Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48500 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47334 * 300.00084 * 3 2 1 6 6 H 1.48498 * 109.47300 * 60.00064 * 3 2 1 7 7 C 1.37878 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.04488 * 61.01062 * 9 7 2 11 11 C 1.54513 * 109.05534 * 302.08970 * 9 7 2 12 12 C 1.50461 * 108.84951 * 162.26409 * 11 9 7 13 13 C 1.54291 * 113.03653 * 92.15731 * 12 11 9 14 14 C 1.54072 * 112.28275 * 318.29415 * 13 12 11 15 15 N 1.44267 * 111.98412 * 318.91554 * 14 13 12 16 16 C 1.46901 * 111.00045 * 219.30752 * 15 14 13 17 17 C 1.53000 * 109.46769 * 48.02376 * 16 15 14 18 18 C 1.53003 * 117.49371 * 243.61836 * 17 16 15 19 19 C 1.53001 * 117.49608 * 174.99911 * 17 16 15 20 20 C 1.45856 * 109.05832 * 179.97438 * 9 7 2 21 21 H 0.97006 * 120.00222 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.56877 * 282.07271 * 11 9 7 23 23 H 1.08997 * 109.57055 * 42.32062 * 11 9 7 24 24 H 1.09007 * 108.76447 * 213.07142 * 12 11 9 25 25 H 1.08998 * 108.77469 * 331.22925 * 12 11 9 26 26 H 1.08994 * 108.92220 * 79.02053 * 13 12 11 27 27 H 1.09006 * 108.91760 * 197.57543 * 13 12 11 28 28 H 1.09000 * 108.97537 * 198.26988 * 14 13 12 29 29 H 1.09001 * 108.97693 * 79.56844 * 14 13 12 30 30 H 1.09002 * 109.47401 * 288.02083 * 16 15 14 31 31 H 1.09001 * 109.46874 * 168.02096 * 16 15 14 32 32 H 1.08995 * 115.55630 * 29.32522 * 17 16 15 33 33 H 1.08998 * 117.50656 * 0.02562 * 18 17 16 34 34 H 1.09001 * 117.49674 * 145.02590 * 18 17 16 35 35 H 1.09003 * 117.49710 * 214.97494 * 19 17 16 36 36 H 1.09000 * 117.50278 * 359.97438 * 19 17 16 37 37 H 1.08998 * 108.79602 * 60.98580 * 20 9 7 38 38 H 1.08998 * 108.79545 * 302.75735 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6403 -2.5573 -0.9016 11 6 0.3273 -2.5484 1.2371 12 6 -0.7190 -3.6078 1.0210 13 6 -0.3075 -4.9858 1.5800 14 6 1.1685 -5.3175 1.2880 15 7 1.5561 -4.9274 -0.0457 16 6 2.4442 -5.9293 -0.6501 17 6 1.8466 -7.3242 -0.4553 18 6 2.6364 -8.3181 0.3987 19 6 2.5663 -8.5001 -1.1188 20 6 2.2068 -3.6009 -0.0018 21 1 -0.4851 0.8401 -0.0004 22 1 0.9155 -2.7911 2.1222 23 1 -0.1535 -1.5796 1.3726 24 1 -1.6422 -3.2933 1.5078 25 1 -0.9047 -3.7044 -0.0487 26 1 -0.4642 -4.9908 2.6586 27 1 -0.9379 -5.7525 1.1294 28 1 1.3196 -6.3910 1.4014 29 1 1.7984 -4.7946 2.0077 30 1 3.4227 -5.8832 -0.1720 31 1 2.5504 -5.7251 -1.7155 32 1 0.7588 -7.3662 -0.4003 33 1 3.5816 -7.9782 0.8221 34 1 2.0682 -9.0142 1.0158 35 1 1.9520 -9.3158 -1.5001 36 1 3.4653 -8.2799 -1.6945 37 1 2.8156 -3.5386 0.9001 38 1 2.8580 -3.4999 -0.8700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259895961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = 5.474564 kcal Electronic energy + Delta-G solvation = -16046.010853 eV Core-core repulsion = 13695.135093 eV Total energy + Delta-G solvation = -2350.875760 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41303 -38.09697 -35.55093 -34.23874 -32.63792 -28.83540 -27.39789 -25.56961 -24.60088 -23.19470 -21.41391 -21.10872 -20.05134 -18.52248 -17.21952 -16.63450 -16.16625 -15.71124 -15.49192 -15.14807 -14.53505 -14.47070 -14.00192 -13.85317 -13.15878 -12.93126 -12.86516 -12.64894 -12.35494 -12.29967 -12.20949 -12.01196 -11.59079 -11.40008 -11.31404 -11.03646 -10.94260 -10.72224 -10.53364 -10.30683 -9.06533 -8.04947 -6.21259 1.40472 1.42038 1.53245 2.43077 2.89322 3.14346 3.20200 3.85227 4.04513 4.07363 4.19606 4.23316 4.35827 4.47267 4.55716 4.63682 4.66235 4.79230 4.81798 4.86389 4.94174 5.04669 5.07995 5.12322 5.20731 5.25901 5.29927 5.37814 5.53116 5.58677 5.70519 5.80190 5.98652 6.20141 6.32815 6.44992 6.54425 6.93035 7.46880 8.98141 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042268 B = 0.007009 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.277907 B = 3994.069629 C = 4435.386677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.008 1.008 11 C -0.099 4.099 12 C -0.095 4.095 13 C -0.100 4.100 14 C 0.056 3.944 15 N -0.539 5.539 16 C 0.087 3.913 17 C -0.161 4.161 18 C -0.178 4.178 19 C -0.166 4.166 20 C 0.091 3.909 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.017 0.983 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -14.496 1.602 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.032 3.968 10 H 0.011 0.989 11 C -0.137 4.137 12 C -0.133 4.133 13 C -0.138 4.138 14 C -0.073 4.073 15 N -0.262 5.262 16 C -0.040 4.040 17 C -0.179 4.179 18 C -0.215 4.215 19 C -0.204 4.204 20 C -0.036 4.036 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.035 0.965 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.645 -14.356 1.299 14.655 hybrid contribution 0.950 1.332 0.345 1.672 sum 3.595 -13.024 1.644 13.611 Atomic orbital electron populations 1.70053 1.07150 1.26866 1.50980 1.25700 0.95638 1.02246 0.94857 0.85581 0.79029 0.79848 0.77621 1.19275 1.20629 1.20543 1.21624 0.92826 0.92330 1.50760 0.93287 1.17578 0.93674 0.91623 0.93882 0.98944 1.21175 0.96981 0.98620 0.96907 1.21082 0.97513 0.95039 0.99620 1.21908 0.95887 0.96153 0.99854 1.21961 0.96183 1.00605 0.88543 1.61661 1.41080 1.01938 1.21548 1.21769 0.93282 0.89717 0.99264 1.22193 0.99056 0.89802 1.06854 1.23151 1.01900 1.02300 0.94107 1.23029 1.02712 0.99369 0.95258 1.20884 0.95649 0.88757 0.98328 0.93113 0.95911 0.92122 0.94503 0.94621 0.91648 0.91569 0.89267 0.96136 0.95182 0.91344 0.87610 0.89030 0.87590 0.87443 0.88521 0.96489 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.79 11.18 21.45 0.24 -53.55 16 2 C 0.01 0.81 5.20 84.66 0.44 1.25 16 3 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.54 -30.46 8.50 25.60 0.22 -30.25 16 8 H 0.05 2.73 7.72 -2.91 -0.02 2.71 16 9 C 0.05 2.69 1.87 -13.22 -0.02 2.67 16 10 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16 11 C -0.10 -4.92 4.77 30.29 0.14 -4.77 16 12 C -0.09 -4.02 5.42 30.21 0.16 -3.86 16 13 C -0.10 -3.32 6.15 31.39 0.19 -3.13 16 14 C 0.06 1.84 4.78 87.16 0.42 2.26 16 15 N -0.54 -19.84 4.37 -911.81 -3.98 -23.82 16 16 C 0.09 2.60 5.32 86.30 0.46 3.06 16 17 C -0.16 -3.78 4.03 -10.79 -0.04 -3.82 16 18 C -0.18 -3.34 9.61 30.60 0.29 -3.05 16 19 C -0.17 -3.05 10.25 30.60 0.31 -2.74 16 20 C 0.09 4.01 4.04 83.94 0.34 4.35 16 21 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 22 H 0.02 1.08 7.15 -2.39 -0.02 1.06 16 23 H 0.06 3.44 5.63 -2.39 -0.01 3.43 16 24 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.03 1.64 7.38 -2.39 -0.02 1.62 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.09 2.45 5.27 -2.39 -0.01 2.44 16 29 H 0.02 0.73 6.51 -2.39 -0.02 0.72 16 30 H 0.03 0.88 7.81 -2.39 -0.02 0.86 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.11 2.65 7.92 -2.39 -0.02 2.63 16 33 H 0.09 1.73 8.03 -2.39 -0.02 1.72 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.02 0.76 7.24 -2.39 -0.02 0.74 16 38 H 0.04 1.98 7.78 -2.39 -0.02 1.96 16 Total: -1.00 -61.15 287.69 2.20 -58.95 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.00 Total: 10.08 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.91 Total: -38.03 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.74 Total: -77.38 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.15 2.20 -58.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.420 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds