Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50613 * 119.99785 * 0.28381 * 7 2 1 10 10 H 1.08139 * 110.11474 * 299.72200 * 9 7 2 11 11 C 1.52496 * 108.40417 * 59.93753 * 9 7 2 12 12 C 1.53340 * 108.77443 * 178.51558 * 11 9 7 13 13 C 1.52746 * 107.89925 * 299.64516 * 12 11 9 14 14 N 1.45628 * 111.08135 * 58.95237 * 13 12 11 15 15 C 1.46986 * 110.60029 * 170.83965 * 14 13 12 16 16 C 1.49177 * 115.08048 * 169.57524 * 15 14 13 17 17 C 1.49307 * 114.70954 * 296.52435 * 16 15 14 18 18 C 1.54262 * 110.74270 * 100.99952 * 17 16 15 19 19 C 1.55770 * 100.80962 * 319.24878 * 18 17 16 20 20 C 1.48004 * 114.77732 * 302.66291 * 14 13 12 21 21 H 1.07899 * 114.80147 * 286.92309 * 20 14 13 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09228 * 109.50723 * 298.60064 * 11 9 7 24 24 H 1.09223 * 109.52252 * 58.40422 * 11 9 7 25 25 H 1.09034 * 110.13264 * 180.16998 * 12 11 9 26 26 H 1.09075 * 110.06670 * 59.01523 * 12 11 9 27 27 H 1.08886 * 108.54503 * 298.31831 * 13 12 11 28 28 H 1.08823 * 108.62904 * 179.74352 * 13 12 11 29 29 H 1.10413 * 109.88610 * 291.68210 * 15 14 13 30 30 H 1.10410 * 109.91705 * 47.41745 * 15 14 13 31 31 H 1.08475 * 110.39690 * 61.72150 * 16 15 14 32 32 H 1.10172 * 107.49303 * 177.40618 * 16 15 14 33 33 H 1.09343 * 109.03539 * 220.93411 * 17 16 15 34 34 H 1.08929 * 109.67308 * 339.73485 * 17 16 15 35 35 H 1.09166 * 111.17908 * 77.32575 * 18 17 16 36 36 H 1.09125 * 111.21868 * 201.07351 * 18 17 16 37 37 H 1.09622 * 108.91957 * 187.41899 * 19 18 17 38 38 H 1.08633 * 111.30601 * 69.09007 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2513 -2.4984 -0.0053 10 1 0.6256 -2.5705 0.8737 11 6 0.3882 -2.5503 -1.2615 12 6 -0.3544 -3.8915 -1.2949 13 6 0.6900 -5.0058 -1.3235 14 7 1.5601 -4.9383 -0.1577 15 6 2.4146 -6.1317 -0.0803 16 6 3.5104 -6.0603 0.9294 17 6 4.5281 -4.9985 0.6721 18 6 4.2735 -3.7691 1.5684 19 6 2.7200 -3.6753 1.5014 20 6 2.2733 -3.6523 0.0103 21 1 3.0796 -3.4875 -0.6875 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3307 -1.7282 -1.2443 24 1 1.0234 -2.4552 -2.1449 25 1 -0.9772 -3.9534 -2.1877 26 1 -0.9748 -3.9981 -0.4042 27 1 1.2837 -4.9008 -2.2302 28 1 0.1751 -5.9643 -1.3428 29 1 1.7995 -7.0200 0.1468 30 1 2.8712 -6.3318 -1.0655 31 1 3.0988 -5.9505 1.9269 32 1 4.0377 -7.0276 0.9148 33 1 5.5226 -5.3976 0.8892 34 1 4.4932 -4.7033 -0.3759 35 1 4.6163 -3.9476 2.5894 36 1 4.7441 -2.8752 1.1558 37 1 2.3980 -2.7515 1.9958 38 1 2.2516 -4.5051 2.0231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259764159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -4.166030 kcal Electronic energy + Delta-G solvation = -16702.697498 eV Core-core repulsion = 14351.403690 eV Total energy + Delta-G solvation = -2351.293808 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23200 -35.60798 -33.68277 -31.58817 -30.51190 -28.72194 -25.20930 -24.54327 -23.55230 -21.33830 -20.35520 -18.93949 -18.49885 -16.33518 -15.32660 -14.61536 -14.34757 -14.22136 -13.85075 -13.67946 -12.92558 -12.63604 -12.37423 -12.13566 -11.56360 -11.43089 -11.23669 -10.93615 -10.72736 -10.49089 -10.44739 -10.41786 -9.98791 -9.85059 -9.77474 -9.63773 -9.33385 -8.73207 -8.50838 -8.23475 -7.36008 -5.92389 -3.98135 3.32731 3.39867 3.42668 4.39964 4.55333 5.18224 5.27021 5.34744 5.36953 5.65392 5.73292 5.85380 5.89491 5.95092 6.05376 6.11332 6.23088 6.27330 6.36539 6.42444 6.43169 6.57742 6.65670 6.72491 6.74941 6.81232 6.89153 7.15357 7.27467 7.37457 7.51601 7.80692 7.96363 7.99276 8.18893 8.28495 8.57608 9.05920 9.65426 11.12674 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.010856 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.842850 B = 2578.590805 C = 3337.778022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.058 3.942 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.119 4.119 13 C 0.077 3.923 14 N -0.559 5.559 15 C 0.077 3.923 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.115 4.115 20 C 0.107 3.893 21 H 0.053 0.947 22 H 0.258 0.742 23 H 0.093 0.907 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.014 0.986 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 -9.450 0.223 10.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.051 4.051 14 N -0.286 5.286 15 C -0.050 4.050 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.161 4.161 19 C -0.153 4.153 20 C 0.001 3.999 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.944 -9.358 0.586 10.172 hybrid contribution 0.976 0.880 -0.795 1.536 sum 4.920 -8.478 -0.209 9.805 Atomic orbital electron populations 1.69881 1.05796 1.26151 1.51042 1.24930 0.94782 0.98826 0.95392 0.86682 0.79952 0.83922 0.77957 1.20909 1.21356 1.19975 1.21180 0.92826 0.90591 1.50040 0.92808 1.18912 0.92257 0.90404 0.94542 0.94699 1.21699 0.99851 0.95141 0.98616 1.21731 0.96992 0.96851 1.00105 1.21450 0.94737 0.98550 0.90372 1.60060 1.24884 1.02278 1.41330 1.21348 0.93791 0.93017 0.96883 1.20285 0.96045 0.98156 1.00683 1.21234 0.97367 0.96308 1.00733 1.22499 0.98218 0.97135 0.98224 1.23098 0.92964 1.02398 0.96803 1.22543 0.95853 0.86982 0.94523 0.92950 0.93161 0.88891 0.95323 0.93593 0.92176 0.96751 0.92967 0.92567 0.97063 0.90908 0.93437 0.93695 0.92246 0.92512 0.91427 0.91301 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.26 55.43 0.62 -24.65 16 2 C 0.06 1.68 5.28 -17.82 -0.09 1.59 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.62 7.62 -34.48 -0.26 -13.88 16 8 H 0.05 1.43 7.72 -52.49 -0.40 1.03 16 9 C 0.06 1.42 1.41 -91.47 -0.13 1.29 16 10 H 0.03 0.96 7.53 -52.41 -0.39 0.56 16 11 C -0.12 -2.76 4.93 -26.81 -0.13 -2.89 16 12 C -0.12 -2.39 6.17 -26.69 -0.16 -2.56 16 13 C 0.08 1.42 5.36 -4.64 -0.02 1.39 16 14 N -0.56 -10.59 3.90 -226.15 -0.88 -11.47 16 15 C 0.08 1.22 5.15 -5.66 -0.03 1.19 16 16 C -0.11 -1.64 4.71 -30.43 -0.14 -1.79 16 17 C -0.12 -1.79 5.32 -27.89 -0.15 -1.93 16 18 C -0.12 -2.03 6.74 -24.59 -0.17 -2.20 16 19 C -0.11 -2.23 4.50 -23.83 -0.11 -2.33 16 20 C 0.11 2.24 1.95 -65.08 -0.13 2.12 16 21 H 0.05 1.16 6.49 -52.54 -0.34 0.82 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.09 2.49 6.02 -51.80 -0.31 2.18 16 24 H 0.03 0.69 8.16 -51.80 -0.42 0.27 16 25 H 0.05 0.83 8.14 -51.91 -0.42 0.41 16 26 H 0.06 1.25 8.15 -51.89 -0.42 0.82 16 27 H 0.01 0.27 8.13 -51.99 -0.42 -0.15 16 28 H 0.05 0.85 8.06 -52.03 -0.42 0.43 16 29 H 0.06 0.81 8.25 -51.12 -0.42 0.39 16 30 H 0.01 0.18 8.16 -51.12 -0.42 -0.24 16 31 H 0.07 1.07 6.08 -52.22 -0.32 0.75 16 32 H 0.05 0.58 8.22 -51.26 -0.42 0.16 16 33 H 0.04 0.59 8.17 -51.74 -0.42 0.17 16 34 H 0.06 0.97 6.42 -51.97 -0.33 0.64 16 35 H 0.06 0.83 8.16 -51.84 -0.42 0.41 16 36 H 0.07 1.17 8.15 -51.86 -0.42 0.75 16 37 H 0.07 1.51 6.75 -51.58 -0.35 1.16 16 38 H 0.07 1.25 5.60 -52.14 -0.29 0.96 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -27.28 275.83 -9.17 -36.45 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.52 Total: -0.71 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.53 Total: -20.00 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.26 Total: -36.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.28 -9.17 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.281 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds