Wall clock time and date at job start Mon Mar 30 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48501 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46835 * 299.99963 * 3 2 1 6 6 H 1.48491 * 109.47017 * 60.00255 * 3 2 1 7 7 C 1.37883 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00458 * 175.00541 * 7 2 1 9 9 C 1.50699 * 119.99703 * 355.01069 * 7 2 1 10 10 C 1.52997 * 109.39792 * 300.09026 * 9 7 2 11 11 N 1.46908 * 109.47215 * 299.09378 * 10 9 7 12 12 C 1.54530 * 109.39802 * 180.27185 * 9 7 2 13 13 C 1.46455 * 110.61674 * 313.33193 * 12 9 7 14 14 C 1.52897 * 114.10236 * 297.23133 * 13 12 9 15 15 C 1.50727 * 108.71512 * 85.77108 * 14 13 12 16 16 C 1.54097 * 110.55803 * 265.27901 * 15 14 13 17 17 C 1.51154 * 109.32605 * 59.86472 * 9 7 2 18 18 C 1.53641 * 117.39659 * 243.93744 * 17 9 7 19 19 C 1.52885 * 60.11974 * 252.38829 * 18 17 9 20 20 H 0.97001 * 119.99301 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47664 * 179.09590 * 10 9 7 22 22 H 1.09001 * 109.47035 * 59.08849 * 10 9 7 23 23 H 1.00899 * 111.00057 * 60.20467 * 11 10 9 24 24 H 1.00896 * 110.99673 * 184.16245 * 11 10 9 25 25 H 1.09004 * 109.24530 * 73.61870 * 12 9 7 26 26 H 1.08995 * 109.24890 * 193.03085 * 12 9 7 27 27 H 1.09006 * 108.55764 * 58.42202 * 13 12 9 28 28 H 1.08994 * 108.56157 * 176.18148 * 13 12 9 29 29 H 1.08997 * 109.59267 * 205.54018 * 14 13 12 30 30 H 1.09003 * 109.59398 * 325.84652 * 14 13 12 31 31 H 1.08999 * 109.26341 * 25.56355 * 15 14 13 32 32 H 1.09007 * 109.25836 * 145.00751 * 15 14 13 33 33 H 1.09000 * 108.96343 * 161.14777 * 16 15 14 34 34 H 1.09001 * 108.96516 * 279.83381 * 16 15 14 35 35 H 1.08998 * 117.48508 * 359.91551 * 18 17 9 36 36 H 1.08999 * 117.48430 * 144.86082 * 18 17 9 37 37 H 1.09001 * 117.48097 * 252.45832 * 19 18 17 38 38 H 1.09005 * 117.47986 * 107.54163 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1960 -0.0820 9 6 1.2552 -2.4967 0.1124 10 6 0.4712 -2.5197 1.4260 11 7 1.4046 -2.4120 2.5553 12 6 2.2604 -3.6703 0.0940 13 6 3.2361 -3.4967 -0.9843 14 6 2.6251 -3.5006 -2.3858 15 6 2.1638 -2.1042 -2.7162 16 6 0.6703 -1.9333 -2.3776 17 6 0.2946 -2.6235 -1.0478 18 6 -1.2066 -2.6567 -0.7223 19 6 -0.4975 -3.9324 -1.1774 20 1 -0.4849 0.8401 0.0004 21 1 -0.0840 -3.4547 1.5016 22 1 -0.2246 -1.6810 1.4486 23 1 1.9293 -1.5514 2.5100 24 1 0.9180 -2.4930 3.4355 25 1 2.7839 -3.7099 1.0493 26 1 1.7195 -4.6043 -0.0576 27 1 3.7541 -2.5494 -0.8343 28 1 3.9666 -4.3035 -0.9244 29 1 3.3745 -3.8191 -3.1104 30 1 1.7766 -4.1843 -2.4128 31 1 2.7476 -1.3868 -2.1394 32 1 2.3150 -1.9177 -3.7795 33 1 0.4438 -0.8699 -2.3011 34 1 0.0733 -2.3643 -3.1814 35 1 -1.4955 -2.5885 0.3265 36 1 -1.8852 -2.1789 -1.4289 37 1 -0.7098 -4.2943 -2.1834 38 1 -0.3201 -4.7039 -0.4280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259931985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:25 Heat of formation + Delta-G solvation = 6.642730 kcal Electronic energy + Delta-G solvation = -17396.933110 eV Core-core repulsion = 15046.108005 eV Total energy + Delta-G solvation = -2350.825105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88692 -36.03448 -35.55827 -33.86252 -32.20155 -29.58486 -26.71387 -26.11940 -23.56996 -23.13350 -22.07934 -20.60831 -19.25127 -17.17711 -16.78137 -16.48041 -15.90895 -15.55591 -14.99325 -14.81338 -14.37821 -14.07778 -13.79978 -13.27464 -13.18434 -12.89866 -12.69720 -12.53045 -12.35464 -12.05131 -11.79606 -11.70760 -11.41877 -11.00790 -10.80541 -10.72725 -10.56612 -10.15827 -10.03875 -9.71452 -9.05161 -7.79473 -5.84289 1.41835 1.51099 1.55819 2.56386 3.40177 3.48833 4.17316 4.25888 4.29505 4.37968 4.53408 4.57600 4.66263 4.81241 4.88878 4.98604 5.02788 5.09268 5.13631 5.22984 5.29830 5.37796 5.47061 5.50807 5.60000 5.64376 5.76049 5.79313 5.83589 5.90150 5.99314 6.04989 6.19321 6.26220 6.68557 6.78992 6.99280 7.21122 7.73487 9.17966 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.015662 C = 0.014189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.440787 B = 1787.387292 C = 1972.925197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.037 3.963 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.475 4.475 8 H 0.051 0.949 9 C 0.109 3.891 10 C 0.080 3.920 11 N -0.843 5.843 12 C -0.090 4.090 13 C -0.105 4.105 14 C -0.101 4.101 15 C -0.108 4.108 16 C -0.052 4.052 17 C -0.038 4.038 18 C -0.160 4.160 19 C -0.203 4.203 20 H 0.247 0.753 21 H 0.023 0.977 22 H 0.033 0.967 23 H 0.338 0.662 24 H 0.324 0.676 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -5.040 -1.836 5.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.163 4.163 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.109 3.891 10 C -0.051 4.051 11 N -0.371 5.371 12 C -0.127 4.127 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.089 4.089 17 C -0.039 4.039 18 C -0.197 4.197 19 C -0.240 4.240 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.151 0.849 24 H 0.135 0.865 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.812 -5.567 -2.147 6.236 hybrid contribution -0.549 2.240 0.361 2.335 sum 1.262 -3.327 -1.786 3.981 Atomic orbital electron populations 1.70112 1.05827 1.25048 1.51455 1.25220 0.95035 0.99626 0.96397 0.86244 0.79810 0.83384 0.76451 1.19850 1.22366 1.22121 1.21108 0.92451 0.90349 1.47439 0.93127 1.17472 0.90630 0.92686 0.88345 1.21772 0.93950 0.96792 0.92603 1.58791 1.30040 1.43993 1.04273 1.20458 0.97421 0.97072 0.97789 1.20336 0.98222 1.00645 0.95071 1.21012 0.99747 0.96870 0.96261 1.21375 0.96572 0.98004 0.98628 1.21179 0.95385 0.99094 0.93288 1.21375 0.91586 0.94397 0.96523 1.22650 0.97286 1.00082 0.99704 1.23300 1.07804 0.91873 1.01017 0.94347 0.95819 0.94874 0.84916 0.86546 0.92925 0.94907 0.92883 0.93828 0.92098 0.92471 0.91883 0.93646 0.94196 0.95160 0.90862 0.92014 0.89680 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.89 9.03 21.45 0.19 -44.70 16 2 C 0.04 1.79 4.22 84.66 0.36 2.15 16 3 Si 0.91 41.03 29.54 68.60 2.03 43.05 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 7 C -0.47 -22.31 3.53 25.60 0.09 -22.22 16 8 H 0.05 2.47 5.59 -2.91 -0.02 2.46 16 9 C 0.11 4.72 0.19 -53.01 -0.01 4.71 16 10 C 0.08 3.46 4.09 86.30 0.35 3.81 16 11 N -0.84 -33.27 8.55 -186.71 -1.60 -34.87 16 12 C -0.09 -3.58 4.47 29.09 0.13 -3.45 16 13 C -0.11 -3.87 5.03 28.54 0.14 -3.73 16 14 C -0.10 -3.50 5.54 29.82 0.17 -3.33 16 15 C -0.11 -4.15 5.43 30.23 0.16 -3.98 16 16 C -0.05 -2.18 4.70 31.46 0.15 -2.03 16 17 C -0.04 -1.59 0.14 -51.89 -0.01 -1.60 16 18 C -0.16 -6.74 8.26 30.77 0.25 -6.48 16 19 C -0.20 -7.62 7.86 30.74 0.24 -7.38 16 20 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 21 H 0.02 1.01 7.05 -2.39 -0.02 0.99 16 22 H 0.03 1.63 5.32 -2.39 -0.01 1.62 16 23 H 0.34 14.13 8.03 -89.69 -0.72 13.41 16 24 H 0.32 11.22 9.08 -89.70 -0.81 10.40 16 25 H 0.05 2.17 7.20 -2.38 -0.02 2.15 16 26 H 0.03 1.26 6.65 -2.39 -0.02 1.24 16 27 H 0.05 2.13 5.12 -2.38 -0.01 2.11 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.98 6.35 -2.39 -0.02 1.97 16 31 H 0.06 2.69 5.24 -2.39 -0.01 2.68 16 32 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.04 1.91 6.63 -2.39 -0.02 1.89 16 34 H 0.03 1.17 7.83 -2.39 -0.02 1.16 16 35 H 0.07 3.24 5.76 -2.39 -0.01 3.23 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.93 8.01 -2.39 -0.02 2.91 16 38 H 0.08 2.95 7.07 -2.38 -0.02 2.93 16 Total: -1.00 -49.22 263.72 2.19 -47.03 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.46 Total: 33.02 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 2.03 Total: -43.54 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.40 Total: -79.56 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -49.22 2.19 -47.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.674 kcal (2) G-P(sol) polarization free energy of solvation -49.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds