Wall clock time and date at job start Mon Mar 30 2020 03:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99723 * 2 1 4 4 H 1.48501 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46948 * 299.99489 * 3 2 1 6 6 H 1.48493 * 109.47276 * 59.99596 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99799 * 186.83678 * 7 2 1 9 9 C 1.50696 * 120.00246 * 6.82975 * 7 2 1 10 10 C 1.52995 * 109.07238 * 177.26861 * 9 7 2 11 11 N 1.46901 * 109.47475 * 306.27369 * 10 9 7 12 12 C 1.52578 * 109.07956 * 58.21500 * 9 7 2 13 13 C 1.53735 * 111.43561 * 184.73740 * 12 9 7 14 14 C 1.51632 * 107.31987 * 57.84634 * 13 12 9 15 15 H 1.09000 * 110.99898 * 56.00217 * 14 13 12 16 16 C 1.53271 * 115.81627 * 182.90132 * 14 13 12 17 17 C 1.55311 * 102.93763 * 157.12844 * 16 14 13 18 18 C 1.54906 * 106.37993 * 336.04738 * 17 16 14 19 19 C 1.52502 * 105.32838 * 356.54774 * 18 17 16 20 20 H 1.08998 * 109.78625 * 272.21757 * 19 18 17 21 21 C 1.51614 * 116.56235 * 146.65171 * 19 18 17 22 22 H 0.96998 * 120.00364 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47438 * 66.27679 * 10 9 7 24 24 H 1.09004 * 109.47338 * 186.27922 * 10 9 7 25 25 H 1.00894 * 111.00327 * 174.28117 * 11 10 9 26 26 H 1.00901 * 111.00089 * 298.24353 * 11 10 9 27 27 H 1.08994 * 109.07413 * 305.22600 * 12 9 7 28 28 H 1.09000 * 109.07262 * 64.25614 * 12 9 7 29 29 H 1.09001 * 109.89658 * 177.22027 * 13 12 9 30 30 H 1.09003 * 109.90441 * 298.34766 * 13 12 9 31 31 H 1.09004 * 110.72257 * 275.49147 * 16 14 13 32 32 H 1.08994 * 110.72041 * 38.76886 * 16 14 13 33 33 H 1.09005 * 110.07632 * 95.27746 * 17 16 14 34 34 H 1.08998 * 110.07919 * 216.75838 * 17 16 14 35 35 H 1.09003 * 110.27660 * 237.58343 * 18 17 16 36 36 H 1.09003 * 110.27745 * 115.51343 * 18 17 16 37 37 H 1.09011 * 109.89311 * 60.90020 * 21 19 18 38 38 H 1.08996 * 109.96217 * 299.82331 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0788 -1.1973 0.1119 9 6 1.2592 -2.4946 -0.1541 10 6 2.2654 -3.6466 -0.1876 11 7 3.2716 -3.3880 -1.2261 12 6 0.4832 -2.4716 -1.4676 13 6 -0.3912 -3.7262 -1.6257 14 6 -1.3261 -3.7780 -0.4330 15 1 -1.9076 -2.8596 -0.3524 16 6 -2.2464 -5.0013 -0.3590 17 6 -2.5961 -5.0825 1.1521 18 6 -1.4487 -4.3642 1.9052 19 6 -0.4419 -3.9739 0.8283 20 1 0.2585 -4.7927 0.6638 21 6 0.3214 -2.6828 1.0498 22 1 -0.4850 0.8400 -0.0004 23 1 2.7567 -3.7283 0.7820 24 1 1.7444 -4.5778 -0.4105 25 1 3.9995 -4.0864 -1.2064 26 1 2.8444 -3.3366 -2.1388 27 1 -0.1543 -1.5879 -1.4893 28 1 1.1886 -2.4222 -2.2972 29 1 -0.9704 -3.6610 -2.5467 30 1 0.2373 -4.6166 -1.6438 31 1 -3.1455 -4.8443 -0.9550 32 1 -1.7204 -5.8997 -0.6818 33 1 -3.5432 -4.5783 1.3446 34 1 -2.6567 -6.1243 1.4667 35 1 -0.9882 -5.0405 2.6255 36 1 -1.8264 -3.4747 2.4093 37 1 0.9053 -2.7500 1.9679 38 1 -0.3738 -1.8457 1.1130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:54 Heat of formation + Delta-G solvation = -39.550967 kcal Electronic energy + Delta-G solvation = -16774.029648 eV Core-core repulsion = 14421.201435 eV Total energy + Delta-G solvation = -2352.828214 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93710 -37.33512 -34.25826 -33.29205 -32.04468 -29.36410 -28.07234 -26.15863 -24.79089 -22.92624 -21.18282 -20.82872 -19.52315 -17.94554 -16.91001 -16.31325 -15.61420 -15.58566 -15.36343 -15.18332 -14.39818 -14.16255 -13.83396 -13.54195 -13.26796 -12.83344 -12.63850 -12.55394 -12.34514 -12.05295 -11.90442 -11.78620 -11.57002 -11.30699 -11.22339 -11.04922 -10.82062 -10.60886 -10.10418 -10.05948 -9.11207 -7.85432 -5.94177 1.40613 1.45259 1.55342 2.54460 3.33927 3.77410 3.95297 3.98099 4.11522 4.41406 4.53588 4.59619 4.69467 4.72691 4.80670 4.87778 4.91794 4.96806 5.05015 5.08130 5.10646 5.20088 5.27336 5.30041 5.41777 5.46039 5.47029 5.62394 5.73047 5.85352 5.92751 6.00254 6.29030 6.37606 6.63228 6.75785 6.94825 7.12669 7.68872 9.11838 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.010471 C = 0.009222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.435789 B = 2673.443464 C = 3035.492149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.484 4.484 8 H 0.044 0.956 9 C 0.074 3.926 10 C 0.084 3.916 11 N -0.845 5.845 12 C -0.099 4.099 13 C -0.100 4.100 14 C -0.085 4.085 15 H 0.046 0.954 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.092 4.092 20 H 0.062 0.938 21 C -0.087 4.087 22 H 0.251 0.749 23 H 0.039 0.961 24 H 0.022 0.978 25 H 0.335 0.665 26 H 0.337 0.663 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -10.716 -0.764 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.073 3.927 10 C -0.046 4.046 11 N -0.375 5.375 12 C -0.137 4.137 13 C -0.137 4.137 14 C -0.103 4.103 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.110 4.110 20 H 0.080 0.920 21 C -0.126 4.126 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.286 -9.898 -0.370 10.436 hybrid contribution 0.318 0.627 -0.278 0.756 sum -2.968 -9.271 -0.648 9.756 Atomic orbital electron populations 1.69979 1.06215 1.25584 1.52938 1.25458 0.95429 1.00912 0.96342 0.85914 0.79252 0.81908 0.76861 1.20224 1.21390 1.21627 1.21416 0.93101 0.91584 1.46175 0.93726 1.18142 0.91053 0.91916 0.91566 1.21811 0.92849 0.96266 0.93682 1.58512 1.15696 1.55224 1.08080 1.21449 0.97668 0.97346 0.97257 1.21376 0.97183 0.98158 0.97017 1.21675 0.95670 0.97589 0.95412 0.93558 1.22213 0.98879 0.97404 0.96465 1.22458 0.97644 1.00634 0.94583 1.21959 0.96500 0.99482 0.97698 1.21741 0.96365 0.97402 0.95527 0.91961 1.21303 0.98346 0.96253 0.96706 0.93983 0.94287 0.96045 0.85312 0.84940 0.92651 0.95456 0.93006 0.92327 0.91394 0.90947 0.91952 0.90401 0.91472 0.93517 0.96778 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 9.48 21.45 0.20 -50.77 16 2 C 0.02 0.86 5.08 84.65 0.43 1.29 16 3 Si 0.93 45.20 29.54 68.60 2.03 47.22 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.48 -26.33 7.46 25.60 0.19 -26.14 16 8 H 0.04 2.55 7.49 -2.91 -0.02 2.52 16 9 C 0.07 3.45 0.28 -52.82 -0.02 3.43 16 10 C 0.08 3.40 5.05 86.30 0.44 3.83 16 11 N -0.84 -31.46 8.76 -186.72 -1.64 -33.10 16 12 C -0.10 -4.46 4.29 30.70 0.13 -4.33 16 13 C -0.10 -3.63 5.38 30.39 0.16 -3.46 16 14 C -0.08 -3.03 2.36 -10.37 -0.02 -3.05 16 15 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 16 C -0.11 -3.07 6.45 31.48 0.20 -2.86 16 17 C -0.12 -2.99 6.87 32.04 0.22 -2.77 16 18 C -0.12 -3.72 6.50 31.08 0.20 -3.52 16 19 C -0.09 -3.38 2.14 -10.63 -0.02 -3.40 16 20 H 0.06 2.20 6.00 -2.39 -0.01 2.19 16 21 C -0.09 -4.04 4.22 30.39 0.13 -3.91 16 22 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 23 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 24 H 0.02 0.79 5.00 -2.38 -0.01 0.78 16 25 H 0.33 10.19 9.08 -89.70 -0.81 9.37 16 26 H 0.34 12.10 7.32 -89.69 -0.66 11.44 16 27 H 0.05 2.91 5.99 -2.39 -0.01 2.90 16 28 H 0.03 1.21 6.52 -2.39 -0.02 1.19 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.95 6.62 -2.39 -0.02 1.93 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.58 8.07 -2.39 -0.02 1.57 16 37 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.06 3.38 6.04 -2.39 -0.01 3.37 16 Total: -1.00 -58.22 274.83 2.22 -56.01 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.42 Total: 25.52 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 2.04 Total: -44.89 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.43 Total: -83.86 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -58.22 2.22 -56.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.459 kcal (2) G-P(sol) polarization free energy of solvation -58.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds