Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99698 * 2 1 4 4 H 1.48498 * 109.47124 * 264.71332 * 3 2 1 5 5 H 1.48502 * 109.47249 * 24.71910 * 3 2 1 6 6 H 1.48503 * 109.46804 * 144.71488 * 3 2 1 7 7 C 1.37877 * 119.99966 * 179.72482 * 2 1 3 8 8 H 1.07995 * 119.99633 * 186.63025 * 7 2 1 9 9 C 1.50703 * 119.99992 * 6.63372 * 7 2 1 10 10 H 1.08999 * 110.01349 * 303.85620 * 9 7 2 11 11 C 1.54262 * 110.03221 * 65.24900 * 9 7 2 12 12 C 1.54889 * 104.19795 * 142.89407 * 11 9 7 13 13 C 1.54893 * 102.74722 * 322.05668 * 12 11 9 14 14 H 1.09000 * 110.48441 * 279.13003 * 13 12 11 15 15 N 1.46899 * 110.48451 * 156.62002 * 13 12 11 16 16 C 1.46852 * 110.99787 * 185.66681 * 15 13 12 17 17 C 1.53033 * 109.52486 * 174.16424 * 16 15 13 18 18 C 1.53117 * 109.28127 * 59.17162 * 17 16 15 19 19 C 1.53121 * 109.16359 * 302.34988 * 18 17 16 20 20 C 1.46843 * 111.00207 * 61.45425 * 15 13 12 21 21 C 1.53873 * 110.02823 * 182.41475 * 9 7 2 22 22 H 0.96996 * 120.00140 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.48896 * 261.57513 * 11 9 7 24 24 H 1.09002 * 110.48993 * 24.08183 * 11 9 7 25 25 H 1.08999 * 110.75607 * 80.36810 * 12 11 9 26 26 H 1.09003 * 110.76011 * 203.74020 * 12 11 9 27 27 H 1.09005 * 109.45788 * 294.17406 * 16 15 13 28 28 H 1.08996 * 109.46584 * 54.13659 * 16 15 13 29 29 H 1.09000 * 109.49680 * 299.23152 * 17 16 15 30 30 H 1.09003 * 109.53592 * 179.13974 * 17 16 15 31 31 H 1.08995 * 109.52351 * 182.44040 * 18 17 16 32 32 H 1.09006 * 109.57254 * 62.28888 * 18 17 16 33 33 H 1.09003 * 109.49894 * 297.71391 * 19 18 17 34 34 H 1.08996 * 109.53652 * 177.61621 * 19 18 17 35 35 H 1.08994 * 109.46201 * 305.85393 * 20 15 13 36 36 H 1.09006 * 109.46069 * 65.83071 * 20 15 13 37 37 H 1.08994 * 110.03645 * 0.02562 * 21 9 7 38 38 H 1.09004 * 110.03344 * 121.43402 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6083 1.9820 -1.3941 5 1 1.3952 2.6823 0.5855 6 1 3.4864 1.4750 0.8088 7 6 2.0046 -1.1940 0.0057 8 1 3.0791 -1.1966 0.1137 9 6 1.2586 -2.4955 -0.1388 10 1 0.4964 -2.5766 0.6361 11 6 0.6050 -2.5779 -1.5337 12 6 0.7461 -4.0680 -1.9319 13 6 2.1458 -4.4379 -1.3813 14 1 2.9255 -4.1042 -2.0661 15 7 2.2443 -5.8865 -1.1586 16 6 3.5161 -6.2342 -0.5119 17 6 3.5225 -7.7246 -0.1645 18 6 3.3391 -8.5432 -1.4454 19 6 2.0313 -8.1275 -2.1247 20 6 2.0681 -6.6254 -2.4153 21 6 2.2384 -3.6780 -0.0419 22 1 -0.4850 0.8400 0.0004 23 1 -0.4464 -2.2953 -1.4796 24 1 1.1345 -1.9400 -2.2414 25 1 -0.0277 -4.6701 -1.4557 26 1 0.7144 -4.1830 -3.0154 27 1 4.3403 -6.0161 -1.1910 28 1 3.6322 -5.6482 0.3997 29 1 2.7069 -7.9408 0.5255 30 1 4.4725 -7.9861 0.3017 31 1 3.2997 -9.6038 -1.1974 32 1 4.1750 -8.3577 -2.1201 33 1 1.1922 -8.3501 -1.4655 34 1 1.9155 -8.6763 -3.0592 35 1 1.1326 -6.3235 -2.8860 36 1 2.8993 -6.4056 -3.0854 37 1 3.2532 -3.3107 0.1101 38 1 1.9517 -4.3341 0.7800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -25.200493 kcal Electronic energy + Delta-G solvation = -15924.910757 eV Core-core repulsion = 13572.704826 eV Total energy + Delta-G solvation = -2352.205931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.08374 -36.46746 -33.04805 -31.52667 -30.79919 -28.02668 -26.75477 -24.20014 -22.99160 -22.57738 -19.63695 -19.29346 -18.61067 -16.45989 -16.03275 -14.57301 -14.51742 -14.34082 -14.14325 -13.62712 -13.24398 -13.16359 -12.40268 -12.29297 -12.02659 -11.73244 -11.08375 -11.06409 -10.77433 -10.68163 -10.65460 -10.47633 -10.35043 -9.97007 -9.78574 -9.75527 -9.49267 -9.09388 -8.68767 -8.29313 -7.88955 -5.95294 -3.96141 3.33942 3.40345 3.42936 4.25681 4.49087 4.91671 4.96364 5.01484 5.30661 5.37659 5.51249 5.66197 5.68169 5.70310 5.72581 5.87108 5.95615 5.98738 6.05311 6.12154 6.20234 6.25159 6.41342 6.46534 6.62379 6.68840 6.77212 6.90908 7.09962 7.27871 7.38157 7.53395 7.67297 7.79325 7.95358 8.10000 8.54626 9.07153 9.66574 11.14795 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055184 B = 0.006207 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.273792 B = 4509.966480 C = 4777.355779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.046 3.954 10 H 0.032 0.968 11 C -0.096 4.096 12 C -0.117 4.117 13 C 0.081 3.919 14 H 0.036 0.964 15 N -0.531 5.531 16 C 0.054 3.946 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.116 4.116 20 C 0.054 3.946 21 C -0.104 4.104 22 H 0.259 0.741 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.049 0.951 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -13.866 -3.690 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.027 3.973 10 H 0.050 0.950 11 C -0.134 4.134 12 C -0.155 4.155 13 C -0.027 4.027 14 H 0.054 0.946 15 N -0.256 5.256 16 C -0.074 4.074 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.074 4.074 21 C -0.142 4.142 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.054 -13.873 -3.365 14.840 hybrid contribution 1.157 1.250 -0.656 1.825 sum 5.211 -12.623 -4.021 14.236 Atomic orbital electron populations 1.69976 1.05870 1.26361 1.50592 1.24980 0.94777 0.98910 0.95264 0.86719 0.79895 0.83857 0.78162 1.20715 1.21363 1.20063 1.21293 0.93144 0.90833 1.49791 0.92861 1.19205 0.93293 0.91474 0.93333 0.94996 1.22297 1.00624 0.91164 0.99360 1.22624 0.95663 0.99358 0.97864 1.22586 0.97169 0.84742 0.98158 0.94637 1.62097 1.33088 1.06960 1.23418 1.22063 0.90144 0.95891 0.99342 1.21584 1.01548 0.94747 0.97512 1.21568 0.97735 0.99177 0.97281 1.21583 0.98136 0.95460 1.00203 1.22055 1.00683 0.93547 0.91116 1.22327 1.00495 0.97109 0.94260 0.93145 0.92699 0.93170 0.91764 0.93920 0.95672 0.90295 0.91198 0.92072 0.92309 0.92644 0.91211 0.92146 0.90670 0.95718 0.93220 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 12.89 55.43 0.71 -25.32 16 2 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.27 8.33 -34.44 -0.29 -14.55 16 8 H 0.05 1.47 7.34 -52.49 -0.39 1.08 16 9 C 0.05 1.16 2.73 -90.66 -0.25 0.91 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.10 -2.26 5.73 -25.07 -0.14 -2.41 16 12 C -0.12 -2.27 5.29 -24.74 -0.13 -2.40 16 13 C 0.08 1.53 2.58 -66.05 -0.17 1.36 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 N -0.53 -8.62 4.48 -224.70 -1.01 -9.63 16 16 C 0.05 0.78 5.26 -3.83 -0.02 0.76 16 17 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 18 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 19 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 20 C 0.05 0.76 5.30 -3.84 -0.02 0.74 16 21 C -0.10 -2.22 4.82 -25.61 -0.12 -2.34 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.04 0.75 7.81 -51.93 -0.41 0.34 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 1.21 6.71 -51.93 -0.35 0.86 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.06 6.78 -51.93 -0.35 0.71 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.07 7.37 -51.93 -0.38 0.69 16 38 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -28.41 289.28 -9.56 -37.97 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.89 Total: -3.13 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.72 Total: -20.79 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.29 Total: -34.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.41 -9.56 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.770 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds