Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47432 * 300.00473 * 3 2 1 6 6 H 1.48512 * 109.46826 * 60.00341 * 3 2 1 7 7 C 1.37880 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.09006 * 108.82819 * 61.49641 * 9 7 2 11 11 C 1.54160 * 108.77420 * 303.03587 * 9 7 2 12 12 C 1.53817 * 111.97288 * 197.73273 * 11 9 7 13 13 C 1.50813 * 111.62154 * 319.04216 * 12 11 9 14 14 N 1.47636 * 108.04841 * 95.05539 * 13 12 11 15 15 C 1.46904 * 110.99815 * 150.34615 * 14 13 12 16 16 C 1.52999 * 109.47229 * 293.95088 * 15 14 13 17 17 C 1.52998 * 117.50059 * 243.62761 * 16 15 14 18 18 C 1.53000 * 117.50015 * 175.00224 * 16 15 14 19 19 C 1.39775 * 114.75862 * 277.20065 * 14 13 12 20 20 C 1.50751 * 108.85350 * 179.97438 * 9 7 2 21 21 H 0.96995 * 119.99958 * 359.97438 * 1 2 3 22 22 H 1.08995 * 108.98380 * 318.37511 * 11 9 7 23 23 H 1.08999 * 108.98038 * 77.17746 * 11 9 7 24 24 H 1.09000 * 109.05234 * 198.48775 * 12 11 9 25 25 H 1.09002 * 109.05086 * 79.59149 * 12 11 9 26 26 H 1.09001 * 109.74921 * 335.41666 * 13 12 11 27 27 H 1.09005 * 109.74940 * 214.69038 * 13 12 11 28 28 H 1.08998 * 109.47159 * 53.95653 * 15 14 13 29 29 H 1.09001 * 109.46516 * 173.95671 * 15 14 13 30 30 H 1.09004 * 115.54981 * 29.33206 * 16 15 14 31 31 H 1.09007 * 117.49767 * 359.97438 * 17 16 15 32 32 H 1.09000 * 117.50025 * 145.02218 * 17 16 15 33 33 H 1.08999 * 117.49666 * 214.98115 * 18 16 15 34 34 H 1.08997 * 117.49713 * 359.97438 * 18 16 15 35 35 H 1.09003 * 109.01529 * 182.86172 * 19 14 13 36 36 H 1.08993 * 109.02200 * 301.67937 * 19 14 13 37 37 H 1.09003 * 109.54262 * 93.86198 * 20 9 7 38 38 H 1.08999 * 109.55168 * 333.58718 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2123 6 1 1.8905 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6483 -2.5575 -0.9070 11 6 0.3143 -2.5313 1.2234 12 6 -0.1568 -3.9586 1.5504 13 6 -0.4898 -4.7339 0.3004 14 7 0.7004 -5.5197 -0.0812 15 6 0.3148 -6.7552 -0.7762 16 6 -0.4323 -7.6736 0.1929 17 6 0.2122 -9.0198 0.5294 18 6 -1.0226 -8.9669 -0.3725 19 6 1.6593 -4.8123 -0.8117 20 6 2.2429 -3.6344 -0.0018 21 1 -0.4850 0.8400 0.0004 22 1 0.8438 -2.1265 2.0858 23 1 -0.5575 -1.9096 1.0191 24 1 -1.0433 -3.9047 2.1824 25 1 0.6334 -4.4788 2.0918 26 1 -0.7487 -4.0440 -0.5029 27 1 -1.3269 -5.4044 0.4949 28 1 -0.3329 -6.5114 -1.6182 29 1 1.2090 -7.2613 -1.1401 30 1 -0.9886 -7.1700 0.9836 31 1 1.1684 -9.2513 0.0599 32 1 0.0801 -9.4021 1.5415 33 1 -1.9670 -9.3143 0.0463 34 1 -0.8790 -9.1632 -1.4350 35 1 2.4679 -5.4899 -1.0860 36 1 1.1989 -4.4247 -1.7204 37 1 2.4315 -3.9550 1.0228 38 1 3.1753 -3.3036 -0.4593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = 3.443032 kcal Electronic energy + Delta-G solvation = -15905.170485 eV Core-core repulsion = 13554.206631 eV Total energy + Delta-G solvation = -2350.963854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45654 -38.05448 -35.91036 -33.66386 -32.85537 -29.01078 -27.11042 -25.84031 -24.38843 -23.14020 -21.63099 -21.17730 -19.99698 -18.42897 -17.24998 -16.68137 -16.25362 -15.94591 -15.48271 -15.11474 -14.61733 -14.51195 -13.90944 -13.64534 -13.27578 -13.05693 -12.77565 -12.67742 -12.44122 -12.28864 -12.16093 -11.95487 -11.66775 -11.44524 -11.18738 -11.08661 -10.89710 -10.74902 -10.54376 -10.34116 -9.04455 -8.07477 -6.20309 1.38312 1.40103 1.51598 2.43211 2.86116 3.18355 3.21569 3.82762 4.03915 4.15499 4.24001 4.26709 4.38676 4.46217 4.55946 4.62886 4.70585 4.78371 4.80471 4.86683 4.90393 5.02912 5.07478 5.11674 5.24795 5.30764 5.34566 5.39170 5.43195 5.48714 5.63807 5.72124 6.05553 6.23179 6.34149 6.41900 6.58515 6.93660 7.47175 8.97071 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.064180 B = 0.006029 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.165130 B = 4643.443204 C = 4826.560892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.047 3.953 10 H -0.016 1.016 11 C -0.090 4.090 12 C -0.108 4.108 13 C 0.076 3.924 14 N -0.550 5.550 15 C 0.091 3.909 16 C -0.160 4.160 17 C -0.171 4.171 18 C -0.173 4.173 19 C 0.085 3.915 20 C -0.096 4.096 21 H 0.258 0.742 22 H 0.017 0.983 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.080 0.920 36 H -0.004 1.004 37 H 0.057 0.943 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -15.285 0.130 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.028 3.972 10 H 0.002 0.998 11 C -0.128 4.128 12 C -0.146 4.146 13 C -0.050 4.050 14 N -0.274 5.274 15 C -0.035 4.035 16 C -0.178 4.178 17 C -0.208 4.208 18 C -0.210 4.210 19 C -0.045 4.045 20 C -0.133 4.133 21 H 0.067 0.933 22 H 0.036 0.964 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.973 -15.261 0.519 15.301 hybrid contribution -0.087 1.714 -0.777 1.884 sum -1.060 -13.547 -0.257 13.590 Atomic orbital electron populations 1.70084 1.07162 1.26790 1.51707 1.25768 0.95680 1.02381 0.94952 0.85601 0.79169 0.79933 0.77544 1.19136 1.20719 1.20632 1.21850 0.92917 0.92550 1.50163 0.93095 1.18481 0.92819 0.92694 0.93162 0.99781 1.21730 0.99389 0.94503 0.97168 1.21408 1.00490 0.95540 0.97192 1.21709 0.91701 0.94917 0.96716 1.58875 1.13407 1.07542 1.47566 1.21660 0.98714 0.89435 0.93731 1.22248 1.03858 0.89650 1.02051 1.23040 0.97356 0.99466 1.00957 1.23039 0.98041 1.00037 0.99917 1.20864 0.94658 0.95409 0.93520 1.21448 0.98068 0.94335 0.99494 0.93267 0.96442 0.93606 0.92320 0.91670 0.96622 0.89499 0.95238 0.90153 0.88149 0.88537 0.88389 0.87925 0.88350 0.90204 0.98554 0.92435 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 11.32 21.45 0.24 -54.34 16 2 C 0.01 0.60 5.28 84.66 0.45 1.05 16 3 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.54 -30.61 8.33 25.60 0.21 -30.40 16 8 H 0.05 2.86 7.44 -2.91 -0.02 2.84 16 9 C 0.05 2.42 1.65 -11.88 -0.02 2.40 16 10 H -0.02 -0.92 6.58 -2.38 -0.02 -0.94 16 11 C -0.09 -4.43 4.64 31.26 0.15 -4.29 16 12 C -0.11 -4.20 5.41 30.16 0.16 -4.04 16 13 C 0.08 2.72 5.07 85.45 0.43 3.15 16 14 N -0.55 -18.14 3.93 -913.29 -3.59 -21.73 16 15 C 0.09 2.40 5.21 86.30 0.45 2.85 16 16 C -0.16 -3.58 5.48 -10.79 -0.06 -3.63 16 17 C -0.17 -3.17 10.18 30.59 0.31 -2.86 16 18 C -0.17 -3.02 10.25 30.60 0.31 -2.71 16 19 C 0.09 3.09 4.92 88.06 0.43 3.52 16 20 C -0.10 -4.11 5.14 30.34 0.16 -3.95 16 21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 22 H 0.02 0.88 7.97 -2.39 -0.02 0.86 16 23 H 0.05 2.53 6.51 -2.39 -0.02 2.51 16 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 2.47 7.26 -2.39 -0.02 2.45 16 26 H 0.02 0.65 6.66 -2.39 -0.02 0.64 16 27 H 0.09 2.62 6.11 -2.38 -0.01 2.61 16 28 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 29 H 0.08 1.91 7.47 -2.39 -0.02 1.89 16 30 H 0.10 2.44 6.60 -2.38 -0.02 2.42 16 31 H 0.10 1.69 8.03 -2.38 -0.02 1.68 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.48 7.74 -2.39 -0.02 2.46 16 36 H 0.00 -0.14 7.54 -2.39 -0.02 -0.16 16 37 H 0.06 2.43 7.11 -2.39 -0.02 2.41 16 38 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 Total: -1.00 -61.52 287.20 2.67 -58.85 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.01 Total: 9.31 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 2.99 Total: -38.91 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -3.35 Total: -76.07 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -61.52 2.67 -58.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.292 kcal (2) G-P(sol) polarization free energy of solvation -61.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds