H 0.02 0.53 8.03 -2.39 -0.02 0.51 16 29 H 0.02 0.57 6.00 -2.39 -0.01 0.56 16 30 H 0.08 1.87 8.02 -2.39 -0.02 1.85 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.17 5.07 -2.39 -0.01 2.16 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.59 6.25 -2.38 -0.01 1.57 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 3.03 5.10 -2.39 -0.01 3.02 16 38 H 0.05 2.16 5.84 -2.38 -0.01 2.14 16 Total: -1.00 -65.77 268.10 1.91 -63.86 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.82 Total: 10.73 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 2.67 Total: -44.43 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.39 Total: -83.36 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 1.81 Total: 53.20 kcal Total: -65.77 1.91 -63.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.838 kcal (2) G-P(sol) polarization free energy of solvation -65.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds