Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99723 * 2 1 4 4 H 1.48501 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46948 * 299.99489 * 3 2 1 6 6 H 1.48493 * 109.47276 * 59.99596 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99799 * 186.83678 * 7 2 1 9 9 C 1.50696 * 120.00246 * 6.82975 * 7 2 1 10 10 C 1.52995 * 109.07238 * 177.26861 * 9 7 2 11 11 N 1.46901 * 109.47475 * 306.27369 * 10 9 7 12 12 C 1.52578 * 109.07956 * 58.21500 * 9 7 2 13 13 C 1.53735 * 111.43561 * 184.73740 * 12 9 7 14 14 C 1.51632 * 107.31987 * 57.84634 * 13 12 9 15 15 H 1.09000 * 110.99898 * 56.00217 * 14 13 12 16 16 C 1.53271 * 115.81627 * 182.90132 * 14 13 12 17 17 C 1.55311 * 102.93763 * 157.12844 * 16 14 13 18 18 C 1.54906 * 106.37993 * 336.04738 * 17 16 14 19 19 C 1.52502 * 105.32838 * 356.54774 * 18 17 16 20 20 H 1.08998 * 109.78625 * 272.21757 * 19 18 17 21 21 C 1.51614 * 116.56235 * 146.65171 * 19 18 17 22 22 H 0.96998 * 120.00364 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47438 * 66.27679 * 10 9 7 24 24 H 1.09004 * 109.47338 * 186.27922 * 10 9 7 25 25 H 1.00894 * 111.00327 * 174.28117 * 11 10 9 26 26 H 1.00901 * 111.00089 * 298.24353 * 11 10 9 27 27 H 1.08994 * 109.07413 * 305.22600 * 12 9 7 28 28 H 1.09000 * 109.07262 * 64.25614 * 12 9 7 29 29 H 1.09001 * 109.89658 * 177.22027 * 13 12 9 30 30 H 1.09003 * 109.90441 * 298.34766 * 13 12 9 31 31 H 1.09004 * 110.72257 * 275.49147 * 16 14 13 32 32 H 1.08994 * 110.72041 * 38.76886 * 16 14 13 33 33 H 1.09005 * 110.07632 * 95.27746 * 17 16 14 34 34 H 1.08998 * 110.07919 * 216.75838 * 17 16 14 35 35 H 1.09003 * 110.27660 * 237.58343 * 18 17 16 36 36 H 1.09003 * 110.27745 * 115.51343 * 18 17 16 37 37 H 1.09011 * 109.89311 * 60.90020 * 21 19 18 38 38 H 1.08996 * 109.96217 * 299.82331 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0788 -1.1973 0.1119 9 6 1.2592 -2.4946 -0.1541 10 6 2.2654 -3.6466 -0.1876 11 7 3.2716 -3.3880 -1.2261 12 6 0.4832 -2.4716 -1.4676 13 6 -0.3912 -3.7262 -1.6257 14 6 -1.3261 -3.7780 -0.4330 15 1 -1.9076 -2.8596 -0.3524 16 6 -2.2464 -5.0013 -0.3590 17 6 -2.5961 -5.0825 1.1521 18 6 -1.4487 -4.3642 1.9052 19 6 -0.4419 -3.9739 0.8283 20 1 0.2585 -4.7927 0.6638 21 6 0.3214 -2.6828 1.0498 22 1 -0.4850 0.8400 -0.0004 23 1 2.7567 -3.7283 0.7820 24 1 1.7444 -4.5778 -0.4105 25 1 3.9995 -4.0864 -1.2064 26 1 2.8444 -3.3366 -2.1388 27 1 -0.1543 -1.5879 -1.4893 28 1 1.1886 -2.4222 -2.2972 29 1 -0.9704 -3.6610 -2.5467 30 1 0.2373 -4.6166 -1.6438 31 1 -3.1455 -4.8443 -0.9550 32 1 -1.7204 -5.8997 -0.6818 33 1 -3.5432 -4.5783 1.3446 34 1 -2.6567 -6.1243 1.4667 35 1 -0.9882 -5.0405 2.6255 36 1 -1.8264 -3.4747 2.4093 37 1 0.9053 -2.7500 1.9679 38 1 -0.3738 -1.8457 1.1130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -24.177663 kcal Electronic energy + Delta-G solvation = -16773.363012 eV Core-core repulsion = 14421.201435 eV Total energy + Delta-G solvation = -2352.161577 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36156 -35.75769 -32.36797 -31.69296 -30.41138 -27.71539 -26.58685 -24.23947 -23.13110 -21.33740 -19.66984 -19.41564 -17.78215 -16.01937 -15.25163 -14.41671 -14.25058 -14.09625 -13.70955 -13.56834 -12.72681 -12.51170 -12.28101 -11.97756 -11.61092 -11.03277 -10.91771 -10.77700 -10.65436 -10.49656 -10.22414 -10.14194 -9.92896 -9.76167 -9.68110 -9.46255 -9.03590 -8.83273 -8.30499 -8.08323 -7.53632 -5.79253 -3.82428 3.39298 3.47924 3.54617 4.58779 5.12541 5.26242 5.29179 5.43674 5.63504 5.85366 5.92783 6.00942 6.08181 6.22750 6.24418 6.31154 6.37450 6.41892 6.46223 6.54920 6.64649 6.74851 6.78396 6.84704 6.92519 6.98385 7.19474 7.21197 7.28039 7.64098 7.80780 7.90986 8.09538 8.20856 8.35713 8.41340 8.72673 9.21019 9.79275 11.21954 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.010471 C = 0.009222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.435789 B = 2673.443464 C = 3035.492149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.055 3.945 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.472 4.472 8 H 0.063 0.937 9 C 0.081 3.919 10 C 0.075 3.925 11 N -0.834 5.834 12 C -0.106 4.106 13 C -0.109 4.109 14 C -0.086 4.086 15 H 0.078 0.922 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.096 4.096 20 H 0.054 0.946 21 C -0.093 4.093 22 H 0.254 0.746 23 H 0.049 0.951 24 H 0.002 0.998 25 H 0.315 0.685 26 H 0.333 0.667 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -8.644 -0.413 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.081 3.919 10 C -0.055 4.055 11 N -0.362 5.362 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.104 4.104 15 H 0.096 0.904 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.114 4.114 20 H 0.072 0.928 21 C -0.132 4.132 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.020 0.980 25 H 0.125 0.875 26 H 0.146 0.854 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.903 -7.819 -0.016 8.340 hybrid contribution 0.140 -0.069 -0.399 0.428 sum -2.763 -7.888 -0.414 8.368 Atomic orbital electron populations 1.69836 1.05590 1.25534 1.52449 1.24934 0.94755 0.98665 0.95968 0.86658 0.80446 0.84489 0.77078 1.19952 1.21486 1.21668 1.21200 0.93803 0.89622 1.46477 0.91855 1.18109 0.90418 0.92343 0.91074 1.22031 0.93148 0.96747 0.93615 1.58638 1.15380 1.53967 1.08202 1.21629 0.97987 0.96872 0.97918 1.21475 0.97388 0.99616 0.96135 1.21746 0.95487 0.97141 0.96029 0.90400 1.22251 0.99089 0.98831 0.95593 1.22481 0.98509 0.99346 0.95574 1.21958 0.96250 0.99406 0.97937 1.21842 0.95968 0.99515 0.94093 0.92766 1.21508 0.98915 0.95165 0.97584 0.93595 0.93288 0.97967 0.87531 0.85436 0.89006 0.94968 0.94267 0.94002 0.92705 0.92548 0.92531 0.92993 0.93054 0.91995 0.95163 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 9.48 55.43 0.53 -23.84 16 2 C 0.06 1.50 5.08 -17.82 -0.09 1.41 16 3 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.47 -12.60 7.46 -34.44 -0.26 -12.86 16 8 H 0.06 1.78 7.49 -52.49 -0.39 1.38 16 9 C 0.08 1.88 0.28 -155.49 -0.04 1.84 16 10 C 0.07 1.55 5.05 -3.83 -0.02 1.53 16 11 N -0.83 -16.07 8.76 -10.37 -0.09 -16.16 16 12 C -0.11 -2.39 4.29 -26.57 -0.11 -2.50 16 13 C -0.11 -2.07 5.38 -27.04 -0.15 -2.22 16 14 C -0.09 -1.59 2.36 -89.97 -0.21 -1.80 16 15 H 0.08 1.63 8.07 -51.93 -0.42 1.21 16 16 C -0.12 -1.86 6.45 -25.37 -0.16 -2.02 16 17 C -0.12 -1.78 6.87 -24.50 -0.17 -1.95 16 18 C -0.12 -1.96 6.50 -25.98 -0.17 -2.13 16 19 C -0.10 -1.82 2.14 -90.37 -0.19 -2.01 16 20 H 0.05 1.03 6.00 -51.93 -0.31 0.72 16 21 C -0.09 -2.12 4.22 -27.04 -0.11 -2.23 16 22 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 23 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 24 H 0.00 0.05 5.00 -51.93 -0.26 -0.21 16 25 H 0.31 5.10 9.08 -39.30 -0.36 4.75 16 26 H 0.33 6.21 7.32 -39.29 -0.29 5.92 16 27 H 0.09 2.36 5.99 -51.93 -0.31 2.05 16 28 H 0.03 0.72 6.52 -51.93 -0.34 0.38 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.76 6.62 -51.93 -0.34 0.42 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 37 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -26.77 274.83 -8.41 -35.18 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.27 Total: 9.06 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -1.69 Total: -24.95 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.43 Total: -40.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.77 -8.41 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.001 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds