Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47129 * 2 1 4 4 N 1.40079 * 126.03878 * 270.15200 * 3 2 1 5 5 C 1.30842 * 108.20826 * 180.23524 * 4 3 2 6 6 C 1.39866 * 108.19841 * 359.78318 * 5 4 3 7 7 C 1.34949 * 126.03355 * 90.00495 * 3 2 1 8 8 C 1.50697 * 126.13241 * 0.03237 * 7 3 2 9 9 H 1.09008 * 109.46681 * 334.71450 * 8 7 3 10 10 C 1.52993 * 109.47209 * 94.71402 * 8 7 3 11 11 N 1.46905 * 109.47039 * 185.00333 * 10 8 7 12 12 C 1.52997 * 109.46992 * 214.72034 * 8 7 3 13 13 C 1.50709 * 109.46936 * 174.99781 * 12 8 7 14 14 H 1.07994 * 119.99755 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99797 * 179.97438 * 13 12 8 16 16 N 1.31505 * 120.00451 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99559 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47393 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46981 * 120.00437 * 17 15 13 20 20 H 1.48501 * 109.47184 * 239.99960 * 17 15 13 21 21 H 1.08994 * 109.47304 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46835 * 300.00003 * 1 2 3 23 23 H 1.08997 * 109.47175 * 59.99664 * 1 2 3 24 24 H 1.09004 * 109.46835 * 239.99997 * 2 1 3 25 25 H 1.08997 * 109.47175 * 120.00336 * 2 1 3 26 26 H 1.07994 * 125.90037 * 179.74650 * 5 4 3 27 27 H 1.08003 * 126.04311 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47393 * 65.00614 * 10 8 7 29 29 H 1.08998 * 109.47408 * 305.00260 * 10 8 7 30 30 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 31 31 H 1.00896 * 110.99543 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46691 * 294.99014 * 12 8 7 33 33 H 1.08993 * 109.47449 * 54.99918 * 12 8 7 34 34 H 0.97002 * 120.00322 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2902 2.1592 -1.1327 5 6 2.7112 3.3315 -0.7321 6 6 2.7162 3.3393 0.6665 7 6 2.2831 2.1296 1.0913 8 6 2.1300 1.6942 2.5258 9 1 1.3845 0.9013 2.5872 10 6 3.4713 1.1747 3.0470 11 7 3.2954 0.6399 4.4039 12 6 1.6793 2.8846 3.3748 13 6 1.4079 2.4229 4.7834 14 1 1.5428 1.3842 5.0467 15 6 0.9872 3.3265 5.7361 16 7 0.8223 4.5912 5.4154 17 14 0.6500 2.7540 7.4819 18 1 0.9086 1.2952 7.5832 19 1 1.5410 3.4806 8.4219 20 1 -0.7670 3.0312 7.8289 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.0048 4.1512 -1.3710 27 1 3.0129 4.1649 1.2964 28 1 4.1934 1.9909 3.0690 29 1 3.8354 0.3852 2.3897 30 1 2.5835 -0.0749 4.4214 31 1 4.1681 0.2906 4.7708 32 1 2.4640 3.6411 3.3853 33 1 0.7700 3.3101 2.9503 34 1 0.5260 5.2268 6.0855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259942905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = 51.210531 kcal Electronic energy + Delta-G solvation = -15597.536691 eV Core-core repulsion = 13145.103848 eV Total energy + Delta-G solvation = -2452.432843 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20504 -37.66723 -35.34985 -34.37795 -32.78319 -30.47224 -29.76212 -27.60549 -24.73195 -24.46685 -22.88044 -21.51522 -20.02479 -18.67587 -17.34689 -16.43246 -16.21983 -16.12322 -15.75273 -15.45005 -14.88158 -14.82103 -14.21719 -14.04618 -13.48747 -13.36039 -13.12740 -12.94707 -12.76762 -12.39207 -12.21876 -12.19793 -11.75500 -11.72112 -11.31465 -10.90946 -10.36597 -10.11016 -9.39853 -8.98207 -7.94388 -5.93567 0.95519 1.49521 1.51127 1.63074 1.66726 1.95251 2.59835 3.40951 3.61783 3.66129 4.06252 4.09393 4.19273 4.25726 4.32850 4.35278 4.48645 4.66524 4.77716 4.86651 4.95964 5.05953 5.11506 5.20430 5.39455 5.68211 5.80164 5.82949 6.07327 6.18054 6.48476 6.56546 6.81486 6.89852 7.24072 7.69672 9.19834 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.007942 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280017 B = 3524.713818 C = 3717.716777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.373 5.373 4 N -0.329 5.329 5 C 0.045 3.955 6 C -0.293 4.293 7 C 0.098 3.902 8 C -0.012 4.012 9 H 0.076 0.924 10 C 0.102 3.898 11 N -0.831 5.831 12 C 0.054 3.946 13 C -0.475 4.475 14 H 0.104 0.896 15 C -0.020 4.020 16 N -0.954 5.954 17 Si 0.958 3.042 18 H -0.252 1.252 19 H -0.295 1.295 20 H -0.295 1.295 21 H 0.107 0.893 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.210 0.790 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.343 0.657 31 H 0.340 0.660 32 H -0.010 1.010 33 H -0.026 1.026 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -11.303 -8.670 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 N -0.156 5.156 4 N -0.150 5.150 5 C -0.140 4.140 6 C -0.323 4.323 7 C -0.031 4.031 8 C -0.032 4.032 9 H 0.094 0.906 10 C -0.030 4.030 11 N -0.363 5.363 12 C 0.017 3.983 13 C -0.514 4.514 14 H 0.122 0.878 15 C -0.213 4.213 16 N -0.599 5.599 17 Si 0.786 3.214 18 H -0.176 1.176 19 H -0.222 1.222 20 H -0.222 1.222 21 H 0.125 0.875 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.226 0.774 27 H 0.150 0.850 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.008 0.992 33 H -0.007 1.007 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.887 -11.348 -9.441 15.041 hybrid contribution 0.159 0.337 1.231 1.286 sum 3.046 -11.011 -8.210 14.068 Atomic orbital electron populations 1.22154 0.93937 1.04366 1.01796 1.21944 0.95702 0.76937 1.05439 1.48918 1.51375 1.12711 1.02635 1.77146 1.23739 1.05094 1.09007 1.24200 0.98779 0.96269 0.94705 1.21403 1.16085 0.99177 0.95588 1.21419 0.98165 0.92650 0.90825 1.19858 0.98113 0.99638 0.85613 0.90581 1.21362 0.94855 0.97564 0.89170 1.58784 1.12360 1.42780 1.22397 1.18828 0.93477 0.91708 0.94331 1.22093 1.38447 0.97029 0.93781 0.87794 1.25902 0.97358 0.95118 1.02940 1.70167 1.51180 1.03689 1.34827 0.85490 0.76324 0.79183 0.80441 1.17553 1.22169 1.22237 0.87463 0.93745 0.92948 0.87304 0.87727 0.77393 0.84952 0.92945 0.95372 0.84261 0.84579 0.99177 1.00742 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.94 16 2 C 0.12 2.81 6.75 86.38 0.58 3.40 16 3 N -0.37 -12.20 3.61 -334.69 -1.21 -13.41 16 4 N -0.33 -11.22 12.58 -57.03 -0.72 -11.94 16 5 C 0.05 1.48 12.03 85.23 1.03 2.51 16 6 C -0.29 -11.16 9.99 21.99 0.22 -10.94 16 7 C 0.10 3.65 5.86 41.41 0.24 3.89 16 8 C -0.01 -0.45 2.13 -11.54 -0.02 -0.47 16 9 H 0.08 2.77 7.51 -2.38 -0.02 2.75 16 10 C 0.10 3.43 6.14 86.30 0.53 3.96 16 11 N -0.83 -26.82 6.70 -186.72 -1.25 -28.07 16 12 C 0.05 2.78 3.93 29.85 0.12 2.89 16 13 C -0.47 -25.31 7.94 25.60 0.20 -25.11 16 14 H 0.10 5.02 5.12 -2.91 -0.01 5.00 16 15 C -0.02 -1.11 5.46 84.66 0.46 -0.65 16 16 N -0.95 -59.49 13.29 21.45 0.28 -59.20 16 17 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 18 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.10 2.11 7.55 -2.39 -0.02 2.09 16 26 H 0.21 5.08 8.06 -2.91 -0.02 5.05 16 27 H 0.13 5.32 7.52 -2.91 -0.02 5.30 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.34 9.91 8.27 -89.69 -0.74 9.17 16 31 H 0.34 9.01 9.08 -89.70 -0.81 8.19 16 32 H -0.01 -0.58 7.54 -2.39 -0.02 -0.60 16 33 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -69.94 283.44 2.77 -67.16 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.46 Total: 21.94 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.10 Total: -23.45 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -2.89 Total: -112.62 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.94 2.77 -67.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259942905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.374 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds