Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47432 * 300.00473 * 3 2 1 6 6 H 1.48512 * 109.46826 * 60.00341 * 3 2 1 7 7 C 1.37880 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.09006 * 108.82819 * 61.49641 * 9 7 2 11 11 C 1.54160 * 108.77420 * 303.03587 * 9 7 2 12 12 C 1.53817 * 111.97288 * 197.73273 * 11 9 7 13 13 C 1.50813 * 111.62154 * 319.04216 * 12 11 9 14 14 N 1.47636 * 108.04841 * 95.05539 * 13 12 11 15 15 C 1.46904 * 110.99815 * 150.34615 * 14 13 12 16 16 C 1.52999 * 109.47229 * 293.95088 * 15 14 13 17 17 C 1.52998 * 117.50059 * 243.62761 * 16 15 14 18 18 C 1.53000 * 117.50015 * 175.00224 * 16 15 14 19 19 C 1.39775 * 114.75862 * 277.20065 * 14 13 12 20 20 C 1.50751 * 108.85350 * 179.97438 * 9 7 2 21 21 H 0.96995 * 119.99958 * 359.97438 * 1 2 3 22 22 H 1.08995 * 108.98380 * 318.37511 * 11 9 7 23 23 H 1.08999 * 108.98038 * 77.17746 * 11 9 7 24 24 H 1.09000 * 109.05234 * 198.48775 * 12 11 9 25 25 H 1.09002 * 109.05086 * 79.59149 * 12 11 9 26 26 H 1.09001 * 109.74921 * 335.41666 * 13 12 11 27 27 H 1.09005 * 109.74940 * 214.69038 * 13 12 11 28 28 H 1.08998 * 109.47159 * 53.95653 * 15 14 13 29 29 H 1.09001 * 109.46516 * 173.95671 * 15 14 13 30 30 H 1.09004 * 115.54981 * 29.33206 * 16 15 14 31 31 H 1.09007 * 117.49767 * 359.97438 * 17 16 15 32 32 H 1.09000 * 117.50025 * 145.02218 * 17 16 15 33 33 H 1.08999 * 117.49666 * 214.98115 * 18 16 15 34 34 H 1.08997 * 117.49713 * 359.97438 * 18 16 15 35 35 H 1.09003 * 109.01529 * 182.86172 * 19 14 13 36 36 H 1.08993 * 109.02200 * 301.67937 * 19 14 13 37 37 H 1.09003 * 109.54262 * 93.86198 * 20 9 7 38 38 H 1.08999 * 109.55168 * 333.58718 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2123 6 1 1.8905 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6483 -2.5575 -0.9070 11 6 0.3143 -2.5313 1.2234 12 6 -0.1568 -3.9586 1.5504 13 6 -0.4898 -4.7339 0.3004 14 7 0.7004 -5.5197 -0.0812 15 6 0.3148 -6.7552 -0.7762 16 6 -0.4323 -7.6736 0.1929 17 6 0.2122 -9.0198 0.5294 18 6 -1.0226 -8.9669 -0.3725 19 6 1.6593 -4.8123 -0.8117 20 6 2.2429 -3.6344 -0.0018 21 1 -0.4850 0.8400 0.0004 22 1 0.8438 -2.1265 2.0858 23 1 -0.5575 -1.9096 1.0191 24 1 -1.0433 -3.9047 2.1824 25 1 0.6334 -4.4788 2.0918 26 1 -0.7487 -4.0440 -0.5029 27 1 -1.3269 -5.4044 0.4949 28 1 -0.3329 -6.5114 -1.6182 29 1 1.2090 -7.2613 -1.1401 30 1 -0.9886 -7.1700 0.9836 31 1 1.1684 -9.2513 0.0599 32 1 0.0801 -9.4021 1.5415 33 1 -1.9670 -9.3143 0.0463 34 1 -0.8790 -9.1632 -1.4350 35 1 2.4679 -5.4899 -1.0860 36 1 1.1989 -4.4247 -1.7204 37 1 2.4315 -3.9550 1.0228 38 1 3.1753 -3.3036 -0.4593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = 18.694912 kcal Electronic energy + Delta-G solvation = -15904.509114 eV Core-core repulsion = 13554.206631 eV Total energy + Delta-G solvation = -2350.302483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02499 -36.92269 -34.17458 -31.80999 -31.09722 -27.46744 -25.30944 -24.27015 -22.58217 -22.34766 -20.28995 -19.88816 -18.15470 -16.54816 -15.85051 -14.99724 -14.83228 -14.42643 -14.09454 -13.52495 -13.21676 -12.85781 -12.31799 -12.11043 -11.54969 -11.48571 -11.29453 -11.24617 -10.90708 -10.78593 -10.46480 -10.28636 -10.14674 -9.97865 -9.85436 -9.60101 -9.24973 -8.95902 -8.53940 -8.22735 -7.62361 -5.92244 -3.96826 3.32348 3.40450 3.44535 3.82325 4.40164 4.48802 4.81506 4.98448 5.10946 5.36833 5.50530 5.61025 5.63687 5.67368 5.80525 5.90093 5.92594 6.05485 6.11353 6.13569 6.29383 6.34814 6.37080 6.51899 6.72229 6.81292 6.93956 7.02585 7.30041 7.35023 7.55957 7.74266 7.86635 8.00701 8.14329 8.24686 8.54523 9.07791 9.66984 11.13781 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.064180 B = 0.006029 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.165130 B = 4643.443204 C = 4826.560892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.044 3.956 10 H 0.017 0.983 11 C -0.099 4.099 12 C -0.119 4.119 13 C 0.070 3.930 14 N -0.548 5.548 15 C 0.090 3.910 16 C -0.140 4.140 17 C -0.176 4.176 18 C -0.187 4.187 19 C 0.075 3.925 20 C -0.101 4.101 21 H 0.257 0.743 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -13.631 -0.063 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.026 3.974 10 H 0.036 0.964 11 C -0.137 4.137 12 C -0.157 4.157 13 C -0.057 4.057 14 N -0.273 5.273 15 C -0.038 4.038 16 C -0.158 4.158 17 C -0.213 4.213 18 C -0.225 4.225 19 C -0.054 4.054 20 C -0.139 4.139 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.356 -13.589 0.328 13.660 hybrid contribution 0.043 1.210 -0.706 1.401 sum -1.313 -12.379 -0.378 12.454 Atomic orbital electron populations 1.69940 1.05837 1.25994 1.51225 1.24988 0.94826 0.98959 0.95310 0.86615 0.80214 0.84180 0.77460 1.19861 1.21193 1.21132 1.21447 0.92762 0.90901 1.49978 0.92777 1.18522 0.92516 0.92046 0.94305 0.96449 1.21932 1.01187 0.92019 0.98588 1.21535 0.99719 0.98410 0.96071 1.21815 0.90288 0.94943 0.98620 1.58869 1.14069 1.07043 1.47279 1.21597 0.97941 0.90716 0.93540 1.22366 1.02527 0.89069 1.01880 1.22955 0.96851 1.01284 1.00245 1.22956 0.97635 1.02493 0.99400 1.21018 0.93626 0.95900 0.94849 1.21582 0.99135 0.94364 0.98844 0.93307 0.94427 0.90484 0.94053 0.92264 0.93541 0.92277 0.94951 0.91392 0.87301 0.89041 0.89178 0.89102 0.89127 0.92942 0.96749 0.92636 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 11.32 55.43 0.63 -25.14 16 2 C 0.06 1.68 5.28 -17.82 -0.09 1.59 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.27 8.33 -34.44 -0.29 -14.55 16 8 H 0.05 1.50 7.44 -52.48 -0.39 1.10 16 9 C 0.04 1.11 1.65 -92.29 -0.15 0.96 16 10 H 0.02 0.48 6.58 -51.93 -0.34 0.14 16 11 C -0.10 -2.38 4.64 -25.70 -0.12 -2.50 16 12 C -0.12 -2.34 5.41 -27.40 -0.15 -2.49 16 13 C 0.07 1.26 5.07 -4.52 -0.02 1.24 16 14 N -0.55 -9.43 3.93 -240.02 -0.94 -10.37 16 15 C 0.09 1.28 5.21 -3.82 -0.02 1.26 16 16 C -0.14 -1.76 5.48 -90.62 -0.50 -2.25 16 17 C -0.18 -1.91 10.18 -26.73 -0.27 -2.19 16 18 C -0.19 -1.94 10.25 -26.73 -0.27 -2.21 16 19 C 0.08 1.40 4.92 -6.76 -0.03 1.36 16 20 C -0.10 -2.17 5.14 -27.13 -0.14 -2.31 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.04 0.94 7.97 -51.93 -0.41 0.53 16 23 H 0.08 2.04 6.51 -51.93 -0.34 1.71 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.16 7.26 -51.93 -0.38 0.78 16 26 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 27 H 0.06 0.94 6.11 -51.93 -0.32 0.62 16 28 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 30 H 0.11 1.46 6.60 -51.93 -0.34 1.12 16 31 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.87 7.74 -51.93 -0.40 0.47 16 36 H 0.01 0.29 7.54 -51.93 -0.39 -0.10 16 37 H 0.05 1.19 7.11 -51.93 -0.37 0.82 16 38 H 0.06 1.19 7.50 -51.93 -0.39 0.80 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -28.22 287.20 -9.54 -37.76 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.47 Total: -1.03 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.06 Total: -22.09 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.32 Total: -35.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.22 -9.54 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.452 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds