Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47129 * 2 1 4 4 N 1.40079 * 126.03878 * 270.15200 * 3 2 1 5 5 C 1.30842 * 108.20826 * 180.23524 * 4 3 2 6 6 C 1.39866 * 108.19841 * 359.78318 * 5 4 3 7 7 C 1.34949 * 126.03355 * 90.00495 * 3 2 1 8 8 C 1.50697 * 126.13241 * 0.03237 * 7 3 2 9 9 H 1.09008 * 109.46681 * 334.71450 * 8 7 3 10 10 C 1.52993 * 109.47209 * 94.71402 * 8 7 3 11 11 N 1.46905 * 109.47039 * 185.00333 * 10 8 7 12 12 C 1.52997 * 109.46992 * 214.72034 * 8 7 3 13 13 C 1.50709 * 109.46936 * 174.99781 * 12 8 7 14 14 H 1.07994 * 119.99755 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99797 * 179.97438 * 13 12 8 16 16 N 1.31505 * 120.00451 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99559 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47393 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46981 * 120.00437 * 17 15 13 20 20 H 1.48501 * 109.47184 * 239.99960 * 17 15 13 21 21 H 1.08994 * 109.47304 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46835 * 300.00003 * 1 2 3 23 23 H 1.08997 * 109.47175 * 59.99664 * 1 2 3 24 24 H 1.09004 * 109.46835 * 239.99997 * 2 1 3 25 25 H 1.08997 * 109.47175 * 120.00336 * 2 1 3 26 26 H 1.07994 * 125.90037 * 179.74650 * 5 4 3 27 27 H 1.08003 * 126.04311 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47393 * 65.00614 * 10 8 7 29 29 H 1.08998 * 109.47408 * 305.00260 * 10 8 7 30 30 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 31 31 H 1.00896 * 110.99543 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46691 * 294.99014 * 12 8 7 33 33 H 1.08993 * 109.47449 * 54.99918 * 12 8 7 34 34 H 0.97002 * 120.00322 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2902 2.1592 -1.1327 5 6 2.7112 3.3315 -0.7321 6 6 2.7162 3.3393 0.6665 7 6 2.2831 2.1296 1.0913 8 6 2.1300 1.6942 2.5258 9 1 1.3845 0.9013 2.5872 10 6 3.4713 1.1747 3.0470 11 7 3.2954 0.6399 4.4039 12 6 1.6793 2.8846 3.3748 13 6 1.4079 2.4229 4.7834 14 1 1.5428 1.3842 5.0467 15 6 0.9872 3.3265 5.7361 16 7 0.8223 4.5912 5.4154 17 14 0.6500 2.7540 7.4819 18 1 0.9086 1.2952 7.5832 19 1 1.5410 3.4806 8.4219 20 1 -0.7670 3.0312 7.8289 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.0048 4.1512 -1.3710 27 1 3.0129 4.1649 1.2964 28 1 4.1934 1.9909 3.0690 29 1 3.8354 0.3852 2.3897 30 1 2.5835 -0.0749 4.4214 31 1 4.1681 0.2906 4.7708 32 1 2.4640 3.6411 3.3853 33 1 0.7700 3.3101 2.9503 34 1 0.5260 5.2268 6.0855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259942905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = 73.248545 kcal Electronic energy + Delta-G solvation = -15596.581051 eV Core-core repulsion = 13145.103848 eV Total energy + Delta-G solvation = -2451.477203 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83104 -36.06665 -34.19917 -32.36784 -31.25622 -29.17828 -28.10520 -25.85367 -23.59027 -22.63060 -21.35814 -20.13846 -18.55228 -16.98447 -15.62551 -14.94485 -14.72124 -14.56298 -14.36849 -13.91799 -13.59630 -13.43367 -12.76231 -12.37318 -12.07448 -11.92085 -11.68437 -11.46551 -11.18225 -10.85555 -10.57536 -10.39629 -10.20482 -9.97405 -9.47679 -8.93966 -8.75521 -8.17323 -7.96315 -7.53573 -5.77289 -3.71240 2.35335 2.89818 3.36061 3.43760 3.51182 3.55012 4.64373 4.74387 5.00256 5.10343 5.25460 5.37048 5.51147 5.60350 5.61831 5.69052 5.79563 5.86101 5.97570 6.14842 6.25201 6.32805 6.53767 6.78965 6.96291 7.16405 7.52511 7.80250 7.80905 7.86935 8.06778 8.18472 8.28658 8.64326 9.35114 9.87704 11.35770 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.007942 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280017 B = 3524.713818 C = 3717.716777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.376 5.376 4 N -0.318 5.318 5 C 0.041 3.959 6 C -0.270 4.270 7 C 0.111 3.889 8 C -0.026 4.026 9 H 0.066 0.934 10 C 0.093 3.907 11 N -0.811 5.811 12 C 0.044 3.956 13 C -0.479 4.479 14 H 0.083 0.917 15 C 0.045 3.955 16 N -0.908 5.908 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.290 1.290 20 H -0.293 1.293 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.176 0.824 27 H 0.147 0.853 28 H 0.070 0.930 29 H -0.002 1.002 30 H 0.334 0.666 31 H 0.322 0.678 32 H 0.021 0.979 33 H 0.013 0.987 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -8.794 -8.477 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 N -0.160 5.160 4 N -0.139 5.139 5 C -0.144 4.144 6 C -0.299 4.299 7 C -0.017 4.017 8 C -0.047 4.047 9 H 0.084 0.916 10 C -0.038 4.038 11 N -0.341 5.341 12 C 0.007 3.993 13 C -0.518 4.518 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.551 5.551 17 Si 0.720 3.280 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.219 1.219 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.193 0.807 27 H 0.165 0.835 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.558 -8.787 -9.240 13.005 hybrid contribution 0.259 -0.439 1.233 1.334 sum 2.816 -9.227 -8.007 12.537 Atomic orbital electron populations 1.22195 0.94517 1.02639 1.03572 1.21515 0.95215 0.78741 1.03520 1.48624 1.52102 1.11637 1.03596 1.77182 1.23494 1.04689 1.08555 1.23736 0.99714 0.95634 0.95317 1.21304 1.14996 0.99175 0.94394 1.21569 0.97402 0.92048 0.90657 1.20163 0.96698 1.01975 0.85817 0.91598 1.21542 0.96707 0.97294 0.88305 1.58965 1.10755 1.41877 1.22460 1.19059 0.96211 0.90349 0.93720 1.21565 1.40599 0.96252 0.93368 0.89883 1.24988 0.96839 0.94996 0.98457 1.69994 1.49244 1.02232 1.33583 0.86561 0.77057 0.78621 0.85717 1.19906 1.21670 1.21947 0.90935 0.91348 0.91899 0.89455 0.89409 0.80662 0.83484 0.91159 0.98420 0.85317 0.86587 0.96088 0.96851 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.13 1.73 6.75 -4.04 -0.03 1.70 16 3 N -0.38 -6.44 3.61 -57.14 -0.21 -6.65 16 4 N -0.32 -5.67 12.58 30.62 0.39 -5.29 16 5 C 0.04 0.70 12.03 -17.36 -0.21 0.49 16 6 C -0.27 -5.05 9.99 -40.01 -0.40 -5.45 16 7 C 0.11 2.08 5.86 -82.26 -0.48 1.60 16 8 C -0.03 -0.50 2.13 -91.78 -0.20 -0.70 16 9 H 0.07 1.25 7.51 -51.92 -0.39 0.86 16 10 C 0.09 1.64 6.14 -3.82 -0.02 1.62 16 11 N -0.81 -14.05 6.70 -10.37 -0.07 -14.12 16 12 C 0.04 1.10 3.93 -27.88 -0.11 0.99 16 13 C -0.48 -12.78 7.94 -34.44 -0.27 -13.06 16 14 H 0.08 2.08 5.12 -52.49 -0.27 1.81 16 15 C 0.05 1.29 5.46 -17.82 -0.10 1.19 16 16 N -0.91 -27.49 13.29 55.43 0.74 -26.76 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.04 7.55 -51.93 -0.39 0.65 16 26 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.15 2.79 7.52 -52.48 -0.39 2.39 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 30 H 0.33 5.34 8.27 -39.29 -0.33 5.01 16 31 H 0.32 4.70 9.08 -39.29 -0.36 4.35 16 32 H 0.02 0.56 7.54 -51.93 -0.39 0.17 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -32.07 283.44 -6.38 -38.44 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.03 Total: 6.54 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.44 Total: -13.34 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.85 Total: -52.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.07 -6.38 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259942905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.692 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds