Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46843 * 299.99454 * 3 2 1 6 6 H 1.48498 * 109.47120 * 59.99613 * 3 2 1 7 7 C 1.37883 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.01641 * 59.93806 * 9 7 2 11 11 C 1.53869 * 110.03024 * 298.53861 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.71754 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46892 * 110.75562 * 156.31936 * 13 12 11 16 16 C 1.46851 * 111.00214 * 185.66671 * 15 13 12 17 17 C 1.53035 * 109.52292 * 174.16368 * 16 15 13 18 18 C 1.53116 * 109.28016 * 59.17917 * 17 16 15 19 19 C 1.53111 * 109.16099 * 302.34338 * 18 17 16 20 20 C 1.46845 * 111.00037 * 61.45809 * 15 13 12 21 21 C 1.54266 * 110.02909 * 181.37581 * 9 7 2 22 22 H 0.96998 * 120.00289 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.02983 * 121.43506 * 11 9 7 24 24 H 1.08996 * 110.07773 * 0.02649 * 11 9 7 25 25 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 26 26 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 27 27 H 1.08994 * 109.45984 * 294.18196 * 16 15 13 28 28 H 1.09002 * 109.45801 * 54.14384 * 16 15 13 29 29 H 1.08998 * 109.50718 * 299.23460 * 17 16 15 30 30 H 1.09001 * 109.53199 * 179.14098 * 17 16 15 31 31 H 1.08998 * 109.52259 * 182.43714 * 18 17 16 32 32 H 1.09001 * 109.57379 * 62.28060 * 18 17 16 33 33 H 1.09004 * 109.50730 * 297.71157 * 19 18 17 34 34 H 1.09007 * 109.53516 * 177.61680 * 19 18 17 35 35 H 1.09003 * 109.46104 * 305.85707 * 20 15 13 36 36 H 1.08997 * 109.46245 * 65.83144 * 20 15 13 37 37 H 1.09005 * 110.48526 * 261.57452 * 21 9 7 38 38 H 1.09007 * 110.48724 * 24.07936 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8860 11 6 0.3888 -2.6100 1.2702 12 6 0.8854 -3.8555 2.0329 13 6 1.5477 -4.7336 0.9422 14 1 0.7945 -5.2886 0.3830 15 7 2.5343 -5.6455 1.5361 16 6 3.2608 -6.3849 0.4958 17 6 4.3746 -7.2130 1.1404 18 6 3.7610 -8.1865 2.1504 19 6 2.9700 -7.3945 3.1950 20 6 1.8968 -6.5610 2.4910 21 6 2.2415 -3.6813 0.0360 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6601 -2.7314 0.9998 24 1 0.5145 -1.7199 1.8867 25 1 1.6161 -3.5727 2.7906 26 1 0.0477 -4.3822 2.4899 27 1 2.5714 -7.0477 -0.0270 28 1 3.6956 -5.6807 -0.2135 29 1 5.0720 -6.5496 1.6518 30 1 4.9042 -7.7737 0.3701 31 1 4.5545 -8.7483 2.6433 32 1 3.0934 -8.8761 1.6338 33 1 3.6452 -6.7338 3.7389 34 1 2.4954 -8.0843 3.8930 35 1 1.3410 -5.9848 3.2308 36 1 1.2140 -7.2232 1.9588 37 1 2.3932 -4.0821 -0.9663 38 1 3.1920 -3.3696 0.4691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = -25.411136 kcal Electronic energy + Delta-G solvation = -15935.415805 eV Core-core repulsion = 13583.200740 eV Total energy + Delta-G solvation = -2352.215065 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04726 -36.47014 -33.06758 -31.49800 -30.78250 -27.98999 -26.75225 -24.20370 -22.99881 -22.57849 -19.63918 -19.24681 -18.68695 -16.40374 -15.62299 -14.85193 -14.54072 -14.40432 -14.18707 -13.57209 -13.28252 -13.20447 -12.44125 -12.26001 -11.99396 -11.59495 -11.08244 -10.98756 -10.79865 -10.72194 -10.54545 -10.49615 -10.37875 -9.94899 -9.78890 -9.76692 -9.48642 -9.08190 -8.59986 -8.29286 -7.89066 -5.93701 -3.95939 3.34044 3.42021 3.46484 4.25337 4.50709 4.92075 4.96527 5.01747 5.30785 5.39088 5.50531 5.66516 5.68527 5.70150 5.72687 5.87485 5.96195 5.98629 6.03171 6.12910 6.20863 6.24898 6.39766 6.47014 6.62352 6.68144 6.87005 6.89608 7.10886 7.28846 7.43814 7.55286 7.68122 7.81945 8.01495 8.07941 8.56550 9.07810 9.67436 11.15742 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049436 B = 0.006322 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.250804 B = 4427.576898 C = 4657.686673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.023 0.977 11 C -0.090 4.090 12 C -0.113 4.113 13 C 0.075 3.925 14 H 0.035 0.965 15 N -0.528 5.528 16 C 0.055 3.945 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.116 4.116 20 C 0.054 3.946 21 C -0.101 4.101 22 H 0.258 0.742 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -13.708 3.998 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.026 3.974 10 H 0.042 0.958 11 C -0.128 4.128 12 C -0.151 4.151 13 C -0.032 4.032 14 H 0.053 0.947 15 N -0.253 5.253 16 C -0.073 4.073 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.074 4.074 21 C -0.139 4.139 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.751 -13.301 4.251 14.750 hybrid contribution -0.276 0.443 -0.462 0.697 sum 4.475 -12.859 3.789 14.132 Atomic orbital electron populations 1.69998 1.05853 1.26174 1.50995 1.24985 0.94815 0.98962 0.95439 0.86612 0.80247 0.84146 0.77457 1.19805 1.21178 1.21134 1.21308 0.92780 0.90462 1.49965 0.92655 1.19219 0.92424 0.91863 0.93884 0.95841 1.22006 0.97742 0.94824 0.98266 1.22459 0.98148 0.97071 0.97438 1.22811 0.91970 0.92505 0.95955 0.94711 1.62023 1.28116 1.18662 1.16507 1.22056 0.95479 0.96020 0.93783 1.21585 0.97946 0.97595 0.98285 1.21564 0.99266 0.97659 0.97251 1.21584 0.98095 0.98189 0.97533 1.22058 0.95330 0.94157 0.95831 1.22564 1.00237 0.95266 0.95838 0.93261 0.94626 0.91683 0.91733 0.94211 0.95743 0.90345 0.91144 0.92081 0.92303 0.92665 0.91171 0.92144 0.90646 0.95766 0.94357 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 12.33 55.43 0.68 -25.35 16 2 C 0.06 1.66 5.07 -17.82 -0.09 1.57 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.14 8.34 -34.44 -0.29 -14.43 16 8 H 0.06 1.54 7.55 -52.49 -0.40 1.14 16 9 C 0.04 1.14 2.85 -90.65 -0.26 0.88 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 11 C -0.09 -2.15 5.55 -25.62 -0.14 -2.29 16 12 C -0.11 -2.24 5.23 -25.07 -0.13 -2.37 16 13 C 0.08 1.41 2.60 -65.53 -0.17 1.24 16 14 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 15 N -0.53 -8.63 4.55 -224.09 -1.02 -9.65 16 16 C 0.05 0.79 5.31 -3.83 -0.02 0.77 16 17 C -0.12 -1.39 6.09 -26.65 -0.16 -1.56 16 18 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 19 C -0.12 -1.36 6.09 -26.65 -0.16 -1.52 16 20 C 0.05 0.77 5.31 -3.83 -0.02 0.75 16 21 C -0.10 -2.16 4.76 -24.88 -0.12 -2.28 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.72 7.17 -51.93 -0.37 1.35 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 1.20 6.80 -51.93 -0.35 0.84 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.08 1.08 6.80 -51.93 -0.35 0.73 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.77 7.84 -51.93 -0.41 0.36 16 38 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -28.45 288.61 -9.63 -38.08 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.89 Total: -3.32 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.72 Total: -20.70 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.34 Total: -35.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.45 -9.63 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.667 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds