Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99698 * 2 1 4 4 H 1.48498 * 109.47124 * 264.71332 * 3 2 1 5 5 H 1.48502 * 109.47249 * 24.71910 * 3 2 1 6 6 H 1.48503 * 109.46804 * 144.71488 * 3 2 1 7 7 C 1.37877 * 119.99966 * 179.72482 * 2 1 3 8 8 H 1.07995 * 119.99633 * 186.63025 * 7 2 1 9 9 C 1.50703 * 119.99992 * 6.63372 * 7 2 1 10 10 H 1.08999 * 110.01349 * 303.85620 * 9 7 2 11 11 C 1.54262 * 110.03221 * 65.24900 * 9 7 2 12 12 C 1.54889 * 104.19795 * 142.89407 * 11 9 7 13 13 C 1.54893 * 102.74722 * 322.05668 * 12 11 9 14 14 H 1.09000 * 110.48441 * 279.13003 * 13 12 11 15 15 N 1.46899 * 110.48451 * 156.62002 * 13 12 11 16 16 C 1.46852 * 110.99787 * 185.66681 * 15 13 12 17 17 C 1.53033 * 109.52486 * 174.16424 * 16 15 13 18 18 C 1.53117 * 109.28127 * 59.17162 * 17 16 15 19 19 C 1.53121 * 109.16359 * 302.34988 * 18 17 16 20 20 C 1.46843 * 111.00207 * 61.45425 * 15 13 12 21 21 C 1.53873 * 110.02823 * 182.41475 * 9 7 2 22 22 H 0.96996 * 120.00140 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.48896 * 261.57513 * 11 9 7 24 24 H 1.09002 * 110.48993 * 24.08183 * 11 9 7 25 25 H 1.08999 * 110.75607 * 80.36810 * 12 11 9 26 26 H 1.09003 * 110.76011 * 203.74020 * 12 11 9 27 27 H 1.09005 * 109.45788 * 294.17406 * 16 15 13 28 28 H 1.08996 * 109.46584 * 54.13659 * 16 15 13 29 29 H 1.09000 * 109.49680 * 299.23152 * 17 16 15 30 30 H 1.09003 * 109.53592 * 179.13974 * 17 16 15 31 31 H 1.08995 * 109.52351 * 182.44040 * 18 17 16 32 32 H 1.09006 * 109.57254 * 62.28888 * 18 17 16 33 33 H 1.09003 * 109.49894 * 297.71391 * 19 18 17 34 34 H 1.08996 * 109.53652 * 177.61621 * 19 18 17 35 35 H 1.08994 * 109.46201 * 305.85393 * 20 15 13 36 36 H 1.09006 * 109.46069 * 65.83071 * 20 15 13 37 37 H 1.08994 * 110.03645 * 0.02562 * 21 9 7 38 38 H 1.09004 * 110.03344 * 121.43402 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6083 1.9820 -1.3941 5 1 1.3952 2.6823 0.5855 6 1 3.4864 1.4750 0.8088 7 6 2.0046 -1.1940 0.0057 8 1 3.0791 -1.1966 0.1137 9 6 1.2586 -2.4955 -0.1388 10 1 0.4964 -2.5766 0.6361 11 6 0.6050 -2.5779 -1.5337 12 6 0.7461 -4.0680 -1.9319 13 6 2.1458 -4.4379 -1.3813 14 1 2.9255 -4.1042 -2.0661 15 7 2.2443 -5.8865 -1.1586 16 6 3.5161 -6.2342 -0.5119 17 6 3.5225 -7.7246 -0.1645 18 6 3.3391 -8.5432 -1.4454 19 6 2.0313 -8.1275 -2.1247 20 6 2.0681 -6.6254 -2.4153 21 6 2.2384 -3.6780 -0.0419 22 1 -0.4850 0.8400 0.0004 23 1 -0.4464 -2.2953 -1.4796 24 1 1.1345 -1.9400 -2.2414 25 1 -0.0277 -4.6701 -1.4557 26 1 0.7144 -4.1830 -3.0154 27 1 4.3403 -6.0161 -1.1910 28 1 3.6322 -5.6482 0.3997 29 1 2.7069 -7.9408 0.5255 30 1 4.4725 -7.9861 0.3017 31 1 3.2997 -9.6038 -1.1974 32 1 4.1750 -8.3577 -2.1201 33 1 1.1922 -8.3501 -1.4655 34 1 1.9155 -8.6763 -3.0592 35 1 1.1326 -6.3235 -2.8860 36 1 2.8993 -6.4056 -3.0854 37 1 3.2532 -3.3107 0.1101 38 1 1.9517 -4.3341 0.7800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = -41.063890 kcal Electronic energy + Delta-G solvation = -15925.598645 eV Core-core repulsion = 13572.704826 eV Total energy + Delta-G solvation = -2352.893819 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40068 -38.01160 -34.80299 -33.14168 -31.87496 -29.83712 -28.42705 -25.99502 -24.27210 -23.79144 -21.00029 -20.64359 -20.37833 -18.52630 -17.39887 -16.50732 -15.90428 -15.63974 -15.34349 -14.96359 -14.61066 -14.33095 -14.08994 -13.88808 -13.56390 -13.06353 -13.03656 -12.62078 -12.43607 -12.11465 -12.02516 -11.84992 -11.73437 -11.50068 -11.41796 -11.10608 -11.07411 -10.99629 -10.75834 -10.45499 -9.17916 -8.12201 -6.20437 1.40374 1.40912 1.50559 2.43494 2.99994 3.18394 3.85231 3.94705 4.02663 4.10099 4.12847 4.37036 4.39848 4.52902 4.61418 4.70256 4.76512 4.82534 4.91662 4.96286 4.96511 5.02103 5.09809 5.12063 5.20874 5.22642 5.26930 5.37900 5.42542 5.48048 5.56494 5.65282 5.90872 5.96866 6.26773 6.33545 6.42777 6.91193 7.46018 8.97637 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055184 B = 0.006207 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.273792 B = 4509.966480 C = 4777.355779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.089 4.089 12 C -0.102 4.102 13 C 0.092 3.908 14 H 0.032 0.968 15 N -0.537 5.537 16 C 0.050 3.950 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.112 4.112 20 C 0.050 3.950 21 C -0.092 4.092 22 H 0.260 0.740 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.043 0.957 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 -15.292 -4.508 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.018 3.982 10 H 0.013 0.987 11 C -0.128 4.128 12 C -0.140 4.140 13 C -0.016 4.016 14 H 0.049 0.951 15 N -0.262 5.262 16 C -0.078 4.078 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.077 4.077 21 C -0.130 4.130 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.229 -15.318 -4.184 16.718 hybrid contribution 0.781 1.681 -0.367 1.890 sum 6.011 -13.637 -4.551 15.582 Atomic orbital electron populations 1.70103 1.07330 1.27228 1.51379 1.25768 0.95602 1.02418 0.94874 0.85677 0.78713 0.79479 0.78454 1.19951 1.20950 1.19304 1.21640 0.93264 0.92226 1.49807 0.93067 1.19211 0.93261 0.92522 0.93165 0.98698 1.22088 0.98568 0.94064 0.98037 1.22471 0.96177 0.95917 0.99403 1.22310 0.96509 0.86680 0.96076 0.95057 1.62066 1.34240 1.05043 1.24879 1.22140 0.89323 0.97769 0.98542 1.21569 1.02342 0.92763 0.98272 1.21573 0.97367 1.00072 0.96492 1.21577 0.98450 0.93628 1.01311 1.22173 1.00613 0.94984 0.89966 1.22116 0.98830 0.95929 0.96153 0.93089 0.94982 0.94791 0.91443 0.91509 0.95605 0.91695 0.91763 0.90307 0.90289 0.92202 0.91703 0.89997 0.90857 0.95525 0.93780 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 12.89 21.45 0.28 -54.95 16 2 C 0.01 0.68 5.29 84.65 0.45 1.13 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.53 -30.24 8.33 25.60 0.21 -30.03 16 8 H 0.05 2.86 7.34 -2.91 -0.02 2.84 16 9 C 0.04 1.95 2.73 -10.82 -0.03 1.92 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.09 -4.30 5.73 31.67 0.18 -4.12 16 12 C -0.10 -3.88 5.29 31.89 0.17 -3.71 16 13 C 0.09 3.42 2.58 45.99 0.12 3.54 16 14 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 15 N -0.54 -16.62 4.48 -864.83 -3.88 -20.49 16 16 C 0.05 1.38 5.26 86.32 0.45 1.84 16 17 C -0.11 -2.38 6.09 30.64 0.19 -2.20 16 18 C -0.12 -2.14 6.00 30.67 0.18 -1.96 16 19 C -0.11 -2.24 6.09 30.65 0.19 -2.05 16 20 C 0.05 1.29 5.30 86.33 0.46 1.75 16 21 C -0.09 -3.99 4.82 31.32 0.15 -3.84 16 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 23 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.03 1.71 7.85 -2.39 -0.02 1.69 16 25 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.07 2.23 7.81 -2.39 -0.02 2.22 16 27 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 1.95 6.71 -2.39 -0.02 1.93 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.89 6.78 -2.39 -0.02 1.88 16 36 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.04 1.92 7.37 -2.39 -0.02 1.90 16 38 H 0.05 2.25 7.67 -2.38 -0.02 2.24 16 Total: -1.00 -61.52 289.28 2.14 -59.38 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.99 Total: 7.19 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 2.72 Total: -37.72 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.60 Total: -75.44 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.52 2.14 -59.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.314 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds