Wall clock time and date at job start Mon Mar 30 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48501 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46835 * 299.99963 * 3 2 1 6 6 H 1.48491 * 109.47017 * 60.00255 * 3 2 1 7 7 C 1.37883 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00458 * 175.00541 * 7 2 1 9 9 C 1.50699 * 119.99703 * 355.01069 * 7 2 1 10 10 C 1.52997 * 109.39792 * 300.09026 * 9 7 2 11 11 N 1.46908 * 109.47215 * 299.09378 * 10 9 7 12 12 C 1.54530 * 109.39802 * 180.27185 * 9 7 2 13 13 C 1.46455 * 110.61674 * 313.33193 * 12 9 7 14 14 C 1.52897 * 114.10236 * 297.23133 * 13 12 9 15 15 C 1.50727 * 108.71512 * 85.77108 * 14 13 12 16 16 C 1.54097 * 110.55803 * 265.27901 * 15 14 13 17 17 C 1.51154 * 109.32605 * 59.86472 * 9 7 2 18 18 C 1.53641 * 117.39659 * 243.93744 * 17 9 7 19 19 C 1.52885 * 60.11974 * 252.38829 * 18 17 9 20 20 H 0.97001 * 119.99301 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47664 * 179.09590 * 10 9 7 22 22 H 1.09001 * 109.47035 * 59.08849 * 10 9 7 23 23 H 1.00899 * 111.00057 * 60.20467 * 11 10 9 24 24 H 1.00896 * 110.99673 * 184.16245 * 11 10 9 25 25 H 1.09004 * 109.24530 * 73.61870 * 12 9 7 26 26 H 1.08995 * 109.24890 * 193.03085 * 12 9 7 27 27 H 1.09006 * 108.55764 * 58.42202 * 13 12 9 28 28 H 1.08994 * 108.56157 * 176.18148 * 13 12 9 29 29 H 1.08997 * 109.59267 * 205.54018 * 14 13 12 30 30 H 1.09003 * 109.59398 * 325.84652 * 14 13 12 31 31 H 1.08999 * 109.26341 * 25.56355 * 15 14 13 32 32 H 1.09007 * 109.25836 * 145.00751 * 15 14 13 33 33 H 1.09000 * 108.96343 * 161.14777 * 16 15 14 34 34 H 1.09001 * 108.96516 * 279.83381 * 16 15 14 35 35 H 1.08998 * 117.48508 * 359.91551 * 18 17 9 36 36 H 1.08999 * 117.48430 * 144.86082 * 18 17 9 37 37 H 1.09001 * 117.48097 * 252.45832 * 19 18 17 38 38 H 1.09005 * 117.47986 * 107.54163 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1960 -0.0820 9 6 1.2552 -2.4967 0.1124 10 6 0.4712 -2.5197 1.4260 11 7 1.4046 -2.4120 2.5553 12 6 2.2604 -3.6703 0.0940 13 6 3.2361 -3.4967 -0.9843 14 6 2.6251 -3.5006 -2.3858 15 6 2.1638 -2.1042 -2.7162 16 6 0.6703 -1.9333 -2.3776 17 6 0.2946 -2.6235 -1.0478 18 6 -1.2066 -2.6567 -0.7223 19 6 -0.4975 -3.9324 -1.1774 20 1 -0.4849 0.8401 0.0004 21 1 -0.0840 -3.4547 1.5016 22 1 -0.2246 -1.6810 1.4486 23 1 1.9293 -1.5514 2.5100 24 1 0.9180 -2.4930 3.4355 25 1 2.7839 -3.7099 1.0493 26 1 1.7195 -4.6043 -0.0576 27 1 3.7541 -2.5494 -0.8343 28 1 3.9666 -4.3035 -0.9244 29 1 3.3745 -3.8191 -3.1104 30 1 1.7766 -4.1843 -2.4128 31 1 2.7476 -1.3868 -2.1394 32 1 2.3150 -1.9177 -3.7795 33 1 0.4438 -0.8699 -2.3011 34 1 0.0733 -2.3643 -3.1814 35 1 -1.4955 -2.5885 0.3265 36 1 -1.8852 -2.1789 -1.4289 37 1 -0.7098 -4.2943 -2.1834 38 1 -0.3201 -4.7039 -0.4280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259931985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:25 Heat of formation + Delta-G solvation = 19.265175 kcal Electronic energy + Delta-G solvation = -17396.385760 eV Core-core repulsion = 15046.108005 eV Total energy + Delta-G solvation = -2350.277754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20164 -34.43081 -33.83862 -32.01762 -30.54932 -27.87100 -25.00496 -24.32081 -21.93647 -21.47249 -20.38290 -18.96418 -17.48874 -15.40189 -15.10097 -14.64513 -14.21439 -13.90553 -13.30873 -13.11460 -12.72006 -12.35549 -12.14213 -11.61028 -11.50711 -11.08470 -10.90610 -10.77072 -10.56550 -10.38050 -10.15575 -9.98737 -9.70401 -9.38918 -9.11012 -9.08528 -8.89937 -8.30747 -8.26521 -8.02947 -7.33846 -5.90271 -3.93818 3.27438 3.38156 3.41690 4.44545 5.13486 5.32520 5.80117 5.87522 5.91204 5.93273 6.12229 6.22265 6.30167 6.48592 6.53755 6.63691 6.65636 6.69202 6.76032 6.81331 6.97177 7.05833 7.12939 7.21911 7.26303 7.31624 7.39079 7.39871 7.52856 7.60385 7.70090 7.78259 7.93618 8.06055 8.45176 8.58723 8.66296 9.04836 9.63858 11.09669 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.015662 C = 0.014189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.440787 B = 1787.387292 C = 1972.925197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.113 3.887 10 C 0.071 3.929 11 N -0.848 5.848 12 C -0.096 4.096 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.111 4.111 16 C -0.054 4.054 17 C -0.025 4.025 18 C -0.153 4.153 19 C -0.227 4.227 20 H 0.254 0.746 21 H 0.023 0.977 22 H 0.059 0.941 23 H 0.343 0.657 24 H 0.310 0.690 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.019 0.981 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -3.738 -1.270 4.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.524 4.524 8 H 0.079 0.921 9 C 0.112 3.888 10 C -0.059 4.059 11 N -0.376 5.376 12 C -0.133 4.133 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.026 4.026 18 C -0.190 4.190 19 C -0.264 4.264 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.157 0.843 24 H 0.119 0.881 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.143 -4.258 -1.592 4.687 hybrid contribution -0.344 1.838 0.164 1.877 sum 0.799 -2.420 -1.429 2.922 Atomic orbital electron populations 1.70014 1.05312 1.25415 1.50339 1.24900 0.94699 0.98180 0.95874 0.86855 0.80545 0.85185 0.77378 1.19893 1.21405 1.21498 1.21062 0.92974 0.89619 1.48750 0.92136 1.17438 0.90298 0.92883 0.88133 1.21941 0.94203 0.97924 0.91872 1.58829 1.30383 1.44526 1.03881 1.20526 0.97561 0.97600 0.97631 1.20378 0.98263 1.00744 0.94935 1.21062 0.99153 0.97979 0.96292 1.21433 0.98096 0.97497 0.97845 1.21221 0.94028 1.00967 0.92886 1.21399 0.91731 0.92833 0.96626 1.22745 0.97282 0.98511 1.00447 1.23317 1.10208 0.92770 1.00129 0.93603 0.95901 0.92307 0.84316 0.88124 0.92004 0.95370 0.91286 0.95851 0.94583 0.92489 0.89746 0.95436 0.91160 0.96193 0.89691 0.91503 0.91326 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.90 9.03 55.43 0.50 -21.40 16 2 C 0.06 1.58 4.22 -17.82 -0.08 1.51 16 3 Si 0.87 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.49 -11.51 3.53 -34.44 -0.12 -11.63 16 8 H 0.06 1.49 5.59 -52.49 -0.29 1.20 16 9 C 0.11 2.50 0.19 -155.79 -0.03 2.47 16 10 C 0.07 1.57 4.09 -3.82 -0.02 1.55 16 11 N -0.85 -17.15 8.55 -10.36 -0.09 -17.24 16 12 C -0.10 -2.00 4.47 -29.05 -0.13 -2.13 16 13 C -0.11 -2.08 5.03 -29.90 -0.15 -2.23 16 14 C -0.11 -2.02 5.54 -27.92 -0.15 -2.17 16 15 C -0.11 -2.24 5.43 -27.30 -0.15 -2.39 16 16 C -0.05 -1.16 4.70 -25.39 -0.12 -1.28 16 17 C -0.02 -0.54 0.14 -154.06 -0.02 -0.56 16 18 C -0.15 -3.27 8.26 -26.46 -0.22 -3.49 16 19 C -0.23 -4.53 7.86 -26.51 -0.21 -4.74 16 20 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 21 H 0.02 0.50 7.05 -51.93 -0.37 0.13 16 22 H 0.06 1.44 5.32 -51.93 -0.28 1.16 16 23 H 0.34 7.29 8.03 -39.29 -0.32 6.97 16 24 H 0.31 5.54 9.08 -39.29 -0.36 5.19 16 25 H 0.06 1.33 7.20 -51.93 -0.37 0.96 16 26 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 27 H 0.07 1.44 5.12 -51.93 -0.27 1.17 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.09 6.35 -51.93 -0.33 0.76 16 31 H 0.08 1.85 5.24 -51.93 -0.27 1.57 16 32 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 1.69 6.63 -51.93 -0.34 1.34 16 34 H 0.02 0.40 7.83 -51.93 -0.41 -0.01 16 35 H 0.08 1.88 5.76 -51.93 -0.30 1.58 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 38 H 0.07 1.48 7.07 -51.93 -0.37 1.12 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -23.99 263.72 -7.88 -31.88 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.85 Total: 13.06 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -1.39 Total: -25.09 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.41 Total: -38.64 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -23.99 -7.88 -31.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -23.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds