Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48500 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99886 * 3 2 1 6 6 H 1.48499 * 109.47237 * 59.99789 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99911 * 172.60555 * 7 2 1 9 9 C 1.50701 * 119.99878 * 352.60455 * 7 2 1 10 10 C 1.52998 * 109.68323 * 304.95097 * 9 7 2 11 11 N 1.46898 * 109.46929 * 303.85581 * 10 9 7 12 12 C 1.53258 * 109.68190 * 184.42362 * 9 7 2 13 13 C 1.52660 * 108.63450 * 303.53522 * 12 9 7 14 14 C 1.53028 * 110.78316 * 298.01631 * 13 12 9 15 15 H 1.09005 * 112.63795 * 287.97033 * 14 13 12 16 16 C 1.55735 * 106.58701 * 164.22058 * 14 13 12 17 17 C 1.54437 * 103.86135 * 283.39531 * 16 14 13 18 18 C 1.54222 * 106.47111 * 335.72570 * 17 16 14 19 19 C 1.53428 * 105.90720 * 359.63302 * 18 17 16 20 20 H 1.09004 * 108.05845 * 269.22459 * 19 18 17 21 21 C 1.51134 * 112.64881 * 148.78166 * 19 18 17 22 22 H 0.96998 * 120.00141 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47160 * 183.85493 * 10 9 7 24 24 H 1.09003 * 109.47034 * 63.85525 * 10 9 7 25 25 H 1.00896 * 111.00173 * 56.96563 * 11 10 9 26 26 H 1.00903 * 110.99945 * 180.91442 * 11 10 9 27 27 H 1.08995 * 109.60919 * 63.32085 * 12 9 7 28 28 H 1.08999 * 109.60793 * 183.83496 * 12 9 7 29 29 H 1.09004 * 109.21846 * 177.66807 * 13 12 9 30 30 H 1.08998 * 109.15365 * 58.32509 * 13 12 9 31 31 H 1.09001 * 110.54540 * 41.98487 * 16 14 13 32 32 H 1.08991 * 110.55094 * 164.79799 * 16 14 13 33 33 H 1.08999 * 110.06032 * 94.98056 * 17 16 14 34 34 H 1.09002 * 110.05778 * 216.41595 * 17 16 14 35 35 H 1.09002 * 110.16185 * 240.52258 * 18 17 16 36 36 H 1.08998 * 110.16244 * 118.74429 * 18 17 16 37 37 H 1.09004 * 109.11315 * 173.93635 * 21 19 18 38 38 H 1.08994 * 109.11657 * 54.88021 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1209 9 6 1.2605 -2.4938 0.1669 10 6 0.4259 -2.4484 1.4484 11 7 1.2994 -2.1502 2.5912 12 6 2.2588 -3.6542 0.2417 13 6 3.1281 -3.6315 -1.0131 14 6 2.2758 -3.8338 -2.2678 15 1 1.9111 -4.8562 -2.3670 16 6 3.1541 -3.3962 -3.4772 17 6 3.1161 -1.8532 -3.4229 18 6 1.8220 -1.4737 -2.6747 19 6 1.1362 -2.7999 -2.3213 20 1 0.4618 -3.0596 -3.1374 21 6 0.3451 -2.7216 -1.0360 22 1 -0.4850 0.8400 -0.0004 23 1 -0.0566 -3.4136 1.6021 24 1 -0.3342 -1.6722 1.3597 25 1 1.7963 -1.2835 2.4500 26 1 0.7738 -2.1295 3.4523 27 1 2.8872 -3.5397 1.1249 28 1 1.7181 -4.5991 0.2943 29 1 3.8694 -4.4282 -0.9505 30 1 3.6387 -2.6706 -1.0771 31 1 4.1754 -3.7581 -3.3590 32 1 2.7250 -3.7568 -4.4119 33 1 3.9845 -1.4767 -2.8825 34 1 3.0986 -1.4440 -4.4330 35 1 1.1766 -0.8770 -3.3194 36 1 2.0616 -0.9208 -1.7664 37 1 -0.2021 -3.6539 -0.8963 38 1 -0.3661 -1.8985 -1.1041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = -30.394965 kcal Electronic energy + Delta-G solvation = -17238.520319 eV Core-core repulsion = 14886.089140 eV Total energy + Delta-G solvation = -2352.431180 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02689 -37.06956 -34.01484 -33.21598 -31.84247 -29.51784 -27.79584 -26.92127 -24.19184 -23.16011 -20.87501 -20.69543 -19.47615 -17.38732 -17.08543 -16.41357 -15.84396 -15.38976 -15.05551 -14.81123 -14.64255 -14.16567 -13.60603 -13.25297 -13.11534 -12.81402 -12.52603 -12.43048 -12.21738 -12.17609 -11.85383 -11.74550 -11.54903 -11.22077 -11.13912 -11.07039 -10.48628 -10.40549 -10.20794 -9.89719 -9.06446 -7.88296 -5.84702 1.40524 1.49558 1.54714 2.49571 3.31149 3.95944 4.00872 4.12049 4.27942 4.57903 4.59163 4.74589 4.79011 4.89620 4.92287 5.00034 5.03628 5.12250 5.15403 5.23934 5.28538 5.35873 5.41405 5.49728 5.56889 5.61855 5.66974 5.68810 5.78938 5.91168 5.98205 6.06328 6.33632 6.37922 6.69950 6.78706 6.94443 7.15388 7.60344 9.07196 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.015768 C = 0.011775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.697740 B = 1775.330779 C = 2377.395584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.032 3.968 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.456 4.456 8 H 0.054 0.946 9 C 0.074 3.926 10 C 0.077 3.923 11 N -0.840 5.840 12 C -0.091 4.091 13 C -0.098 4.098 14 C -0.082 4.082 15 H 0.073 0.927 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.168 4.168 19 C -0.057 4.057 20 H 0.028 0.972 21 C -0.095 4.095 22 H 0.253 0.747 23 H 0.023 0.977 24 H 0.032 0.968 25 H 0.339 0.661 26 H 0.323 0.677 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.014 0.986 36 H 0.133 0.867 37 H 0.013 0.987 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -4.551 -2.659 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.167 4.167 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.055 4.055 11 N -0.368 5.368 12 C -0.129 4.129 13 C -0.136 4.136 14 C -0.100 4.100 15 H 0.092 0.908 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.204 4.204 19 C -0.075 4.075 20 H 0.047 0.953 21 C -0.133 4.133 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.152 0.848 26 H 0.133 0.867 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.150 0.850 37 H 0.032 0.968 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.116 -5.093 -2.875 7.152 hybrid contribution -0.704 2.084 0.008 2.199 sum 3.412 -3.010 -2.868 5.378 Atomic orbital electron populations 1.69968 1.06355 1.25769 1.51781 1.25263 0.95077 1.00035 0.96351 0.86223 0.80075 0.82790 0.76912 1.19151 1.22056 1.21427 1.20906 0.93076 0.90587 1.44854 0.92836 1.18116 0.91836 0.92845 0.89907 1.21627 0.95094 0.96594 0.92138 1.58810 1.32085 1.41919 1.03953 1.21358 0.97864 0.96818 0.96842 1.21410 0.97287 1.00824 0.94040 1.22051 0.95272 0.97452 0.95221 0.90831 1.22581 0.99686 0.95070 0.97667 1.22151 0.98044 0.96370 0.98957 1.23151 0.95080 0.98678 1.03466 1.20838 0.95607 0.95352 0.95752 0.95331 1.20949 0.98566 0.97783 0.96005 0.93755 0.95809 0.95030 0.84763 0.86693 0.93166 0.95079 0.92957 0.92294 0.91079 0.91717 0.93040 0.92794 0.96709 0.85037 0.96795 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.29 9.51 21.45 0.20 -46.09 16 2 C 0.03 1.54 3.96 84.65 0.34 1.87 16 3 Si 0.91 40.39 29.37 68.60 2.01 42.40 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.46 -21.41 2.87 25.60 0.07 -21.34 16 8 H 0.05 2.60 6.25 -2.91 -0.02 2.58 16 9 C 0.07 3.27 0.33 -52.89 -0.02 3.25 16 10 C 0.08 3.43 5.44 86.30 0.47 3.90 16 11 N -0.84 -33.96 8.98 -186.73 -1.68 -35.64 16 12 C -0.09 -3.68 4.70 30.57 0.14 -3.54 16 13 C -0.10 -3.58 4.63 30.49 0.14 -3.44 16 14 C -0.08 -2.85 3.59 -9.52 -0.03 -2.89 16 15 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 16 C -0.11 -3.46 6.21 32.03 0.20 -3.26 16 17 C -0.12 -4.10 6.11 31.50 0.19 -3.91 16 18 C -0.17 -7.07 5.65 31.15 0.18 -6.89 16 19 C -0.06 -2.32 2.65 -10.94 -0.03 -2.35 16 20 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 21 C -0.09 -4.27 4.23 29.94 0.13 -4.15 16 22 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.03 1.58 6.12 -2.39 -0.01 1.57 16 25 H 0.34 14.53 7.69 -89.70 -0.69 13.84 16 26 H 0.32 11.51 9.08 -89.69 -0.81 10.69 16 27 H 0.05 2.09 7.68 -2.39 -0.02 2.07 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 2.33 4.67 -2.39 -0.01 2.32 16 31 H 0.07 1.94 8.00 -2.39 -0.02 1.92 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.79 7.76 -2.39 -0.02 1.78 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 6.17 2.54 -3.60 -0.01 6.16 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 2.91 6.22 -2.39 -0.01 2.89 16 Total: -1.00 -49.66 267.14 1.87 -47.79 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.45 Total: 34.27 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 1.78 Total: -42.74 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.47 Total: -81.72 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.01 Total: 42.40 kcal Total: -49.66 1.87 -47.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.396 kcal (2) G-P(sol) polarization free energy of solvation -49.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds