Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46584 * 299.99673 * 3 2 1 6 6 H 1.48495 * 109.46974 * 59.99863 * 3 2 1 7 7 C 1.37881 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.27829 * 7 2 1 10 10 H 1.09001 * 109.73807 * 358.60685 * 9 7 2 11 11 C 1.50819 * 109.74596 * 119.33599 * 9 7 2 12 12 C 1.53814 * 111.62100 * 214.69185 * 11 9 7 13 13 C 1.54173 * 111.97485 * 319.04415 * 12 11 9 14 14 C 1.50761 * 112.60598 * 318.48325 * 13 12 11 15 15 C 1.54437 * 109.02145 * 93.01509 * 14 13 12 16 16 N 1.39776 * 111.77144 * 282.59502 * 15 14 13 17 17 C 1.46897 * 110.99778 * 189.13174 * 16 15 14 18 18 C 1.53004 * 109.47327 * 60.72989 * 17 16 15 19 19 C 1.53000 * 117.49708 * 243.75047 * 18 17 16 20 20 C 1.53001 * 117.49910 * 175.08791 * 18 17 16 21 21 H 0.96999 * 119.99562 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.05201 * 335.24795 * 11 9 7 23 23 H 1.09000 * 109.04556 * 94.14175 * 11 9 7 24 24 H 1.09001 * 108.98252 * 198.40007 * 12 11 9 25 25 H 1.09002 * 108.91774 * 79.63972 * 12 11 9 26 26 H 1.08999 * 108.85662 * 197.67719 * 13 12 11 27 27 H 1.09000 * 108.77811 * 79.22936 * 13 12 11 28 28 H 1.08999 * 109.54105 * 333.15591 * 14 13 12 29 29 H 1.09001 * 109.61849 * 212.92368 * 14 13 12 30 30 H 1.08993 * 109.01431 * 162.00599 * 15 14 13 31 31 H 1.08998 * 108.95598 * 43.14656 * 15 14 13 32 32 H 1.09000 * 109.47161 * 180.73187 * 17 16 15 33 33 H 1.09003 * 109.47103 * 300.72882 * 17 16 15 34 34 H 1.09002 * 115.54706 * 29.41605 * 18 17 16 35 35 H 1.08995 * 117.50155 * 359.97438 * 19 18 17 36 36 H 1.09003 * 117.49676 * 145.02310 * 19 18 17 37 37 H 1.09000 * 117.49563 * 214.98299 * 20 18 17 38 38 H 1.09000 * 117.49739 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 -0.0052 10 1 0.1785 -2.3051 0.0156 11 6 1.6036 -3.2857 -1.2428 12 6 0.4001 -4.0874 -1.7669 13 6 -0.4058 -4.7330 -0.6221 14 6 0.4778 -5.3212 0.4486 15 6 0.6985 -4.2664 1.5548 16 7 1.6355 -3.3023 1.1723 17 6 1.9938 -2.4381 2.3048 18 6 2.6115 -3.2864 3.4183 19 6 1.8617 -3.3585 4.7500 20 6 3.1590 -2.5527 4.6443 21 1 -0.4849 0.8401 -0.0004 22 1 1.9377 -2.5971 -2.0188 23 1 2.4147 -3.9747 -1.0072 24 1 0.7595 -4.8714 -2.4334 25 1 -0.2533 -3.4184 -2.3269 26 1 -1.0329 -5.5232 -1.0347 27 1 -1.0462 -3.9742 -0.1725 28 1 1.4378 -5.6018 0.0155 29 1 -0.0015 -6.2024 0.8753 30 1 1.0511 -4.7663 2.4569 31 1 -0.2502 -3.7744 1.7692 32 1 2.7144 -1.6890 1.9765 33 1 1.0991 -1.9415 2.6802 34 1 3.1403 -4.1810 3.0894 35 1 0.9286 -2.8012 4.8331 36 1 1.8976 -4.3003 5.2975 37 1 4.0478 -2.9649 5.1220 38 1 3.0788 -1.4658 4.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = 17.018722 kcal Electronic energy + Delta-G solvation = -16404.985746 eV Core-core repulsion = 14054.610578 eV Total energy + Delta-G solvation = -2350.375168 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.71119 -36.53249 -33.44472 -32.77023 -30.70490 -26.97905 -25.85553 -23.68284 -22.80815 -21.92086 -20.09942 -19.18587 -18.33068 -16.64088 -15.34688 -14.88537 -14.31337 -14.26685 -13.79050 -13.68128 -13.11217 -12.67747 -12.35494 -11.64793 -11.53472 -11.23921 -11.09732 -11.03092 -10.95023 -10.67001 -10.51742 -10.15073 -10.10898 -9.91896 -9.70786 -9.37372 -9.20196 -9.12000 -8.79212 -8.52473 -6.80743 -6.06701 -4.08671 3.25920 3.34991 3.39346 4.29922 4.38500 4.97781 5.24501 5.37165 5.45111 5.52632 5.59604 5.69417 5.91346 5.97782 6.07204 6.11376 6.19452 6.33122 6.37550 6.40199 6.50391 6.59582 6.67829 6.70127 6.75359 6.80535 6.96105 6.99375 7.19321 7.21383 7.27995 7.61232 7.79896 7.89304 8.15465 8.53857 8.99387 9.08934 9.54604 11.00996 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.013907 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.265088 B = 2012.889935 C = 3282.220140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.202 3.798 10 H 0.053 0.947 11 C -0.100 4.100 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.114 4.114 15 C 0.082 3.918 16 N -0.558 5.558 17 C 0.110 3.890 18 C -0.137 4.137 19 C -0.193 4.193 20 C -0.185 4.185 21 H 0.261 0.739 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.003 0.997 32 H 0.096 0.904 33 H 0.021 0.979 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -6.812 3.735 7.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.098 3.902 10 H 0.071 0.929 11 C -0.138 4.138 12 C -0.151 4.151 13 C -0.153 4.153 14 C -0.152 4.152 15 C -0.048 4.048 16 N -0.283 5.283 17 C -0.017 4.017 18 C -0.156 4.156 19 C -0.230 4.230 20 C -0.223 4.223 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.114 0.886 33 H 0.039 0.961 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.912 -6.937 3.574 8.035 hybrid contribution -0.395 1.317 0.278 1.403 sum 1.517 -5.620 3.852 6.981 Atomic orbital electron populations 1.69917 1.05993 1.26585 1.50544 1.24997 0.94821 0.99266 0.94618 0.86587 0.80374 0.83793 0.77625 1.19485 1.20973 1.21029 1.21108 0.93275 0.89998 1.50158 0.92254 1.19194 0.97748 0.89015 0.84221 0.92947 1.21538 0.95653 0.97517 0.99138 1.21924 0.98298 0.98181 0.96744 1.21359 0.98222 0.99068 0.96690 1.21440 1.00062 0.97128 0.96523 1.20813 0.93829 0.93836 0.96342 1.59160 1.44521 1.17511 1.07150 1.21387 0.98905 0.93727 0.87729 1.22616 1.02215 1.01489 0.89264 1.23021 0.96026 1.01501 1.02424 1.22895 0.96835 0.99075 1.03468 0.92913 0.92734 0.93303 0.94146 0.93112 0.93934 0.92275 0.91392 0.93144 0.92922 0.97874 0.88603 0.96051 0.87978 0.89352 0.89824 0.89596 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 12.61 55.43 0.70 -24.71 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -13.44 5.66 -34.44 -0.20 -13.63 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 9 C 0.20 4.96 2.17 -69.56 -0.15 4.81 16 10 H 0.05 1.46 5.45 -51.93 -0.28 1.17 16 11 C -0.10 -2.20 4.97 -27.40 -0.14 -2.34 16 12 C -0.11 -2.19 5.91 -25.69 -0.15 -2.34 16 13 C -0.12 -2.11 5.32 -27.24 -0.14 -2.25 16 14 C -0.11 -1.99 5.65 -27.10 -0.15 -2.14 16 15 C 0.08 1.62 4.82 -6.74 -0.03 1.59 16 16 N -0.56 -12.23 3.96 -233.38 -0.93 -13.16 16 17 C 0.11 2.36 4.70 -3.82 -0.02 2.34 16 18 C -0.14 -2.39 4.33 -90.62 -0.39 -2.78 16 19 C -0.19 -2.95 10.11 -26.69 -0.27 -3.22 16 20 C -0.19 -2.82 10.26 -26.69 -0.27 -3.09 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.05 1.25 7.71 -51.93 -0.40 0.85 16 23 H 0.05 1.05 7.26 -51.93 -0.38 0.67 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.20 6.57 -51.93 -0.34 0.86 16 28 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.96 6.50 -51.93 -0.34 0.62 16 31 H 0.00 0.07 7.54 -51.93 -0.39 -0.32 16 32 H 0.10 2.25 6.06 -51.93 -0.31 1.94 16 33 H 0.02 0.50 7.88 -51.93 -0.41 0.10 16 34 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 35 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -27.10 287.89 -9.48 -36.57 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.55 Total: 2.43 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.02 Total: -21.39 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.23 Total: -37.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.10 -9.48 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.593 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds