Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50613 * 119.99785 * 0.28381 * 7 2 1 10 10 H 1.08139 * 110.11474 * 299.72200 * 9 7 2 11 11 C 1.52496 * 108.40417 * 59.93753 * 9 7 2 12 12 C 1.53340 * 108.77443 * 178.51558 * 11 9 7 13 13 C 1.52746 * 107.89925 * 299.64516 * 12 11 9 14 14 N 1.45628 * 111.08135 * 58.95237 * 13 12 11 15 15 C 1.46986 * 110.60029 * 170.83965 * 14 13 12 16 16 C 1.49177 * 115.08048 * 169.57524 * 15 14 13 17 17 C 1.49307 * 114.70954 * 296.52435 * 16 15 14 18 18 C 1.54262 * 110.74270 * 100.99952 * 17 16 15 19 19 C 1.55770 * 100.80962 * 319.24878 * 18 17 16 20 20 C 1.48004 * 114.77732 * 302.66291 * 14 13 12 21 21 H 1.07899 * 114.80147 * 286.92309 * 20 14 13 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09228 * 109.50723 * 298.60064 * 11 9 7 24 24 H 1.09223 * 109.52252 * 58.40422 * 11 9 7 25 25 H 1.09034 * 110.13264 * 180.16998 * 12 11 9 26 26 H 1.09075 * 110.06670 * 59.01523 * 12 11 9 27 27 H 1.08886 * 108.54503 * 298.31831 * 13 12 11 28 28 H 1.08823 * 108.62904 * 179.74352 * 13 12 11 29 29 H 1.10413 * 109.88610 * 291.68210 * 15 14 13 30 30 H 1.10410 * 109.91705 * 47.41745 * 15 14 13 31 31 H 1.08475 * 110.39690 * 61.72150 * 16 15 14 32 32 H 1.10172 * 107.49303 * 177.40618 * 16 15 14 33 33 H 1.09343 * 109.03539 * 220.93411 * 17 16 15 34 34 H 1.08929 * 109.67308 * 339.73485 * 17 16 15 35 35 H 1.09166 * 111.17908 * 77.32575 * 18 17 16 36 36 H 1.09125 * 111.21868 * 201.07351 * 18 17 16 37 37 H 1.09622 * 108.91957 * 187.41899 * 19 18 17 38 38 H 1.08633 * 111.30601 * 69.09007 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2513 -2.4984 -0.0053 10 1 0.6256 -2.5705 0.8737 11 6 0.3882 -2.5503 -1.2615 12 6 -0.3544 -3.8915 -1.2949 13 6 0.6900 -5.0058 -1.3235 14 7 1.5601 -4.9383 -0.1577 15 6 2.4146 -6.1317 -0.0803 16 6 3.5104 -6.0603 0.9294 17 6 4.5281 -4.9985 0.6721 18 6 4.2735 -3.7691 1.5684 19 6 2.7200 -3.6753 1.5014 20 6 2.2733 -3.6523 0.0103 21 1 3.0796 -3.4875 -0.6875 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3307 -1.7282 -1.2443 24 1 1.0234 -2.4552 -2.1449 25 1 -0.9772 -3.9534 -2.1877 26 1 -0.9748 -3.9981 -0.4042 27 1 1.2837 -4.9008 -2.2302 28 1 0.1751 -5.9643 -1.3428 29 1 1.7995 -7.0200 0.1468 30 1 2.8712 -6.3318 -1.0655 31 1 3.0988 -5.9505 1.9269 32 1 4.0377 -7.0276 0.9148 33 1 5.5226 -5.3976 0.8892 34 1 4.4932 -4.7033 -0.3759 35 1 4.6163 -3.9476 2.5894 36 1 4.7441 -2.8752 1.1558 37 1 2.3980 -2.7515 1.9958 38 1 2.2516 -4.5051 2.0231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -19.216398 kcal Electronic energy + Delta-G solvation = -16703.350131 eV Core-core repulsion = 14351.403690 eV Total energy + Delta-G solvation = -2351.946441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73618 -37.14832 -35.43442 -33.38973 -32.06724 -30.33734 -27.04854 -26.06578 -25.07763 -23.10991 -21.80738 -20.36378 -20.20709 -18.37163 -16.92664 -16.30898 -15.90091 -15.64843 -15.33616 -15.12524 -14.62559 -14.35456 -14.07389 -13.65073 -13.10462 -13.05778 -12.86735 -12.68976 -12.47970 -12.24261 -11.98558 -11.80582 -11.72458 -11.50073 -11.42062 -11.05895 -10.96425 -10.67826 -10.30950 -10.28867 -8.84397 -8.03518 -6.16135 1.40031 1.41198 1.50788 2.44163 3.07352 3.22830 3.94578 4.05919 4.08944 4.23781 4.29908 4.37161 4.50616 4.53203 4.62009 4.72773 4.75809 4.86189 4.94963 4.99210 5.03779 5.09374 5.16138 5.22546 5.25256 5.40042 5.44096 5.46565 5.60591 5.62945 5.68460 5.73898 6.07653 6.18815 6.35938 6.55882 6.66997 6.97111 7.50340 9.00188 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.010856 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.842850 B = 2578.590805 C = 3337.778022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.050 0.950 9 C 0.058 3.942 10 H -0.002 1.002 11 C -0.111 4.111 12 C -0.112 4.112 13 C 0.079 3.921 14 N -0.570 5.570 15 C 0.072 3.928 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.119 3.881 21 H 0.040 0.960 22 H 0.258 0.742 23 H 0.059 0.941 24 H 0.017 0.983 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.030 0.970 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -11.311 0.218 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.039 3.961 10 H 0.016 0.984 11 C -0.149 4.149 12 C -0.150 4.150 13 C -0.049 4.049 14 N -0.297 5.297 15 C -0.055 4.055 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.145 4.145 20 C 0.012 3.988 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.263 -11.235 0.579 12.420 hybrid contribution 0.539 1.445 -0.790 1.733 sum 5.802 -9.791 -0.211 11.383 Atomic orbital electron populations 1.70027 1.07074 1.26742 1.51896 1.25673 0.95578 1.02062 0.95287 0.85725 0.78910 0.80015 0.78041 1.20443 1.21103 1.19250 1.21485 0.92790 0.91976 1.49566 0.93222 1.18802 0.92611 0.91545 0.93121 0.98387 1.21538 0.99131 0.96546 0.97717 1.21643 0.97415 0.95271 1.00701 1.21463 0.94248 0.99034 0.90185 1.60045 1.25571 1.02350 1.41697 1.21506 0.94315 0.91864 0.97818 1.20282 0.95638 0.99473 0.99972 1.21189 0.99225 0.95680 0.99149 1.22471 0.95482 0.97691 1.00012 1.22988 0.95436 1.00702 0.95335 1.22194 0.94196 0.87083 0.95317 0.94190 0.93290 0.92217 0.96419 0.91407 0.93135 0.96837 0.89771 0.90332 0.96440 0.91121 0.90168 0.91006 0.93892 0.90268 0.92909 0.95078 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 11.26 21.45 0.24 -53.79 16 2 C 0.01 0.68 5.28 84.66 0.45 1.12 16 3 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.52 -28.87 7.62 25.57 0.19 -28.67 16 8 H 0.05 2.73 7.72 -2.91 -0.02 2.70 16 9 C 0.06 2.97 1.41 -11.35 -0.02 2.96 16 10 H 0.00 -0.12 7.53 -2.84 -0.02 -0.14 16 11 C -0.11 -5.51 4.93 30.54 0.15 -5.36 16 12 C -0.11 -4.49 6.17 30.62 0.19 -4.30 16 13 C 0.08 2.74 5.36 86.46 0.46 3.20 16 14 N -0.57 -20.74 3.90 -869.41 -3.39 -24.13 16 15 C 0.07 2.03 5.15 85.07 0.44 2.47 16 16 C -0.12 -2.92 4.71 28.20 0.13 -2.78 16 17 C -0.11 -3.13 5.32 29.84 0.16 -2.97 16 18 C -0.12 -3.77 6.74 31.98 0.22 -3.55 16 19 C -0.11 -4.14 4.50 32.47 0.15 -4.00 16 20 C 0.12 5.02 1.95 46.01 0.09 5.11 16 21 H 0.04 1.80 6.49 -2.96 -0.02 1.78 16 22 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 23 H 0.06 3.34 6.02 -2.27 -0.01 3.33 16 24 H 0.02 0.87 8.16 -2.27 -0.02 0.85 16 25 H 0.07 2.38 8.14 -2.37 -0.02 2.36 16 26 H 0.05 2.10 8.15 -2.35 -0.02 2.08 16 27 H 0.01 0.48 8.13 -2.45 -0.02 0.46 16 28 H 0.08 2.44 8.06 -2.48 -0.02 2.42 16 29 H 0.08 1.92 8.25 -1.63 -0.01 1.91 16 30 H 0.02 0.48 8.16 -1.63 -0.01 0.47 16 31 H 0.07 1.83 6.08 -2.66 -0.02 1.82 16 32 H 0.08 1.55 8.22 -1.76 -0.01 1.54 16 33 H 0.07 1.59 8.17 -2.20 -0.02 1.58 16 34 H 0.04 1.31 6.42 -2.42 -0.02 1.30 16 35 H 0.08 2.15 8.16 -2.30 -0.02 2.13 16 36 H 0.05 1.81 8.15 -2.32 -0.02 1.79 16 37 H 0.03 1.41 6.75 -2.06 -0.01 1.39 16 38 H 0.08 2.78 5.60 -2.58 -0.01 2.76 16 Total: -1.00 -60.55 275.83 2.51 -58.04 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.02 Total: 10.21 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.61 Total: -36.77 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.15 Total: -77.92 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.55 2.51 -58.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.824 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds